Wall clock time and date at job start Tue Mar 31 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00225 * 2 1 4 4 O 1.20824 * 119.99652 * 359.72435 * 3 2 1 5 5 C 1.50699 * 120.00333 * 180.02562 * 3 2 1 6 6 N 1.46898 * 109.47401 * 179.72784 * 5 3 2 7 7 C 1.46900 * 110.99584 * 293.94819 * 6 5 3 8 8 C 1.46904 * 111.00012 * 169.99787 * 6 5 3 9 9 H 1.08999 * 109.46666 * 309.99491 * 8 6 5 10 10 C 1.52991 * 109.47168 * 69.99617 * 8 6 5 11 11 C 1.50699 * 109.46882 * 189.99556 * 8 6 5 12 12 O 1.21293 * 120.00152 * 341.82326 * 11 8 6 13 13 N 1.34779 * 120.00210 * 161.81745 * 11 8 6 14 14 C 1.46506 * 119.99219 * 6.72275 * 13 11 8 15 15 C 1.50706 * 109.46963 * 93.83068 * 14 13 11 16 16 H 1.07996 * 120.00211 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99754 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00009 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00263 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47132 * 89.99797 * 19 17 15 21 21 H 1.48494 * 109.47357 * 210.00112 * 19 17 15 22 22 H 1.48498 * 109.47005 * 330.00362 * 19 17 15 23 23 C 1.39917 * 120.00223 * 186.71986 * 13 11 8 24 24 C 1.38865 * 120.07366 * 6.80973 * 23 13 11 25 25 C 1.38115 * 119.93237 * 179.76609 * 24 23 13 26 26 C 1.38288 * 120.06754 * 0.48769 * 25 24 23 27 27 C 1.38278 * 120.14027 * 359.76984 * 26 25 24 28 28 C 1.38110 * 120.07435 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47016 * 300.00220 * 1 2 3 30 30 H 1.08998 * 109.47656 * 59.99817 * 1 2 3 31 31 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46395 * 299.72429 * 5 3 2 33 33 H 1.08995 * 109.47541 * 59.72020 * 5 3 2 34 34 H 1.09005 * 109.47274 * 60.00098 * 7 6 5 35 35 H 1.09003 * 109.47185 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47349 * 300.00036 * 7 6 5 37 37 H 1.09010 * 109.47132 * 174.12250 * 10 8 6 38 38 H 1.09003 * 109.47679 * 294.12183 * 10 8 6 39 39 H 1.08996 * 109.47341 * 54.12515 * 10 8 6 40 40 H 1.09005 * 109.46484 * 213.82319 * 14 13 11 41 41 H 1.08993 * 109.47592 * 333.82443 * 14 13 11 42 42 H 0.97002 * 119.99546 * 180.02562 * 18 17 15 43 43 H 1.08006 * 120.03287 * 359.97438 * 24 23 13 44 44 H 1.07997 * 119.96907 * 180.25977 * 25 24 23 45 45 H 1.07994 * 119.92809 * 179.74454 * 26 25 24 46 46 H 1.08003 * 119.96316 * 179.97438 * 27 26 25 47 47 H 1.07993 * 120.03901 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0050 5 6 3.5663 1.2748 -0.0006 6 7 3.9828 2.6835 -0.0070 7 6 3.5980 3.3404 -1.2634 8 6 5.4273 2.8065 0.2304 9 1 5.7022 2.2219 1.1084 10 6 6.1907 2.2853 -0.9888 11 6 5.7770 4.2541 0.4610 12 8 5.0083 5.1262 0.1152 13 7 6.9439 4.5797 1.0516 14 6 7.9362 3.5399 1.3357 15 6 8.9199 3.4598 0.1968 16 1 8.8162 4.1172 -0.6537 17 6 9.9524 2.5471 0.2407 18 7 10.8106 2.4768 -0.7534 19 14 10.1323 1.4103 1.7121 20 1 9.3682 0.1604 1.4683 21 1 11.5668 1.0826 1.9120 22 1 9.6047 2.0842 2.9256 23 6 7.2076 5.9106 1.3933 24 6 6.2169 6.8738 1.2558 25 6 6.4789 8.1858 1.5985 26 6 7.7295 8.5426 2.0687 27 6 8.7199 7.5868 2.2018 28 6 8.4626 6.2722 1.8658 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9560 0.7848 0.8917 33 1 3.9559 0.7766 -0.8882 34 1 2.5152 3.2956 -1.3801 35 1 3.9187 4.3820 -1.2419 36 1 4.0751 2.8310 -2.1007 37 1 7.2566 2.4719 -0.8571 38 1 6.0197 1.2140 -1.0940 39 1 5.8399 2.7989 -1.8839 40 1 8.4655 3.7849 2.2565 41 1 7.4336 2.5795 1.4500 42 1 11.5368 1.8343 -0.7226 43 1 5.2413 6.5966 0.8843 44 1 5.7075 8.9346 1.4957 45 1 7.9332 9.5699 2.3322 46 1 9.6957 7.8687 2.5690 47 1 9.2366 5.5262 1.9696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181565813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:58 Heat of formation + Delta-G solvation = -63.999956 kcal Electronic energy + Delta-G solvation = -29934.436527 eV Core-core repulsion = 25890.633458 eV Total energy + Delta-G solvation = -4043.803069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11422 -41.45458 -39.70738 -38.24647 -37.17752 -37.05485 -34.59923 -32.57328 -31.73725 -30.77553 -29.95326 -29.53063 -28.07984 -26.67843 -24.93034 -24.60232 -23.30899 -22.48447 -21.55211 -20.16635 -19.11605 -18.72772 -18.48555 -18.12539 -17.60438 -17.52820 -16.81126 -16.59534 -16.24974 -15.93553 -15.71212 -15.57129 -15.01277 -14.95105 -14.77290 -14.48084 -14.38228 -14.24449 -14.14520 -13.84840 -13.67311 -13.36147 -13.13186 -12.95613 -12.79573 -12.75217 -12.54118 -12.46058 -12.35217 -12.21848 -12.17266 -11.86882 -11.75192 -11.66877 -11.42511 -10.90910 -10.75714 -10.12583 -9.74671 -9.37745 -8.70060 -8.28038 -6.35031 0.43601 0.59817 1.18130 1.41808 1.45285 1.49721 1.53781 1.65525 2.04336 2.35571 2.92821 3.04332 3.08347 3.41276 3.78041 3.96220 4.05947 4.14320 4.16901 4.22139 4.30615 4.33153 4.35111 4.40871 4.44365 4.50484 4.60643 4.65954 4.68302 4.71643 4.76240 4.78607 4.87957 4.90240 5.15003 5.26599 5.35142 5.40146 5.41819 5.48592 5.62445 5.72870 5.78507 5.84446 5.84919 6.15157 6.32581 6.53482 6.68722 6.78400 7.13351 7.28370 8.87229 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.004260 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.919422 B = 6570.573389 C = 8771.838953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.522 6.522 5 C 0.057 3.943 6 N -0.521 5.521 7 C 0.008 3.992 8 C 0.082 3.918 9 H 0.127 0.873 10 C -0.198 4.198 11 C 0.520 3.480 12 O -0.539 6.539 13 N -0.537 5.537 14 C 0.206 3.794 15 C -0.527 4.527 16 H 0.030 0.970 17 C 0.032 3.968 18 N -0.934 5.934 19 Si 0.929 3.071 20 H -0.251 1.251 21 H -0.289 1.289 22 H -0.242 1.242 23 C 0.142 3.858 24 C -0.191 4.191 25 C -0.107 4.107 26 C -0.151 4.151 27 C -0.103 4.103 28 C -0.164 4.164 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.269 0.731 43 H 0.158 0.842 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 -3.993 5.349 14.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.308 3.692 4 O -0.410 6.410 5 C -0.071 4.071 6 N -0.246 5.246 7 C -0.139 4.139 8 C -0.029 4.029 9 H 0.145 0.855 10 C -0.256 4.256 11 C 0.311 3.689 12 O -0.418 6.418 13 N -0.257 5.257 14 C 0.085 3.915 15 C -0.565 4.565 16 H 0.048 0.952 17 C -0.169 4.169 18 N -0.573 5.573 19 Si 0.751 3.249 20 H -0.175 1.175 21 H -0.215 1.215 22 H -0.165 1.165 23 C 0.047 3.953 24 C -0.211 4.211 25 C -0.125 4.125 26 C -0.169 4.169 27 C -0.122 4.122 28 C -0.184 4.184 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.168 0.832 46 H 0.163 0.837 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.635 -3.218 5.467 15.038 hybrid contribution 0.867 -0.712 -0.623 1.283 sum -12.769 -3.930 4.844 14.211 Atomic orbital electron populations 1.23516 0.74781 1.05641 1.02347 1.86478 1.24936 1.32447 1.83992 1.23802 0.92281 0.81290 0.71824 1.90655 1.67582 1.37268 1.45506 1.21772 0.87642 0.90475 1.07213 1.61566 1.12673 1.13149 1.37234 1.22790 1.01385 1.01186 0.88525 1.21529 0.87587 0.92240 1.01523 0.85514 1.22650 1.04105 1.02327 0.96530 1.20936 0.79871 0.92171 0.75886 1.90263 1.50807 1.50380 1.50382 1.45660 1.17272 1.07135 1.55612 1.19979 0.87441 0.87097 0.96998 1.21096 1.11181 1.20035 1.04168 0.95195 1.25623 0.94387 0.98282 0.98578 1.70038 1.16362 1.37143 1.33734 0.85996 0.78155 0.80307 0.80452 1.17511 1.21500 1.16509 1.18309 0.94920 0.84124 0.97958 1.22458 1.01351 0.93407 1.03838 1.21365 0.97929 0.95356 0.97895 1.21401 0.93217 1.00438 1.01889 1.21233 1.00332 0.91654 0.98954 1.21136 0.95154 0.98308 1.03852 0.92188 0.92223 0.84869 0.83878 0.88003 0.90972 0.90230 0.94739 0.89169 0.89125 0.92901 0.93550 0.91846 0.92157 0.82552 0.84025 0.83241 0.83731 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.33 10.56 -51.38 -0.54 -7.87 16 3 C 0.46 11.53 7.68 71.24 0.55 12.07 16 4 O -0.52 -16.59 14.06 21.97 0.31 -16.28 16 5 C 0.06 1.26 5.13 85.56 0.44 1.70 16 6 N -0.52 -15.70 4.33 -906.05 -3.92 -19.62 16 7 C 0.01 0.27 8.20 127.69 1.05 1.32 16 8 C 0.08 2.62 1.89 44.16 0.08 2.71 16 9 H 0.13 3.51 6.45 -2.39 -0.02 3.50 16 10 C -0.20 -6.43 8.30 71.98 0.60 -5.83 16 11 C 0.52 20.66 6.75 87.66 0.59 21.25 16 12 O -0.54 -23.14 10.23 -3.07 -0.03 -23.17 16 13 N -0.54 -22.21 2.68 -635.28 -1.71 -23.91 16 14 C 0.21 8.41 3.12 85.63 0.27 8.68 16 15 C -0.53 -26.08 6.97 25.60 0.18 -25.90 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.03 1.58 5.47 84.65 0.46 2.04 16 18 N -0.93 -52.22 13.96 21.45 0.30 -51.92 16 19 Si 0.93 36.59 27.47 68.60 1.88 38.47 16 20 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 21 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.24 -8.67 6.54 99.48 0.65 -8.02 16 23 C 0.14 5.86 6.48 38.16 0.25 6.10 16 24 C -0.19 -7.41 8.98 22.39 0.20 -7.21 16 25 C -0.11 -3.39 10.04 22.25 0.22 -3.16 16 26 C -0.15 -4.30 10.04 22.29 0.22 -4.08 16 27 C -0.10 -3.27 10.04 22.25 0.22 -3.04 16 28 C -0.16 -6.35 9.06 22.39 0.20 -6.15 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.14 2.41 7.93 -2.38 -0.02 2.40 16 33 H 0.10 1.88 7.20 -2.39 -0.02 1.86 16 34 H 0.07 2.35 5.89 -2.38 -0.01 2.33 16 35 H 0.08 3.01 5.23 -2.39 -0.01 3.00 16 36 H 0.03 1.00 6.33 -2.39 -0.02 0.99 16 37 H 0.09 3.65 4.64 -2.38 -0.01 3.64 16 38 H 0.09 2.33 7.19 -2.39 -0.02 2.31 16 39 H 0.05 1.78 6.07 -2.39 -0.01 1.76 16 40 H 0.05 1.87 5.81 -2.38 -0.01 1.86 16 41 H 0.06 2.29 5.15 -2.39 -0.01 2.27 16 42 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.16 6.55 4.71 -46.51 -0.22 6.33 16 44 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 45 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.12 4.98 6.18 -2.91 -0.02 4.96 16 Total: -1.00 -67.90 366.50 3.77 -64.13 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.74 Total: 38.02 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.73 Total: 2.15 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -5.33 Total: -95.45 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.27 Total: -47.32 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 1.88 Total: 38.47 kcal Total: -67.90 3.77 -64.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181565813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.133 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds