Wall clock time and date at job start Tue Mar 31 2020 18:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47717 * 2 1 4 4 O 1.42908 * 109.46958 * 120.00258 * 2 1 3 5 5 C 1.50703 * 109.47261 * 239.99673 * 2 1 3 6 6 O 1.21279 * 119.99998 * 245.00264 * 5 2 1 7 7 N 1.34774 * 119.99607 * 65.00404 * 5 2 1 8 8 C 1.47080 * 120.88132 * 359.72458 * 7 5 2 9 9 C 1.53693 * 108.27959 * 128.75728 * 8 7 5 10 10 N 1.46900 * 109.25757 * 54.07682 * 9 8 7 11 11 C 1.46906 * 111.00086 * 172.61337 * 10 9 8 12 12 C 1.50698 * 109.46715 * 294.30220 * 11 10 9 13 13 C 1.38305 * 119.93286 * 269.72403 * 12 11 10 14 14 C 1.38095 * 120.07039 * 179.72715 * 13 12 11 15 15 C 1.38884 * 119.92997 * 0.54698 * 14 13 12 16 16 O 1.35750 * 120.06961 * 179.74949 * 15 14 13 17 17 C 1.34829 * 116.99832 * 174.44848 * 16 15 14 18 18 H 1.07997 * 120.00306 * 5.05079 * 17 16 15 19 19 C 1.38655 * 119.99629 * 185.05503 * 17 16 15 20 20 N 1.31559 * 120.00378 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47165 * 90.00306 * 21 19 17 23 23 H 1.48504 * 109.46907 * 209.99878 * 21 19 17 24 24 H 1.48500 * 109.47454 * 329.99616 * 21 19 17 25 25 C 1.38874 * 119.86057 * 359.73155 * 15 14 13 26 26 C 1.38099 * 119.93449 * 359.97438 * 25 15 14 27 27 C 1.46896 * 111.27152 * 296.76099 * 10 9 8 28 28 C 1.47077 * 120.88050 * 179.97438 * 7 5 2 29 29 H 1.09004 * 109.46748 * 59.99401 * 1 2 3 30 30 H 1.09002 * 109.46783 * 300.00348 * 1 2 3 31 31 H 1.08994 * 109.47717 * 179.97438 * 1 2 3 32 32 H 0.96700 * 113.99381 * 299.99459 * 4 2 1 33 33 H 1.09004 * 109.62615 * 248.51632 * 8 7 5 34 34 H 1.08995 * 109.63442 * 9.09947 * 8 7 5 35 35 H 1.09002 * 109.64398 * 294.08235 * 9 8 7 36 36 H 1.08993 * 109.42753 * 173.94757 * 9 8 7 37 37 H 1.08993 * 109.47221 * 54.30135 * 11 10 9 38 38 H 1.08998 * 109.47226 * 174.30282 * 11 10 9 39 39 H 1.08004 * 119.95998 * 0.02562 * 13 12 11 40 40 H 1.08004 * 120.03613 * 180.27481 * 14 13 12 41 41 H 0.96997 * 120.00512 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.03455 * 179.97438 * 25 15 14 43 43 H 1.07998 * 119.97081 * 180.02562 * 26 25 15 44 44 H 1.09009 * 109.49555 * 303.14370 * 27 10 9 45 45 H 1.09004 * 109.49486 * 183.06595 * 27 10 9 46 46 H 1.08999 * 109.63135 * 350.90185 * 28 7 5 47 47 H 1.09006 * 109.62663 * 111.47632 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7105 -1.2304 6 8 2.6529 -1.7467 -1.1214 7 7 1.7920 -0.1942 -2.4519 8 6 1.0363 1.0581 -2.6069 9 6 1.8492 2.0036 -3.5053 10 7 2.1759 1.3164 -4.7619 11 6 2.7999 2.2390 -5.7197 12 6 1.8011 3.2913 -6.1272 13 6 0.9847 3.0803 -7.2234 14 6 0.0646 4.0403 -7.5959 15 6 -0.0327 5.2235 -6.8752 16 8 -0.9327 6.1713 -7.2420 17 6 -1.0558 7.2437 -6.4341 18 1 -0.3968 7.3597 -5.5864 19 6 -2.0287 8.1974 -6.6915 20 7 -2.8313 8.0563 -7.7243 21 14 -2.1998 9.6828 -5.5718 22 1 -1.3399 10.7839 -6.0752 23 1 -3.6161 10.1292 -5.5546 24 1 -1.7796 9.3163 -4.1954 25 6 0.7925 5.4349 -5.7784 26 6 1.7065 4.4684 -5.4073 27 6 3.0324 0.1471 -4.5228 28 6 2.2736 -0.8710 -3.6656 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7210 -0.2701 1.9979 33 1 0.0715 0.8487 -3.0689 34 1 0.8857 1.5181 -1.6303 35 1 2.7702 2.2900 -2.9974 36 1 1.2599 2.8948 -3.7207 37 1 3.6621 2.7170 -5.2548 38 1 3.1231 1.6843 -6.6006 39 1 1.0637 2.1616 -7.7858 40 1 -0.5758 3.8730 -8.4494 41 1 -3.5122 8.7234 -7.9042 42 1 0.7195 6.3542 -5.2162 43 1 2.3482 4.6320 -4.5542 44 1 3.9369 0.4595 -4.0007 45 1 3.3010 -0.3080 -5.4761 46 1 2.9415 -1.6870 -3.3894 47 1 1.4256 -1.2626 -4.2275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270887900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:13 Heat of formation + Delta-G solvation = -65.823166 kcal Electronic energy + Delta-G solvation = -28695.444063 eV Core-core repulsion = 24651.561934 eV Total energy + Delta-G solvation = -4043.882130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.66533 -39.27965 -38.34123 -37.02410 -36.52013 -34.77311 -32.45174 -32.10041 -30.74279 -30.22267 -30.14427 -27.52517 -25.62572 -24.89199 -24.14792 -23.43200 -21.99883 -21.23751 -20.41357 -19.30702 -18.19146 -18.03129 -17.04814 -16.78248 -16.35728 -15.84819 -15.38492 -15.29281 -15.01937 -14.67814 -14.60645 -14.49817 -14.28790 -14.08734 -13.64571 -13.54664 -13.15956 -12.95054 -12.84084 -12.74043 -12.64741 -12.34003 -12.00880 -11.92953 -11.71336 -11.54595 -11.47715 -11.37491 -11.22187 -10.79478 -10.68022 -10.61101 -10.58708 -10.47170 -9.85028 -9.38860 -9.01359 -8.88661 -8.36818 -8.21452 -7.23467 -6.50057 -4.09135 2.15538 2.20587 2.33678 2.50023 3.08160 3.09088 3.13966 3.80371 3.86324 3.91884 4.19572 4.43471 4.53508 4.61054 4.68027 4.74107 4.87393 4.96710 5.04967 5.09595 5.17238 5.20958 5.23684 5.23909 5.35215 5.40010 5.52074 5.57731 5.63743 5.67263 5.69537 5.76157 5.82746 5.84744 6.15763 6.18104 6.36724 6.64852 6.82340 6.89254 6.91180 7.04816 7.07215 7.21015 7.22149 7.33247 7.39117 7.77152 7.90802 7.94651 8.95482 9.65572 10.67876 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002516 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.796991 B =11124.620636 C =12515.045948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.087 3.913 3 H 0.081 0.919 4 O -0.543 6.543 5 C 0.520 3.480 6 O -0.525 6.525 7 N -0.610 5.610 8 C 0.105 3.895 9 C 0.037 3.963 10 N -0.531 5.531 11 C 0.115 3.885 12 C -0.181 4.181 13 C -0.051 4.051 14 C -0.194 4.194 15 C 0.156 3.844 16 O -0.177 6.177 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.234 4.234 26 C -0.067 4.067 27 C 0.041 3.959 28 C 0.119 3.881 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.384 0.616 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.035 0.965 36 H 0.102 0.898 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.035 0.965 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -12.462 12.014 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.024 3.976 3 H 0.099 0.901 4 O -0.348 6.348 5 C 0.307 3.693 6 O -0.400 6.400 7 N -0.346 5.346 8 C -0.017 4.017 9 C -0.092 4.092 10 N -0.256 5.256 11 C -0.012 4.012 12 C -0.182 4.182 13 C -0.070 4.070 14 C -0.213 4.213 15 C 0.102 3.898 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.254 4.254 26 C -0.086 4.086 27 C -0.088 4.088 28 C -0.004 4.004 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.120 0.880 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.053 0.947 45 H 0.106 0.894 46 H 0.112 0.888 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.887 -13.439 11.133 19.151 hybrid contribution 0.317 1.649 1.297 2.122 sum 8.203 -11.790 12.430 18.995 Atomic orbital electron populations 1.22640 0.93887 1.04169 1.04157 1.21526 0.94493 0.95517 0.86026 0.90120 1.86615 1.76510 1.56760 1.14954 1.20202 0.79751 0.85319 0.84000 1.90702 1.39912 1.23398 1.86009 1.48114 1.55653 1.25340 1.05513 1.22223 0.95691 0.83615 1.00200 1.22652 0.99261 0.97627 0.89661 1.61999 1.44585 1.08127 1.10870 1.20795 0.93590 0.91985 0.94813 1.19036 1.03205 0.95961 1.00043 1.20448 0.93890 0.97086 0.95563 1.20229 1.03884 0.93553 1.03640 1.19403 0.89309 0.89048 0.92029 1.83983 1.50517 1.27233 1.46308 1.21311 1.18187 0.98106 1.09244 0.89092 1.25290 0.94965 0.98901 0.97332 1.70034 1.18272 1.35038 1.26302 0.85724 0.78103 0.80180 0.79487 1.19883 1.20228 1.19206 1.21109 1.01147 1.01539 1.01570 1.20577 0.97077 0.93163 0.97772 1.22479 0.94169 0.92271 0.99871 1.21710 0.99472 0.95085 0.84102 0.90037 0.90833 0.91035 0.76876 0.89751 0.89283 0.94719 0.88016 0.94930 0.90588 0.87074 0.86582 0.91970 0.85670 0.88010 0.94656 0.89370 0.88814 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 9.12 37.16 0.34 -0.92 16 2 C 0.09 0.76 3.16 -27.88 -0.09 0.67 16 3 H 0.08 0.55 7.41 -51.93 -0.39 0.16 16 4 O -0.54 -5.33 12.86 -55.09 -0.71 -6.03 16 5 C 0.52 6.35 7.13 -10.99 -0.08 6.27 16 6 O -0.53 -8.61 15.96 -14.30 -0.23 -8.84 16 7 N -0.61 -6.40 3.00 -172.21 -0.52 -6.91 16 8 C 0.11 0.95 5.10 -3.37 -0.02 0.93 16 9 C 0.04 0.39 5.35 -3.46 -0.02 0.37 16 10 N -0.53 -6.01 4.62 -235.49 -1.09 -7.10 16 11 C 0.11 1.39 5.12 -4.97 -0.03 1.37 16 12 C -0.18 -2.79 4.89 -104.57 -0.51 -3.30 16 13 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 14 C -0.19 -3.89 9.99 -39.39 -0.39 -4.29 16 15 C 0.16 3.59 6.65 -39.11 -0.26 3.33 16 16 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 17 C -0.39 -10.60 9.49 30.89 0.29 -10.30 16 18 H 0.09 2.26 5.20 -52.49 -0.27 1.98 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 21 Si 0.94 19.86 29.55 -169.99 -5.02 14.84 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.23 -4.74 9.17 -39.40 -0.36 -5.10 16 26 C -0.07 -1.11 7.85 -39.61 -0.31 -1.42 16 27 C 0.04 0.40 5.62 -3.72 -0.02 0.38 16 28 C 0.12 1.21 6.59 -3.63 -0.02 1.18 16 29 H 0.08 0.50 5.43 -51.93 -0.28 0.22 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.38 1.64 9.08 45.56 0.41 2.05 16 33 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.09 0.60 4.83 -51.93 -0.25 0.35 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 1.22 5.65 -51.93 -0.29 0.93 16 37 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 38 H 0.08 0.85 7.91 -51.93 -0.41 0.44 16 39 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.56 5.64 -52.48 -0.30 2.26 16 43 H 0.10 1.43 7.93 -52.49 -0.42 1.01 16 44 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.09 0.74 7.99 -51.93 -0.41 0.33 16 46 H 0.09 1.02 7.06 -51.93 -0.37 0.65 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -34.15 376.63 -9.00 -43.15 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.91 Total: 5.18 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.96 Total: -11.09 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.85 Total: -37.97 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.94 Total: -19.78 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.15 -9.00 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270887900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.677 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds