Wall clock time and date at job start Tue Mar 31 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47193 * 2 1 4 4 C 1.48325 * 110.98233 * 61.39787 * 3 2 1 5 5 C 1.51308 * 104.80266 * 92.64142 * 4 3 2 6 6 O 1.21284 * 125.75336 * 196.69714 * 5 4 3 7 7 N 1.34857 * 108.49672 * 16.71748 * 5 4 3 8 8 C 1.46803 * 109.58894 * 0.42696 * 7 5 4 9 9 H 1.08996 * 110.11522 * 101.64133 * 8 7 5 10 10 C 1.50703 * 110.11579 * 223.23166 * 8 7 5 11 11 C 1.38254 * 119.92539 * 175.09429 * 10 8 7 12 12 C 1.38241 * 120.14569 * 180.02562 * 11 10 8 13 13 C 1.38568 * 119.99848 * 359.97438 * 12 11 10 14 14 O 1.35995 * 120.07128 * 180.02562 * 13 12 11 15 15 C 1.42902 * 116.99777 * 359.97438 * 14 13 12 16 16 C 1.39147 * 119.85345 * 359.97438 * 13 12 11 17 17 O 1.35996 * 120.07205 * 180.02562 * 16 13 12 18 18 C 1.42894 * 117.00227 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47268 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47159 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00069 * 0.02562 * 20 19 18 22 22 C 1.37869 * 119.99997 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00156 * 179.72748 * 22 20 19 25 25 H 1.48498 * 109.47183 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47389 * 120.00262 * 24 22 20 27 27 H 1.48498 * 109.47062 * 240.00357 * 24 22 20 28 28 C 1.38246 * 119.92849 * 355.34856 * 10 8 7 29 29 H 1.09001 * 109.46885 * 173.01824 * 1 2 3 30 30 H 1.09003 * 109.46986 * 293.02040 * 1 2 3 31 31 H 1.08994 * 109.47293 * 53.02137 * 1 2 3 32 32 H 1.09006 * 109.47418 * 239.99994 * 2 1 3 33 33 H 1.09005 * 109.47432 * 120.00349 * 2 1 3 34 34 H 1.09000 * 110.40497 * 333.78892 * 4 3 2 35 35 H 1.09008 * 110.42093 * 211.50637 * 4 3 2 36 36 H 0.97003 * 125.20035 * 180.46477 * 7 5 4 37 37 H 1.08002 * 119.92213 * 359.97438 * 11 10 8 38 38 H 1.08001 * 119.99855 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47704 * 300.00110 * 15 14 13 40 40 H 1.09001 * 109.47416 * 60.00396 * 15 14 13 41 41 H 1.09004 * 109.47244 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47231 * 59.99917 * 18 17 16 43 43 H 1.08998 * 109.47150 * 299.99886 * 18 17 16 44 44 H 1.08997 * 109.47167 * 59.99750 * 19 18 17 45 45 H 1.08998 * 109.46838 * 299.99949 * 19 18 17 46 46 H 0.97008 * 120.00233 * 179.97438 * 23 22 20 47 47 H 1.08000 * 119.99721 * 359.97438 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5716 2.1067 1.2159 5 6 2.6964 1.9226 2.2112 6 8 2.6206 2.1049 3.4078 7 7 3.7974 1.5222 1.5433 8 6 3.4957 1.4259 0.1098 9 1 3.8867 2.2976 -0.4149 10 6 4.0932 0.1661 -0.4621 11 6 3.8457 -0.1790 -1.7778 12 6 4.3910 -1.3339 -2.3069 13 6 5.1881 -2.1481 -1.5184 14 8 5.7258 -3.2843 -2.0376 15 6 5.4269 -3.5779 -3.4038 16 6 5.4381 -1.8001 -0.1945 17 8 6.2202 -2.5957 0.5832 18 6 6.4332 -2.1763 1.9325 19 6 7.3313 -3.1891 2.6457 20 6 7.5564 -2.7465 4.0685 21 1 7.1038 -1.8343 4.4283 22 6 8.3392 -3.5066 4.9113 23 7 8.8899 -4.6177 4.4733 24 14 8.6245 -2.9540 6.6727 25 1 7.9051 -1.6775 6.9137 26 1 8.1164 -3.9917 7.6055 27 1 10.0783 -2.7539 6.8994 28 6 4.8833 -0.6445 0.3315 29 1 -0.3633 -1.0201 -0.1249 30 1 -0.3633 0.4019 0.9459 31 1 -0.3633 0.6181 -0.8209 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.6500 1.6692 1.5996 35 1 1.4267 3.1650 0.9983 36 1 4.6570 1.3271 1.9483 37 1 3.2242 0.4546 -2.3932 38 1 4.1957 -1.6015 -3.3349 39 1 4.3488 -3.6818 -3.5257 40 1 5.7876 -2.7673 -4.0370 41 1 5.9167 -4.5083 -3.6911 42 1 5.4753 -2.1127 2.4487 43 1 6.9141 -1.1982 1.9373 44 1 8.2891 -3.2523 2.1293 45 1 6.8507 -4.1675 2.6408 46 1 9.4410 -5.1524 5.0661 47 1 5.0721 -0.3745 1.3600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189857573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:46 Heat of formation + Delta-G solvation = -84.533849 kcal Electronic energy + Delta-G solvation = -29419.346652 eV Core-core repulsion = 25374.653166 eV Total energy + Delta-G solvation = -4044.693486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.42154 -41.26530 -39.52569 -38.98002 -37.46178 -35.52410 -35.17935 -32.68190 -31.87607 -31.10964 -30.82746 -28.94165 -27.58117 -27.03895 -25.32948 -24.12121 -23.12710 -22.61116 -21.61306 -21.49601 -19.69652 -18.69738 -18.55323 -17.96486 -17.60861 -17.22861 -17.11274 -16.57452 -16.46841 -16.36380 -16.28630 -15.95642 -15.60831 -15.13257 -15.12614 -14.83937 -14.67583 -14.37427 -14.19139 -13.95504 -13.31529 -13.15293 -13.09274 -13.05142 -12.81639 -12.69246 -12.62958 -12.56202 -12.43481 -12.04376 -12.03315 -11.81590 -11.66026 -11.56471 -11.48871 -11.44593 -10.67626 -10.45194 -9.92808 -9.75169 -8.75743 -8.31672 -6.45649 0.18594 0.35795 1.35133 1.36299 1.37001 1.50649 2.10670 2.21124 2.38815 2.44514 2.48938 2.77898 3.02527 3.28025 3.38663 3.79650 3.86182 4.02685 4.07668 4.16258 4.16595 4.26959 4.31566 4.36371 4.43747 4.45033 4.51442 4.55279 4.61960 4.65148 4.68640 4.76695 4.85443 4.94944 5.06873 5.16533 5.23872 5.26282 5.32629 5.40273 5.41596 5.53648 5.61708 5.70278 5.79368 5.94117 6.00194 6.20007 6.65997 6.69358 6.98842 7.24722 8.81681 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.003881 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.853301 B = 7212.250342 C = 9856.352216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 N -0.467 5.467 4 C 0.005 3.995 5 C 0.488 3.512 6 O -0.575 6.575 7 N -0.747 5.747 8 C 0.327 3.673 9 H 0.146 0.854 10 C -0.109 4.109 11 C -0.081 4.081 12 C -0.161 4.161 13 C 0.085 3.915 14 O -0.342 6.342 15 C 0.017 3.983 16 C 0.069 3.931 17 O -0.334 6.334 18 C 0.088 3.912 19 C 0.031 3.969 20 C -0.547 4.547 21 H 0.066 0.934 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.974 3.026 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.273 1.273 28 C -0.169 4.169 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.012 0.988 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.414 0.586 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.059 0.941 44 H -0.001 1.001 45 H -0.004 1.004 46 H 0.268 0.732 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 13.263 -20.231 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 N -0.192 5.192 4 C -0.125 4.125 5 C 0.274 3.726 6 O -0.454 6.454 7 N -0.406 5.406 8 C 0.135 3.865 9 H 0.163 0.837 10 C -0.110 4.110 11 C -0.099 4.099 12 C -0.179 4.179 13 C 0.039 3.961 14 O -0.256 6.256 15 C -0.077 4.077 16 C 0.023 3.977 17 O -0.249 6.249 18 C 0.013 3.987 19 C -0.006 4.006 20 C -0.584 4.584 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.568 5.568 24 Si 0.797 3.203 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.198 1.198 28 C -0.189 4.189 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.030 0.970 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.255 0.745 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.018 0.982 45 H 0.014 0.986 46 H 0.077 0.923 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.318 13.152 -20.086 29.603 hybrid contribution 1.432 -0.905 2.210 2.784 sum -15.886 12.247 -17.877 26.868 Atomic orbital electron populations 1.21844 0.92696 1.03040 1.02915 1.22641 0.97538 0.88634 1.01614 1.66048 1.03592 1.14917 1.34672 1.23442 0.96877 1.04584 0.87593 1.22223 0.87115 0.74767 0.88496 1.90764 1.84678 1.53498 1.16474 1.47215 1.14222 1.68667 1.10458 1.21698 0.88659 0.96560 0.79569 0.83709 1.19702 0.99732 0.96478 0.95124 1.20911 0.99151 0.96415 0.93469 1.21374 0.99547 0.95886 1.01117 1.18704 0.97805 0.89146 0.90425 1.86208 1.70097 1.38851 1.30492 1.23383 1.02616 1.03106 0.78590 1.18845 0.96075 0.92640 0.90095 1.86192 1.65295 1.48917 1.24486 1.22784 0.98863 0.98829 0.78192 1.18922 0.93588 0.93741 0.94332 1.21381 1.31693 1.09207 0.96153 0.91543 1.25995 0.94837 0.94674 1.03868 1.70125 1.33265 1.15353 1.38016 0.85273 0.78311 0.78657 0.78055 1.18619 1.20060 1.19814 1.20879 1.02267 0.94962 1.00768 0.91443 0.92684 0.89809 0.88111 0.96966 0.86114 0.83057 0.74505 0.81024 0.81116 0.90834 0.90815 0.87472 0.93210 0.92318 0.98239 0.98574 0.92335 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.01 16 2 C 0.02 0.37 4.52 86.30 0.39 0.76 16 3 N -0.47 -6.32 5.54 -883.15 -4.89 -11.20 16 4 C 0.01 0.08 6.48 85.48 0.55 0.64 16 5 C 0.49 12.00 8.52 87.84 0.75 12.75 16 6 O -0.58 -20.02 18.03 -3.04 -0.05 -20.08 16 7 N -0.75 -16.28 5.30 -452.15 -2.39 -18.68 16 8 C 0.33 5.23 4.03 128.11 0.52 5.75 16 9 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 10 C -0.11 -2.15 3.99 -19.86 -0.08 -2.23 16 11 C -0.08 -1.23 7.34 22.27 0.16 -1.06 16 12 C -0.16 -2.91 9.04 22.35 0.20 -2.71 16 13 C 0.08 2.45 6.70 22.57 0.15 2.60 16 14 O -0.34 -10.43 10.28 -79.63 -0.82 -11.25 16 15 C 0.02 0.28 9.81 113.37 1.11 1.40 16 16 C 0.07 2.42 6.70 22.56 0.15 2.57 16 17 O -0.33 -14.98 9.92 -79.64 -0.79 -15.77 16 18 C 0.09 4.04 4.68 71.98 0.34 4.38 16 19 C 0.03 1.79 5.34 29.85 0.16 1.95 16 20 C -0.55 -32.05 9.11 25.60 0.23 -31.81 16 21 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 22 C 0.01 0.30 5.46 84.65 0.46 0.76 16 23 N -0.93 -57.77 13.29 21.44 0.28 -57.49 16 24 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C -0.17 -4.85 8.31 22.35 0.19 -4.66 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.64 6.33 -2.39 -0.02 0.63 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.50 5.36 -2.38 -0.01 1.48 16 33 H 0.01 0.27 8.04 -2.38 -0.02 0.25 16 34 H 0.12 1.66 5.75 -2.39 -0.01 1.65 16 35 H 0.15 1.44 8.14 -2.38 -0.02 1.43 16 36 H 0.41 9.82 7.44 -92.71 -0.69 9.13 16 37 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.17 1.82 6.30 -2.91 -0.02 1.80 16 39 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 40 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 41 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 2.21 7.65 -2.39 -0.02 2.20 16 43 H 0.06 2.52 7.68 -2.39 -0.02 2.50 16 44 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 47 H 0.12 3.71 4.41 -2.91 -0.01 3.70 16 Total: -1.00 -80.56 378.30 -0.34 -80.89 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.31 Total: 16.35 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.98 Total: -9.93 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -7.00 Total: -87.37 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -1.66 Total: -47.10 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -80.56 -0.34 -80.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189857573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.641 kcal (2) G-P(sol) polarization free energy of solvation -80.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds