Wall clock time and date at job start Tue Mar 31 2020 18:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.46908 * 2 1 4 4 C 1.46497 * 119.99686 * 269.99577 * 3 2 1 5 5 C 1.53001 * 109.47480 * 270.00239 * 4 3 2 6 6 C 1.39054 * 119.99996 * 90.00413 * 3 2 1 7 7 C 1.39239 * 119.92218 * 0.24171 * 6 3 2 8 8 C 1.37118 * 120.06972 * 180.26009 * 7 6 3 9 9 C 1.39863 * 119.92680 * 359.49422 * 8 7 6 10 10 C 1.47411 * 120.07594 * 180.27725 * 9 8 7 11 11 O 1.21635 * 120.00266 * 322.30065 * 10 9 8 12 12 N 1.34779 * 120.00185 * 142.29888 * 10 9 8 13 13 C 1.36900 * 120.00264 * 186.79589 * 12 10 9 14 14 H 1.08003 * 120.00121 * 135.98330 * 13 12 10 15 15 C 1.39016 * 120.00216 * 315.98201 * 13 12 10 16 16 N 1.31387 * 119.99989 * 338.42247 * 15 13 12 17 17 Si 1.86799 * 120.00376 * 158.41622 * 15 13 12 18 18 H 1.48495 * 109.47012 * 89.99772 * 17 15 13 19 19 H 1.48494 * 109.47396 * 210.00588 * 17 15 13 20 20 H 1.48510 * 109.46954 * 330.00380 * 17 15 13 21 21 C 1.46504 * 119.99774 * 6.79797 * 12 10 9 22 22 C 1.50695 * 109.47171 * 100.83072 * 21 12 10 23 23 O 1.20823 * 120.00182 * 0.02562 * 22 21 12 24 24 O 1.34226 * 120.00255 * 179.97438 * 22 21 12 25 25 C 1.45196 * 117.00263 * 180.02562 * 24 22 21 26 26 C 1.39857 * 119.85084 * 0.25691 * 9 8 7 27 27 C 1.37121 * 119.92278 * 359.97438 * 26 9 8 28 28 H 1.08993 * 109.47125 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47178 * 300.00038 * 1 2 3 30 30 H 1.09001 * 109.47052 * 59.99982 * 1 2 3 31 31 H 1.09001 * 109.46809 * 240.00276 * 2 1 3 32 32 H 1.08992 * 109.46937 * 120.00171 * 2 1 3 33 33 H 1.09002 * 109.47431 * 30.00852 * 4 3 2 34 34 H 1.09004 * 109.46775 * 150.00527 * 4 3 2 35 35 H 1.09004 * 109.46881 * 60.00353 * 5 4 3 36 36 H 1.09001 * 109.47327 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.46764 * 300.00712 * 5 4 3 38 38 H 1.07994 * 119.96861 * 0.02562 * 7 6 3 39 39 H 1.07999 * 120.03698 * 179.77635 * 8 7 6 40 40 H 0.96994 * 120.00257 * 185.05033 * 16 15 13 41 41 H 1.09003 * 109.47008 * 220.83375 * 21 12 10 42 42 H 1.09004 * 109.46867 * 340.83306 * 21 12 10 43 43 H 1.08995 * 109.47215 * 60.00848 * 25 24 22 44 44 H 1.09008 * 109.47205 * 180.02562 * 25 24 22 45 45 H 1.08999 * 109.47192 * 300.00277 * 25 24 22 46 46 H 1.07993 * 120.03924 * 180.02562 * 26 9 8 47 47 H 1.08000 * 119.96424 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2501 2.0368 1.2042 7 6 2.0224 1.3771 2.4091 8 6 2.2449 2.0223 3.5984 9 6 2.7112 3.3410 3.6002 10 6 2.9573 4.0357 4.8768 11 8 2.2111 3.8566 5.8205 12 7 4.0093 4.8695 4.9985 13 6 4.3199 5.4061 6.2190 14 1 5.3479 5.4391 6.5486 15 6 3.3122 5.9085 7.0343 16 7 2.1605 6.2644 6.5116 17 14 3.5954 6.0775 8.8729 18 1 4.1598 7.4195 9.1655 19 1 2.3048 5.9162 9.5895 20 1 4.5469 5.0309 9.3255 21 6 4.8203 5.2015 3.8245 22 6 4.4219 6.5595 3.3065 23 8 3.5504 7.1859 3.8614 24 8 5.0360 7.0736 2.2294 25 6 4.6014 8.3864 1.7867 26 6 2.9438 3.9988 2.3881 27 6 2.7147 3.3493 1.2024 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.8745 0.7621 -1.8408 36 1 3.8893 2.3455 -2.6542 37 1 4.3883 2.2155 -0.9507 38 1 1.6666 0.3575 2.4071 39 1 2.0647 1.5114 4.5326 40 1 1.4843 6.6826 7.0672 41 1 5.8742 5.2135 4.1025 42 1 4.6579 4.4544 3.0476 43 1 4.7586 9.1100 2.5865 44 1 5.1768 8.6830 0.9097 45 1 3.5423 8.3514 1.5312 46 1 3.3042 5.0168 2.3860 47 1 2.8945 3.8565 0.2661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180441735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:00 Heat of formation + Delta-G solvation = -65.157885 kcal Electronic energy + Delta-G solvation = -30066.620469 eV Core-core repulsion = 26022.767188 eV Total energy + Delta-G solvation = -4043.853281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72701 -40.78484 -39.74049 -37.47839 -37.27723 -35.98495 -34.03592 -33.39053 -31.86684 -31.62660 -29.95847 -29.02067 -27.71058 -26.54204 -24.93131 -24.28613 -22.93568 -22.39355 -21.56182 -20.92676 -19.03312 -18.54326 -18.34125 -17.89766 -17.39510 -16.99611 -16.86675 -16.54511 -15.97199 -15.79431 -15.60527 -15.02153 -14.93568 -14.83701 -14.45656 -14.43976 -14.13309 -13.97469 -13.82287 -13.56581 -13.46696 -13.19660 -13.05205 -12.88477 -12.78430 -12.70963 -12.65256 -12.59229 -12.48283 -12.14661 -12.01469 -11.79395 -11.63838 -11.45200 -11.35229 -10.78792 -10.73281 -10.12260 -9.88569 -9.20456 -8.16352 -8.10609 -5.93383 0.34100 0.52102 1.36693 1.40753 1.44387 1.52074 1.75853 2.20408 2.35184 2.53418 3.03641 3.13179 3.34134 3.83171 3.95368 4.02019 4.12129 4.21447 4.24064 4.30559 4.33712 4.37499 4.41250 4.46226 4.50150 4.55874 4.59074 4.59619 4.61871 4.73430 4.73981 4.91867 4.97874 5.05495 5.05872 5.17261 5.31002 5.36307 5.42781 5.46552 5.50475 5.51860 5.70584 5.82449 6.19926 6.43447 6.57482 6.98148 7.05975 7.19148 7.62239 8.29257 8.94802 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004008 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.528417 B = 6983.908831 C = 8614.992667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.620 5.620 4 C 0.111 3.889 5 C -0.167 4.167 6 C 0.237 3.763 7 C -0.196 4.196 8 C -0.036 4.036 9 C -0.195 4.195 10 C 0.512 3.488 11 O -0.580 6.580 12 N -0.442 5.442 13 C -0.382 4.382 14 H 0.088 0.912 15 C 0.029 3.971 16 N -0.841 5.841 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.294 1.294 20 H -0.260 1.260 21 C 0.094 3.906 22 C 0.428 3.572 23 O -0.500 6.500 24 O -0.365 6.365 25 C 0.030 3.970 26 C -0.064 4.064 27 C -0.197 4.197 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.149 0.851 39 H 0.113 0.887 40 H 0.252 0.748 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.047 0.953 44 H 0.141 0.859 45 H 0.051 0.949 46 H 0.110 0.890 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -9.809 -21.955 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.328 5.328 4 C -0.012 4.012 5 C -0.225 4.225 6 C 0.132 3.868 7 C -0.219 4.219 8 C -0.056 4.056 9 C -0.201 4.201 10 C 0.303 3.697 11 O -0.462 6.462 12 N -0.163 5.163 13 C -0.509 4.509 14 H 0.106 0.894 15 C -0.180 4.180 16 N -0.473 5.473 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.221 1.221 20 H -0.184 1.184 21 C -0.032 4.032 22 C 0.268 3.732 23 O -0.385 6.385 24 O -0.282 6.282 25 C -0.063 4.063 26 C -0.084 4.084 27 C -0.219 4.219 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.166 0.834 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.066 0.934 44 H 0.159 0.841 45 H 0.070 0.930 46 H 0.128 0.872 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.856 -9.751 -21.468 23.752 hybrid contribution -0.408 1.047 1.495 1.870 sum 2.448 -8.705 -19.973 21.925 Atomic orbital electron populations 1.22197 0.96219 1.02720 1.01647 1.21602 0.94066 0.81438 1.03879 1.46757 1.69814 1.13834 1.02413 1.21610 0.97383 0.97784 0.84391 1.22177 0.96242 1.02391 1.01724 1.17914 0.91270 0.90956 0.86663 1.20593 1.09790 1.01532 0.89936 1.20755 0.93918 0.92391 0.98531 1.19933 1.10100 0.97129 0.92923 1.18616 0.82465 0.80574 0.88045 1.90562 1.46211 1.66355 1.43024 1.43061 1.27955 1.39284 1.05971 1.19239 0.94404 1.43704 0.93540 0.89421 1.26140 0.95108 0.93380 1.03412 1.70112 1.06731 1.33692 1.36787 0.85348 0.77263 0.78672 0.79351 1.19371 1.22061 1.18367 1.21951 0.98855 0.90517 0.91837 1.25105 0.79860 0.90189 0.78035 1.90825 1.30336 1.60976 1.56403 1.86508 1.61476 1.35816 1.44418 1.23424 1.01239 0.80689 1.00956 1.21102 0.96780 0.98718 0.91774 1.20588 1.08842 0.94571 0.97874 0.90154 0.94288 0.92383 0.88486 0.90458 0.88872 0.90909 0.92201 0.90252 0.93540 0.83397 0.86885 0.93867 0.86255 0.84330 0.93383 0.84124 0.93043 0.87212 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 71.98 0.74 -1.56 16 2 C 0.11 1.51 5.87 86.38 0.51 2.01 16 3 N -0.62 -11.20 2.59 -697.27 -1.81 -13.01 16 4 C 0.11 1.48 5.86 86.38 0.51 1.99 16 5 C -0.17 -1.98 10.24 71.98 0.74 -1.24 16 6 C 0.24 6.16 6.55 38.48 0.25 6.41 16 7 C -0.20 -5.68 9.16 22.25 0.20 -5.47 16 8 C -0.04 -1.38 9.59 22.40 0.21 -1.17 16 9 C -0.20 -8.71 5.40 -20.08 -0.11 -8.81 16 10 C 0.51 28.86 6.81 86.66 0.59 29.45 16 11 O -0.58 -38.10 14.38 -4.14 -0.06 -38.16 16 12 N -0.44 -23.91 2.12 -643.32 -1.36 -25.27 16 13 C -0.38 -22.46 8.82 84.09 0.74 -21.72 16 14 H 0.09 4.83 7.92 -2.91 -0.02 4.81 16 15 C 0.03 1.77 4.28 84.95 0.36 2.13 16 16 N -0.84 -55.66 11.74 21.68 0.25 -55.41 16 17 Si 0.97 48.42 29.61 68.60 2.03 50.45 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 20 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.09 3.92 5.47 85.63 0.47 4.38 16 22 C 0.43 18.51 5.98 71.23 0.43 18.94 16 23 O -0.50 -27.10 15.88 21.97 0.35 -26.76 16 24 O -0.37 -12.27 10.56 -51.38 -0.54 -12.82 16 25 C 0.03 0.82 10.56 113.37 1.20 2.02 16 26 C -0.06 -2.42 7.32 22.40 0.16 -2.25 16 27 C -0.20 -5.65 9.16 22.25 0.20 -5.45 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 32 H 0.08 1.07 6.16 -2.39 -0.01 1.05 16 33 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.07 1.06 6.17 -2.39 -0.01 1.05 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.15 3.38 6.11 -2.91 -0.02 3.37 16 39 H 0.11 4.49 8.03 -2.91 -0.02 4.47 16 40 H 0.25 16.18 8.31 -92.71 -0.77 15.41 16 41 H 0.12 4.33 8.12 -2.39 -0.02 4.31 16 42 H 0.14 5.06 4.29 -2.39 -0.01 5.05 16 43 H 0.05 1.39 8.13 -2.39 -0.02 1.37 16 44 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 46 H 0.11 4.34 4.00 -2.91 -0.01 4.33 16 47 H 0.15 3.37 6.11 -2.91 -0.02 3.36 16 Total: -1.00 -87.83 384.14 7.05 -80.78 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.98 Total: 20.53 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 7.20 Total: 19.65 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -2.91 Total: -93.68 kcal Atomic # 8 Polarization: -77.48 SS G_CDS: -0.25 Total: -77.73 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.45 kcal Total: -87.83 7.05 -80.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180441735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.625 kcal (2) G-P(sol) polarization free energy of solvation -87.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds