Wall clock time and date at job start Tue Mar 31 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47169 * 2 1 4 4 N 1.46506 * 109.47295 * 240.00475 * 2 1 3 5 5 C 1.34779 * 119.99815 * 84.99828 * 4 2 1 6 6 O 1.21587 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.47529 * 119.99699 * 180.02562 * 5 4 2 8 8 C 1.39672 * 120.19848 * 0.02562 * 7 5 4 9 9 C 1.37824 * 119.91822 * 179.97438 * 8 7 5 10 10 C 1.38579 * 120.32658 * 0.02562 * 9 8 7 11 11 C 1.38019 * 120.39986 * 359.97438 * 10 9 8 12 12 C 1.38837 * 120.07186 * 359.74555 * 11 10 9 13 13 O 1.35520 * 120.16163 * 180.27252 * 12 11 10 14 14 C 1.34817 * 117.00062 * 354.40345 * 13 12 11 15 15 H 1.07998 * 120.00031 * 5.05567 * 14 13 12 16 16 C 1.38699 * 120.00027 * 185.06336 * 14 13 12 17 17 N 1.31522 * 120.00160 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99966 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46741 * 90.00007 * 18 16 14 20 20 H 1.48494 * 109.47085 * 209.99898 * 18 16 14 21 21 H 1.48489 * 109.46976 * 330.00142 * 18 16 14 22 22 C 1.50696 * 109.47336 * 120.00430 * 2 1 3 23 23 O 1.21280 * 120.00198 * 120.00019 * 22 2 1 24 24 N 1.34786 * 119.99757 * 300.00241 * 22 2 1 25 25 C 1.46496 * 119.99550 * 179.97438 * 24 22 2 26 26 C 1.53005 * 109.47089 * 60.00318 * 25 24 22 27 27 C 1.53007 * 109.46774 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47370 * 299.99797 * 25 24 22 29 29 H 1.09003 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47162 * 299.99842 * 1 2 3 31 31 H 1.09006 * 109.47481 * 59.99500 * 1 2 3 32 32 H 0.96996 * 119.99813 * 265.00104 * 4 2 1 33 33 H 1.08004 * 120.03864 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.83578 * 180.02562 * 9 8 7 35 35 H 1.07998 * 119.79672 * 179.97438 * 10 9 8 36 36 H 1.07997 * 119.96737 * 180.02562 * 11 10 9 37 37 H 0.96994 * 120.00013 * 179.97438 * 17 16 14 38 38 H 0.96998 * 119.99702 * 359.97438 * 24 22 2 39 39 H 1.08994 * 109.47730 * 59.99710 * 26 25 24 40 40 H 1.09003 * 109.46801 * 179.97438 * 26 25 24 41 41 H 1.08998 * 109.46967 * 299.99205 * 26 25 24 42 42 H 1.08990 * 109.47026 * 60.00347 * 27 25 24 43 43 H 1.09006 * 109.46850 * 180.02562 * 27 25 24 44 44 H 1.09003 * 109.47224 * 299.99891 * 27 25 24 45 45 H 1.08994 * 109.46867 * 60.00256 * 28 25 24 46 46 H 1.09002 * 109.46649 * 180.02562 * 28 25 24 47 47 H 1.09001 * 109.46865 * 300.00232 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8583 1.1618 -2.4116 7 6 2.6383 -0.7136 -3.5619 8 6 2.9707 -2.0689 -3.5042 9 6 3.4286 -2.7131 -4.6333 10 6 3.5618 -2.0225 -5.8274 11 6 3.2372 -0.6830 -5.8995 12 6 2.7689 -0.0191 -4.7736 13 8 2.4444 1.2948 -4.8437 14 6 2.7077 1.9293 -6.0037 15 1 3.0814 1.3731 -6.8507 16 6 2.4989 3.2964 -6.1094 17 7 2.0435 3.9738 -5.0780 18 14 2.8645 4.1757 -7.7165 19 1 1.6484 4.1751 -8.5687 20 1 3.2701 5.5759 -7.4335 21 1 3.9656 3.4749 -8.4246 22 6 2.0323 -0.7105 1.2304 23 8 2.7296 -1.6965 1.1190 24 7 1.7067 -0.2501 2.4546 25 6 2.1946 -0.9411 3.6506 26 6 3.7246 -0.9416 3.6508 27 6 1.6852 -0.2195 4.9000 28 6 1.6841 -2.3834 3.6503 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6317 -1.1527 33 1 2.8683 -2.6117 -2.5761 34 1 3.6849 -3.7612 -4.5873 35 1 3.9218 -2.5356 -6.7069 36 1 3.3433 -0.1517 -6.8337 37 1 1.8978 4.9299 -5.1518 38 1 1.1493 0.5388 2.5435 39 1 4.0884 0.0859 3.6511 40 1 4.0876 -1.4553 4.5410 41 1 4.0879 -1.4554 2.7608 42 1 0.5953 -0.2188 4.9000 43 1 2.0486 -0.7334 5.7899 44 1 2.0493 0.8079 4.9000 45 1 2.0473 -2.8972 2.7603 46 1 2.0468 -2.8973 4.5405 47 1 0.5941 -2.3830 3.6502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194646569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:43 Heat of formation + Delta-G solvation = -99.062248 kcal Electronic energy + Delta-G solvation = -29079.195122 eV Core-core repulsion = 25033.871637 eV Total energy + Delta-G solvation = -4045.323485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71494 -41.03825 -39.75316 -38.04490 -37.64650 -35.90541 -34.31725 -33.62488 -32.32887 -30.64454 -30.51509 -28.23892 -28.18318 -27.37628 -25.95284 -24.49981 -23.18466 -21.99868 -21.32385 -20.58093 -19.85123 -19.64065 -18.28459 -17.63919 -17.24023 -16.68643 -16.39286 -16.30241 -15.95978 -15.87142 -15.76922 -15.32076 -15.20253 -15.04569 -14.77353 -14.52041 -14.41514 -14.20766 -13.75581 -13.54537 -13.43116 -13.22153 -13.02006 -12.99582 -12.96233 -12.73006 -12.66113 -12.52878 -12.46882 -12.34108 -12.12101 -12.10295 -11.93875 -11.43205 -10.82215 -10.74819 -10.63343 -10.19338 -10.10684 -9.81586 -9.04611 -8.43603 -6.14189 0.10542 0.71632 1.33486 1.44706 1.47987 1.52249 1.79055 2.07918 2.16677 2.43304 2.87905 3.21865 3.45466 3.50588 3.88296 3.94449 3.99084 4.06172 4.06886 4.11780 4.14880 4.28408 4.51711 4.55903 4.64426 4.70660 4.74260 4.76413 4.77823 4.88123 4.96516 4.97576 5.01431 5.07662 5.13148 5.14680 5.23539 5.33902 5.41408 5.44851 5.48037 5.58303 5.60544 5.68456 5.97054 6.15265 6.48706 6.61427 6.95674 7.13307 7.41800 7.80261 8.76720 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.002884 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.092865 B = 9705.582375 C =11013.017967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.122 3.878 3 H 0.093 0.907 4 N -0.708 5.708 5 C 0.555 3.445 6 O -0.559 6.559 7 C -0.245 4.245 8 C -0.032 4.032 9 C -0.202 4.202 10 C -0.038 4.038 11 C -0.256 4.256 12 C 0.152 3.848 13 O -0.185 6.185 14 C -0.428 4.428 15 H 0.106 0.894 16 C -0.020 4.020 17 N -0.903 5.903 18 Si 1.021 2.979 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.249 1.249 22 C 0.525 3.475 23 O -0.554 6.554 24 N -0.706 5.706 25 C 0.163 3.837 26 C -0.164 4.164 27 C -0.149 4.149 28 C -0.160 4.160 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.411 0.589 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.126 0.874 37 H 0.271 0.729 38 H 0.414 0.586 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 -12.976 16.550 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 H 0.111 0.889 4 N -0.364 5.364 5 C 0.345 3.655 6 O -0.438 6.438 7 C -0.250 4.250 8 C -0.050 4.050 9 C -0.220 4.220 10 C -0.056 4.056 11 C -0.275 4.275 12 C 0.097 3.903 13 O -0.088 6.088 14 C -0.504 4.504 15 H 0.124 0.876 16 C -0.220 4.220 17 N -0.538 5.538 18 Si 0.840 3.160 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.173 1.173 22 C 0.310 3.690 23 O -0.433 6.433 24 N -0.360 5.360 25 C 0.079 3.921 26 C -0.222 4.222 27 C -0.206 4.206 28 C -0.218 4.218 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.064 0.936 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.937 -12.439 16.715 20.856 hybrid contribution -0.016 0.874 -0.816 1.196 sum -0.954 -11.565 15.899 19.683 Atomic orbital electron populations 1.22067 0.91531 1.03459 1.03680 1.20793 0.96796 0.97382 0.83669 0.88903 1.45477 1.68729 1.14502 1.07737 1.18428 0.77282 0.86101 0.83695 1.90917 1.50629 1.17108 1.85146 1.19220 1.17843 0.96313 0.91599 1.21259 0.93486 0.90396 0.99896 1.21147 1.07048 1.01619 0.92182 1.21430 0.93149 0.91888 0.99142 1.21312 1.10652 0.97311 0.98268 1.20013 0.91034 0.85297 0.93946 1.84171 1.69781 1.17765 1.37066 1.22035 1.46655 0.92219 0.89494 0.87634 1.26726 0.95825 0.96077 1.03353 1.70311 1.42386 1.08651 1.32482 0.84573 0.79508 0.77199 0.74762 1.18614 1.19718 1.17281 1.20341 0.79518 0.84046 0.85067 1.90616 1.38527 1.27231 1.86890 1.46063 1.53294 1.32211 1.04389 1.20551 0.93907 0.93079 0.84598 1.22221 0.95068 1.02002 1.02941 1.22061 1.02351 1.00832 0.95402 1.22179 1.01315 0.95310 1.02981 0.90895 0.88022 0.93586 0.75032 0.83311 0.82108 0.82668 0.85602 0.92006 0.74943 0.92873 0.90115 0.93233 0.90697 0.89460 0.91426 0.92984 0.90336 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.38 71.98 0.68 -3.02 16 2 C 0.12 3.62 2.98 44.24 0.13 3.75 16 3 H 0.09 3.14 7.58 -2.39 -0.02 3.13 16 4 N -0.71 -24.92 4.90 -449.28 -2.20 -27.12 16 5 C 0.55 25.98 7.73 86.69 0.67 26.65 16 6 O -0.56 -32.57 14.83 16.91 0.25 -32.32 16 7 C -0.25 -11.15 5.89 -19.99 -0.12 -11.27 16 8 C -0.03 -1.07 9.54 22.52 0.21 -0.86 16 9 C -0.20 -5.90 10.02 22.25 0.22 -5.68 16 10 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 11 C -0.26 -11.18 9.16 22.36 0.20 -10.98 16 12 C 0.15 8.01 6.66 22.91 0.15 8.16 16 13 O -0.19 -11.83 7.84 0.81 0.01 -11.83 16 14 C -0.43 -25.93 9.49 67.93 0.64 -25.29 16 15 H 0.11 5.74 5.21 -2.91 -0.02 5.73 16 16 C -0.02 -1.20 5.49 84.85 0.47 -0.74 16 17 N -0.90 -58.52 13.67 21.62 0.30 -58.23 16 18 Si 1.02 44.14 29.55 68.60 2.03 46.17 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 22 C 0.52 13.18 6.64 87.65 0.58 13.76 16 23 O -0.55 -16.51 12.05 -3.03 -0.04 -16.55 16 24 N -0.71 -12.35 5.00 -422.90 -2.11 -14.46 16 25 C 0.16 2.48 1.06 3.61 0.00 2.48 16 26 C -0.16 -2.98 8.40 71.98 0.60 -2.37 16 27 C -0.15 -1.31 8.59 71.98 0.62 -0.69 16 28 C -0.16 -2.51 8.40 71.98 0.60 -1.91 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.72 7.56 -2.39 -0.02 1.70 16 31 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.41 12.65 5.82 -92.71 -0.54 12.11 16 33 H 0.15 3.93 6.40 -2.91 -0.02 3.91 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 35 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.13 5.51 5.64 -2.91 -0.02 5.49 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.41 5.21 7.89 -92.71 -0.73 4.48 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 1.22 6.17 -2.39 -0.01 1.21 16 42 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.05 1.14 6.17 -2.39 -0.01 1.12 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -87.46 384.75 3.87 -83.59 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -0.26 Total: 39.76 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.90 Total: -9.01 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -4.02 Total: -99.81 kcal Atomic # 8 Polarization: -60.91 SS G_CDS: 0.22 Total: -60.69 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -87.46 3.87 -83.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194646569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.475 kcal (2) G-P(sol) polarization free energy of solvation -87.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds