Wall clock time and date at job start Tue Mar 31 2020 18:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47193 * 2 1 4 4 C 1.48325 * 110.98233 * 61.39787 * 3 2 1 5 5 C 1.51308 * 104.80266 * 92.64142 * 4 3 2 6 6 O 1.21284 * 125.75336 * 196.69714 * 5 4 3 7 7 N 1.34857 * 108.49672 * 16.71748 * 5 4 3 8 8 C 1.46803 * 109.58894 * 0.42696 * 7 5 4 9 9 H 1.08996 * 110.11522 * 101.64133 * 8 7 5 10 10 C 1.50703 * 110.11579 * 223.23166 * 8 7 5 11 11 C 1.38254 * 119.92539 * 175.09429 * 10 8 7 12 12 C 1.38241 * 120.14569 * 180.02562 * 11 10 8 13 13 C 1.38568 * 119.99848 * 359.97438 * 12 11 10 14 14 O 1.35995 * 120.07128 * 180.02562 * 13 12 11 15 15 C 1.42902 * 116.99777 * 359.97438 * 14 13 12 16 16 C 1.39147 * 119.85345 * 359.97438 * 13 12 11 17 17 O 1.35996 * 120.07205 * 180.02562 * 16 13 12 18 18 C 1.42894 * 117.00227 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47268 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47159 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00069 * 0.02562 * 20 19 18 22 22 C 1.37869 * 119.99997 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00156 * 179.72748 * 22 20 19 25 25 H 1.48498 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47389 * 120.00262 * 24 22 20 27 27 H 1.48498 * 109.47062 * 240.00357 * 24 22 20 28 28 C 1.38246 * 119.92849 * 355.34856 * 10 8 7 29 29 H 1.09001 * 109.46885 * 173.01824 * 1 2 3 30 30 H 1.09003 * 109.46986 * 293.02040 * 1 2 3 31 31 H 1.08994 * 109.47293 * 53.02137 * 1 2 3 32 32 H 1.09006 * 109.47418 * 239.99994 * 2 1 3 33 33 H 1.09005 * 109.47432 * 120.00349 * 2 1 3 34 34 H 1.09000 * 110.40497 * 333.78892 * 4 3 2 35 35 H 1.09008 * 110.42093 * 211.50637 * 4 3 2 36 36 H 0.97003 * 125.20035 * 180.46477 * 7 5 4 37 37 H 1.08002 * 119.92213 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.99855 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47704 * 300.00110 * 15 14 13 40 40 H 1.09001 * 109.47416 * 60.00396 * 15 14 13 41 41 H 1.09004 * 109.47244 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47231 * 59.99917 * 18 17 16 43 43 H 1.08998 * 109.47150 * 299.99886 * 18 17 16 44 44 H 1.08997 * 109.47167 * 59.99750 * 19 18 17 45 45 H 1.08998 * 109.46838 * 299.99949 * 19 18 17 46 46 H 0.97008 * 120.00233 * 179.97438 * 23 22 20 47 47 H 1.08000 * 119.99721 * 359.97438 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5716 2.1067 1.2159 5 6 2.6964 1.9226 2.2112 6 8 2.6206 2.1049 3.4078 7 7 3.7974 1.5222 1.5433 8 6 3.4957 1.4259 0.1098 9 1 3.8867 2.2976 -0.4149 10 6 4.0932 0.1661 -0.4621 11 6 3.8457 -0.1790 -1.7778 12 6 4.3910 -1.3339 -2.3069 13 6 5.1881 -2.1481 -1.5184 14 8 5.7258 -3.2843 -2.0376 15 6 5.4269 -3.5779 -3.4038 16 6 5.4381 -1.8001 -0.1945 17 8 6.2202 -2.5957 0.5832 18 6 6.4332 -2.1763 1.9325 19 6 7.3313 -3.1891 2.6457 20 6 7.5564 -2.7465 4.0685 21 1 7.1038 -1.8343 4.4283 22 6 8.3392 -3.5066 4.9113 23 7 8.8899 -4.6177 4.4733 24 14 8.6245 -2.9540 6.6727 25 1 7.9051 -1.6775 6.9137 26 1 8.1164 -3.9917 7.6055 27 1 10.0783 -2.7539 6.8994 28 6 4.8833 -0.6445 0.3315 29 1 -0.3633 -1.0201 -0.1249 30 1 -0.3633 0.4019 0.9459 31 1 -0.3633 0.6181 -0.8209 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.6500 1.6692 1.5996 35 1 1.4267 3.1650 0.9983 36 1 4.6570 1.3271 1.9483 37 1 3.2242 0.4546 -2.3932 38 1 4.1957 -1.6015 -3.3349 39 1 4.3488 -3.6818 -3.5257 40 1 5.7876 -2.7673 -4.0370 41 1 5.9167 -4.5083 -3.6911 42 1 5.4753 -2.1127 2.4487 43 1 6.9141 -1.1982 1.9373 44 1 8.2891 -3.2523 2.1293 45 1 6.8507 -4.1675 2.6408 46 1 9.4410 -5.1524 5.0661 47 1 5.0721 -0.3745 1.3600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189857573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:47 Heat of formation + Delta-G solvation = -58.837038 kcal Electronic energy + Delta-G solvation = -29418.232354 eV Core-core repulsion = 25374.653166 eV Total energy + Delta-G solvation = -4043.579189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52018 -40.20408 -38.28823 -37.89518 -36.42647 -34.35557 -33.40490 -31.22981 -30.69432 -30.27203 -29.54595 -28.09097 -26.74026 -25.15946 -24.53613 -22.72140 -22.22171 -21.20266 -20.61056 -20.45620 -18.56002 -17.61988 -17.20437 -16.76070 -16.25077 -16.01821 -15.89666 -15.58810 -15.38393 -15.13198 -15.08232 -14.65016 -14.55859 -14.24575 -14.11924 -13.85422 -13.72774 -12.87112 -12.71585 -12.42073 -12.35327 -12.26031 -12.17707 -11.93157 -11.83347 -11.59748 -11.34480 -11.20293 -10.97349 -10.85947 -10.79970 -10.59612 -10.53143 -9.90741 -9.69180 -9.50059 -9.29935 -9.09630 -8.75836 -8.45760 -7.64041 -6.10886 -4.15753 1.16342 1.36857 2.31857 2.98173 3.26975 3.27323 3.31543 3.34280 3.38293 3.66940 3.69839 4.12313 4.23901 4.40235 4.56180 4.71998 4.86395 4.90805 4.99124 5.06415 5.07400 5.14246 5.21526 5.22862 5.25740 5.32290 5.35201 5.42055 5.53758 5.58341 5.63963 5.79169 5.86503 5.95471 6.01347 6.10428 6.15279 6.23429 6.37653 6.56497 6.63659 6.67298 6.83360 7.19874 7.51296 7.62261 7.79372 7.95990 8.01157 8.22046 8.89934 9.48990 11.00568 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.003881 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.853301 B = 7212.250342 C = 9856.352216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.024 3.976 3 N -0.487 5.487 4 C -0.004 4.004 5 C 0.497 3.503 6 O -0.521 6.521 7 N -0.746 5.746 8 C 0.327 3.673 9 H 0.116 0.884 10 C -0.112 4.112 11 C -0.105 4.105 12 C -0.175 4.175 13 C 0.098 3.902 14 O -0.301 6.301 15 C 0.027 3.973 16 C 0.123 3.877 17 O -0.301 6.301 18 C 0.064 3.936 19 C 0.027 3.973 20 C -0.527 4.527 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.888 5.888 24 Si 0.897 3.103 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.419 0.581 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.029 0.971 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 10.810 -18.074 25.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 N -0.212 5.212 4 C -0.135 4.135 5 C 0.281 3.719 6 O -0.396 6.396 7 N -0.407 5.407 8 C 0.134 3.866 9 H 0.134 0.866 10 C -0.114 4.114 11 C -0.125 4.125 12 C -0.193 4.193 13 C 0.052 3.948 14 O -0.214 6.214 15 C -0.068 4.068 16 C 0.075 3.925 17 O -0.215 6.215 18 C -0.010 4.010 19 C -0.010 4.010 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.187 4.187 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.261 0.739 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.116 10.693 -17.860 25.726 hybrid contribution 0.809 -0.122 1.745 1.927 sum -14.307 10.570 -16.115 24.003 Atomic orbital electron populations 1.21868 0.94380 1.02438 1.02247 1.22608 0.96080 0.88636 1.02990 1.65910 1.04504 1.15461 1.35347 1.23326 0.98377 1.02825 0.88979 1.21508 0.85933 0.75802 0.88656 1.90800 1.83734 1.50979 1.14046 1.47025 1.14535 1.69660 1.09456 1.21396 0.88065 0.96487 0.80646 0.86643 1.19512 1.00676 0.96499 0.94673 1.20449 1.00827 0.97030 0.94151 1.20968 1.01560 0.96760 1.00047 1.18401 0.97070 0.88462 0.90861 1.86265 1.69274 1.38339 1.27529 1.23050 1.00975 1.01874 0.80930 1.18391 0.93854 0.91174 0.89071 1.86308 1.63042 1.47027 1.25081 1.23362 1.00005 1.00471 0.77143 1.19111 0.94265 0.93747 0.93907 1.20995 1.31411 1.08763 0.95312 0.92364 1.24975 0.95399 0.94800 0.98902 1.69990 1.32569 1.14054 1.36048 0.86450 0.78048 0.78810 0.84231 1.19593 1.20804 1.20790 1.20902 1.01731 0.95158 1.00896 0.91686 0.92700 0.91410 0.88442 0.93867 0.86949 0.85985 0.73852 0.85019 0.84783 0.92897 0.92878 0.88286 0.93333 0.93267 0.95303 0.95350 0.92749 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C 0.02 0.22 4.52 -3.83 -0.02 0.21 16 3 N -0.49 -4.16 5.54 -230.49 -1.28 -5.44 16 4 C 0.00 -0.04 6.48 -3.89 -0.03 -0.06 16 5 C 0.50 6.28 8.52 -10.65 -0.09 6.19 16 6 O -0.52 -8.89 18.03 5.55 0.10 -8.79 16 7 N -0.75 -8.40 5.30 -56.86 -0.30 -8.71 16 8 C 0.33 3.09 4.03 -126.73 -0.51 2.58 16 9 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 10 C -0.11 -1.23 3.99 -104.61 -0.42 -1.65 16 11 C -0.11 -1.02 7.34 -39.57 -0.29 -1.31 16 12 C -0.17 -1.87 9.04 -39.46 -0.36 -2.23 16 13 C 0.10 1.43 6.70 -39.12 -0.26 1.17 16 14 O -0.30 -4.54 10.28 -34.23 -0.35 -4.89 16 15 C 0.03 0.25 9.81 101.05 0.99 1.24 16 16 C 0.12 2.07 6.70 -39.13 -0.26 1.80 16 17 O -0.30 -6.27 9.92 -34.23 -0.34 -6.61 16 18 C 0.06 1.38 4.68 37.16 0.17 1.55 16 19 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 20 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 24 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C -0.17 -2.37 8.31 -39.46 -0.33 -2.69 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.39 6.33 -51.93 -0.33 0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.90 5.36 -51.93 -0.28 0.62 16 33 H 0.04 0.50 8.04 -51.93 -0.42 0.08 16 34 H 0.11 0.92 5.75 -51.93 -0.30 0.62 16 35 H 0.12 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.42 4.87 7.44 -40.82 -0.30 4.57 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 39 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.00 7.65 -51.93 -0.40 0.61 16 43 H 0.05 0.99 7.68 -51.93 -0.40 0.59 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.13 1.95 4.41 -52.49 -0.23 1.72 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -34.11 378.30 -9.05 -43.16 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.70 Total: 1.76 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.60 Total: -6.88 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: -0.84 Total: -40.07 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.59 Total: -20.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.11 -9.05 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189857573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.678 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds