Wall clock time and date at job start Tue Mar 31 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47169 * 2 1 4 4 N 1.46506 * 109.47295 * 240.00475 * 2 1 3 5 5 C 1.34779 * 119.99815 * 84.99828 * 4 2 1 6 6 O 1.21587 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.47529 * 119.99699 * 180.02562 * 5 4 2 8 8 C 1.39672 * 120.19848 * 0.02562 * 7 5 4 9 9 C 1.37824 * 119.91822 * 179.97438 * 8 7 5 10 10 C 1.38579 * 120.32658 * 0.02562 * 9 8 7 11 11 C 1.38019 * 120.39986 * 359.97438 * 10 9 8 12 12 C 1.38837 * 120.07186 * 359.74555 * 11 10 9 13 13 O 1.35520 * 120.16163 * 180.27252 * 12 11 10 14 14 C 1.34817 * 117.00062 * 354.40345 * 13 12 11 15 15 H 1.07998 * 120.00031 * 5.05567 * 14 13 12 16 16 C 1.38699 * 120.00027 * 185.06336 * 14 13 12 17 17 N 1.31522 * 120.00160 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99966 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46741 * 90.00007 * 18 16 14 20 20 H 1.48494 * 109.47085 * 209.99898 * 18 16 14 21 21 H 1.48489 * 109.46976 * 330.00142 * 18 16 14 22 22 C 1.50696 * 109.47336 * 120.00430 * 2 1 3 23 23 O 1.21280 * 120.00198 * 120.00019 * 22 2 1 24 24 N 1.34786 * 119.99757 * 300.00241 * 22 2 1 25 25 C 1.46496 * 119.99550 * 179.97438 * 24 22 2 26 26 C 1.53005 * 109.47089 * 60.00318 * 25 24 22 27 27 C 1.53007 * 109.46774 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47370 * 299.99797 * 25 24 22 29 29 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47162 * 299.99842 * 1 2 3 31 31 H 1.09006 * 109.47481 * 59.99500 * 1 2 3 32 32 H 0.96996 * 119.99813 * 265.00104 * 4 2 1 33 33 H 1.08004 * 120.03864 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.83578 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.79672 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.96737 * 180.02562 * 11 10 9 37 37 H 0.96994 * 120.00013 * 179.97438 * 17 16 14 38 38 H 0.96998 * 119.99702 * 359.97438 * 24 22 2 39 39 H 1.08994 * 109.47730 * 59.99710 * 26 25 24 40 40 H 1.09003 * 109.46801 * 179.97438 * 26 25 24 41 41 H 1.08998 * 109.46967 * 299.99205 * 26 25 24 42 42 H 1.08990 * 109.47026 * 60.00347 * 27 25 24 43 43 H 1.09006 * 109.46850 * 180.02562 * 27 25 24 44 44 H 1.09003 * 109.47224 * 299.99891 * 27 25 24 45 45 H 1.08994 * 109.46867 * 60.00256 * 28 25 24 46 46 H 1.09002 * 109.46649 * 180.02562 * 28 25 24 47 47 H 1.09001 * 109.46865 * 300.00232 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8583 1.1618 -2.4116 7 6 2.6383 -0.7136 -3.5619 8 6 2.9707 -2.0689 -3.5042 9 6 3.4286 -2.7131 -4.6333 10 6 3.5618 -2.0225 -5.8274 11 6 3.2372 -0.6830 -5.8995 12 6 2.7689 -0.0191 -4.7736 13 8 2.4444 1.2948 -4.8437 14 6 2.7077 1.9293 -6.0037 15 1 3.0814 1.3731 -6.8507 16 6 2.4989 3.2964 -6.1094 17 7 2.0435 3.9738 -5.0780 18 14 2.8645 4.1757 -7.7165 19 1 1.6484 4.1751 -8.5687 20 1 3.2701 5.5759 -7.4335 21 1 3.9656 3.4749 -8.4246 22 6 2.0323 -0.7105 1.2304 23 8 2.7296 -1.6965 1.1190 24 7 1.7067 -0.2501 2.4546 25 6 2.1946 -0.9411 3.6506 26 6 3.7246 -0.9416 3.6508 27 6 1.6852 -0.2195 4.9000 28 6 1.6841 -2.3834 3.6503 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8683 -2.6117 -2.5761 34 1 3.6849 -3.7612 -4.5873 35 1 3.9218 -2.5356 -6.7069 36 1 3.3433 -0.1517 -6.8337 37 1 1.8978 4.9299 -5.1518 38 1 1.1493 0.5388 2.5435 39 1 4.0884 0.0859 3.6511 40 1 4.0876 -1.4553 4.5410 41 1 4.0879 -1.4554 2.7608 42 1 0.5953 -0.2188 4.9000 43 1 2.0486 -0.7334 5.7899 44 1 2.0493 0.8079 4.9000 45 1 2.0473 -2.8972 2.7603 46 1 2.0468 -2.8973 4.5405 47 1 0.5941 -2.3830 3.6502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194646569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:44 Heat of formation + Delta-G solvation = -74.069844 kcal Electronic energy + Delta-G solvation = -29078.111370 eV Core-core repulsion = 25033.871637 eV Total energy + Delta-G solvation = -4044.239733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54151 -39.46089 -38.10524 -36.68460 -36.29691 -34.48800 -32.48686 -32.30804 -30.95029 -29.26467 -28.86124 -27.66876 -27.44762 -25.39873 -24.72089 -23.00464 -21.57759 -20.78568 -19.79264 -19.68513 -18.22664 -17.94000 -16.76289 -16.33508 -15.91618 -15.52656 -15.15862 -14.65336 -14.50434 -14.36771 -14.16769 -14.09746 -13.79375 -13.69961 -13.61897 -13.35946 -12.81547 -12.70649 -12.54099 -12.46531 -12.37866 -12.23177 -12.12310 -11.83887 -11.69826 -11.54702 -11.35912 -11.27624 -11.19080 -11.08726 -10.87816 -10.74574 -10.44688 -9.63226 -9.55285 -9.26141 -8.86825 -8.85748 -8.61251 -8.23416 -7.27885 -6.42904 -4.02469 1.74857 2.36202 2.53515 2.85458 3.12770 3.13960 3.18499 3.73540 3.77120 3.95052 4.39745 4.64591 4.66050 4.69742 4.80724 5.08897 5.17249 5.20934 5.23799 5.27520 5.35743 5.46908 5.49854 5.52227 5.55749 5.58219 5.65272 5.73299 5.74811 5.76452 5.90015 6.07691 6.13849 6.16562 6.16933 6.24613 6.40517 6.60912 6.72383 6.87329 6.95342 7.10762 7.26970 7.32240 7.37417 7.73173 7.94146 8.08199 8.16653 8.97060 9.08926 9.69851 10.71076 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002884 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.092865 B = 9705.582375 C =11013.017967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 H 0.112 0.888 4 N -0.727 5.727 5 C 0.559 3.441 6 O -0.502 6.502 7 C -0.226 4.226 8 C -0.036 4.036 9 C -0.230 4.230 10 C -0.050 4.050 11 C -0.239 4.239 12 C 0.191 3.809 13 O -0.125 6.125 14 C -0.403 4.403 15 H 0.094 0.906 16 C 0.045 3.955 17 N -0.834 5.834 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.266 1.266 22 C 0.518 3.482 23 O -0.531 6.531 24 N -0.722 5.722 25 C 0.168 3.832 26 C -0.165 4.165 27 C -0.155 4.155 28 C -0.163 4.163 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.402 0.598 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.271 0.729 38 H 0.401 0.599 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 -9.668 15.619 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.130 0.870 4 N -0.384 5.384 5 C 0.349 3.651 6 O -0.376 6.376 7 C -0.231 4.231 8 C -0.055 4.055 9 C -0.249 4.249 10 C -0.069 4.069 11 C -0.258 4.258 12 C 0.131 3.869 13 O -0.023 6.023 14 C -0.479 4.479 15 H 0.111 0.889 16 C -0.163 4.163 17 N -0.465 5.465 18 Si 0.764 3.236 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.191 1.191 22 C 0.304 3.696 23 O -0.407 6.407 24 N -0.376 5.376 25 C 0.083 3.917 26 C -0.223 4.223 27 C -0.213 4.213 28 C -0.221 4.221 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.236 0.764 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.443 -9.037 15.727 18.196 hybrid contribution 0.064 0.297 -0.721 0.782 sum -1.379 -8.740 15.006 17.420 Atomic orbital electron populations 1.22138 0.93371 1.02647 1.03485 1.20598 0.95319 0.98326 0.83741 0.86998 1.45679 1.70248 1.14335 1.08160 1.18225 0.77841 0.86679 0.82380 1.90937 1.47965 1.14614 1.84129 1.18777 1.17611 0.94466 0.92228 1.20824 0.94790 0.92256 0.97586 1.20476 1.11204 0.99541 0.93674 1.20904 0.95420 0.93641 0.96912 1.21150 1.09836 0.95429 0.99387 1.19265 0.90090 0.85843 0.91696 1.84170 1.66278 1.15610 1.36236 1.21491 1.46103 0.91357 0.88939 0.88910 1.25368 0.96290 0.95515 0.99113 1.70125 1.38723 1.08393 1.29304 0.85736 0.79031 0.78794 0.80004 1.19774 1.20166 1.19086 1.20773 0.79602 0.84464 0.84743 1.90616 1.37385 1.26185 1.86552 1.46128 1.54115 1.32172 1.05140 1.20345 0.94520 0.92687 0.84172 1.22239 0.94178 1.02360 1.03548 1.22092 1.01603 1.00875 0.96717 1.22222 1.00880 0.95495 1.03537 0.92142 0.91744 0.90242 0.76133 0.86831 0.87237 0.87183 0.85073 0.91938 0.76399 0.92651 0.91999 0.90164 0.91898 0.90889 0.91841 0.90211 0.92011 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.38 37.15 0.35 -1.60 16 2 C 0.13 1.87 2.98 -69.08 -0.21 1.66 16 3 H 0.11 1.77 7.58 -51.93 -0.39 1.37 16 4 N -0.73 -12.51 4.90 -55.98 -0.27 -12.79 16 5 C 0.56 12.41 7.73 -12.47 -0.10 12.31 16 6 O -0.50 -13.44 14.83 -16.57 -0.25 -13.68 16 7 C -0.23 -5.03 5.89 -104.81 -0.62 -5.65 16 8 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 9 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 10 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 11 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 12 C 0.19 4.79 6.66 -38.60 -0.26 4.53 16 13 O -0.12 -3.68 7.84 -21.06 -0.17 -3.85 16 14 C -0.40 -11.43 9.49 30.90 0.29 -11.13 16 15 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 16 C 0.04 1.24 5.49 -17.51 -0.10 1.15 16 17 N -0.83 -25.00 13.67 55.48 0.76 -24.25 16 18 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 C 0.52 6.64 6.64 -10.98 -0.07 6.57 16 23 O -0.53 -8.04 12.05 5.56 0.07 -7.97 16 24 N -0.72 -6.85 5.00 -47.60 -0.24 -7.08 16 25 C 0.17 1.45 1.06 -131.81 -0.14 1.31 16 26 C -0.17 -1.60 8.40 37.16 0.31 -1.29 16 27 C -0.16 -0.93 8.59 37.16 0.32 -0.61 16 28 C -0.16 -1.46 8.40 37.16 0.31 -1.15 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 6.33 5.82 -40.82 -0.24 6.10 16 33 H 0.11 1.72 6.40 -52.48 -0.34 1.38 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.40 2.92 7.89 -40.82 -0.32 2.60 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.00 6.17 -51.93 -0.32 0.68 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -35.03 384.75 -7.43 -42.45 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.68 Total: 11.99 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -1.43 Total: -6.14 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.25 Total: -44.12 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.34 Total: -25.50 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.03 -7.43 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194646569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.616 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds