Wall clock time and date at job start Tue Mar 31 2020 18:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47717 * 2 1 4 4 O 1.42908 * 109.46958 * 120.00258 * 2 1 3 5 5 C 1.50703 * 109.47261 * 239.99673 * 2 1 3 6 6 O 1.21279 * 119.99998 * 245.00264 * 5 2 1 7 7 N 1.34774 * 119.99607 * 65.00404 * 5 2 1 8 8 C 1.47080 * 120.88132 * 359.72458 * 7 5 2 9 9 C 1.53693 * 108.27959 * 128.75728 * 8 7 5 10 10 N 1.46900 * 109.25757 * 54.07682 * 9 8 7 11 11 C 1.46906 * 111.00086 * 172.61337 * 10 9 8 12 12 C 1.50698 * 109.46715 * 294.30220 * 11 10 9 13 13 C 1.38305 * 119.93286 * 269.72403 * 12 11 10 14 14 C 1.38095 * 120.07039 * 179.72715 * 13 12 11 15 15 C 1.38884 * 119.92997 * 0.54698 * 14 13 12 16 16 O 1.35750 * 120.06961 * 179.74949 * 15 14 13 17 17 C 1.34829 * 116.99832 * 174.44848 * 16 15 14 18 18 H 1.07997 * 120.00306 * 5.05079 * 17 16 15 19 19 C 1.38655 * 119.99629 * 185.05503 * 17 16 15 20 20 N 1.31559 * 120.00378 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47165 * 90.00306 * 21 19 17 23 23 H 1.48504 * 109.46907 * 209.99878 * 21 19 17 24 24 H 1.48500 * 109.47454 * 329.99616 * 21 19 17 25 25 C 1.38874 * 119.86057 * 359.73155 * 15 14 13 26 26 C 1.38099 * 119.93449 * 359.97438 * 25 15 14 27 27 C 1.46896 * 111.27152 * 296.76099 * 10 9 8 28 28 C 1.47077 * 120.88050 * 179.97438 * 7 5 2 29 29 H 1.09004 * 109.46748 * 59.99401 * 1 2 3 30 30 H 1.09002 * 109.46783 * 300.00348 * 1 2 3 31 31 H 1.08994 * 109.47717 * 179.97438 * 1 2 3 32 32 H 0.96700 * 113.99381 * 299.99459 * 4 2 1 33 33 H 1.09004 * 109.62615 * 248.51632 * 8 7 5 34 34 H 1.08995 * 109.63442 * 9.09947 * 8 7 5 35 35 H 1.09002 * 109.64398 * 294.08235 * 9 8 7 36 36 H 1.08993 * 109.42753 * 173.94757 * 9 8 7 37 37 H 1.08993 * 109.47221 * 54.30135 * 11 10 9 38 38 H 1.08998 * 109.47226 * 174.30282 * 11 10 9 39 39 H 1.08004 * 119.95998 * 0.02562 * 13 12 11 40 40 H 1.08004 * 120.03613 * 180.27481 * 14 13 12 41 41 H 0.96997 * 120.00512 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.03455 * 179.97438 * 25 15 14 43 43 H 1.07998 * 119.97081 * 180.02562 * 26 25 15 44 44 H 1.09009 * 109.49555 * 303.14370 * 27 10 9 45 45 H 1.09004 * 109.49486 * 183.06595 * 27 10 9 46 46 H 1.08999 * 109.63135 * 350.90185 * 28 7 5 47 47 H 1.09006 * 109.62663 * 111.47632 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7105 -1.2304 6 8 2.6529 -1.7467 -1.1214 7 7 1.7920 -0.1942 -2.4519 8 6 1.0363 1.0581 -2.6069 9 6 1.8492 2.0036 -3.5053 10 7 2.1759 1.3164 -4.7619 11 6 2.7999 2.2390 -5.7197 12 6 1.8011 3.2913 -6.1272 13 6 0.9847 3.0803 -7.2234 14 6 0.0646 4.0403 -7.5959 15 6 -0.0327 5.2235 -6.8752 16 8 -0.9327 6.1713 -7.2420 17 6 -1.0558 7.2437 -6.4341 18 1 -0.3968 7.3597 -5.5864 19 6 -2.0287 8.1974 -6.6915 20 7 -2.8313 8.0563 -7.7243 21 14 -2.1998 9.6828 -5.5718 22 1 -1.3399 10.7839 -6.0752 23 1 -3.6161 10.1292 -5.5546 24 1 -1.7796 9.3163 -4.1954 25 6 0.7925 5.4349 -5.7784 26 6 1.7065 4.4684 -5.4073 27 6 3.0324 0.1471 -4.5228 28 6 2.2736 -0.8710 -3.6656 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7210 -0.2701 1.9979 33 1 0.0715 0.8487 -3.0689 34 1 0.8857 1.5181 -1.6303 35 1 2.7702 2.2900 -2.9974 36 1 1.2599 2.8948 -3.7207 37 1 3.6621 2.7170 -5.2548 38 1 3.1231 1.6843 -6.6006 39 1 1.0637 2.1616 -7.7858 40 1 -0.5758 3.8730 -8.4494 41 1 -3.5122 8.7234 -7.9042 42 1 0.7195 6.3542 -5.2162 43 1 2.3482 4.6320 -4.5542 44 1 3.9369 0.4595 -4.0007 45 1 3.3010 -0.3080 -5.4761 46 1 2.9415 -1.6870 -3.3894 47 1 1.4256 -1.2626 -4.2275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270887900.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:12 Heat of formation + Delta-G solvation = -91.169154 kcal Electronic energy + Delta-G solvation = -28696.543148 eV Core-core repulsion = 24651.561934 eV Total energy + Delta-G solvation = -4044.981214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52835 -40.77891 -39.44749 -38.14136 -37.62708 -35.79346 -34.26441 -32.97698 -31.79373 -31.52657 -31.24237 -28.61349 -27.36991 -25.85663 -24.97907 -24.42627 -23.49753 -22.15527 -21.77423 -20.12274 -19.79148 -18.91291 -18.76658 -17.60708 -17.22583 -16.63666 -16.54429 -16.44911 -16.22226 -15.99938 -15.82039 -15.40314 -15.33990 -15.30398 -15.15747 -14.86313 -14.35905 -14.14599 -13.97087 -13.71925 -13.54211 -13.36111 -13.23126 -12.99500 -12.83271 -12.69518 -12.50153 -12.42558 -12.28760 -12.21030 -12.10834 -12.02688 -11.78286 -11.22641 -11.12402 -10.76599 -10.72715 -9.89920 -9.69655 -9.26224 -8.84504 -8.44223 -6.12073 0.65431 0.72031 1.37159 1.45228 1.46144 1.54368 1.72816 2.19818 2.74075 3.02596 3.19886 3.31872 3.56735 3.57667 3.82928 3.88013 3.92145 4.02279 4.04247 4.08860 4.22274 4.24735 4.28248 4.35941 4.48310 4.54739 4.66286 4.69435 4.71975 4.76583 4.78056 4.83548 4.85687 4.89138 5.04159 5.13810 5.16962 5.19149 5.35254 5.37752 5.62596 5.76199 5.83574 6.01336 6.06385 6.12518 6.26168 6.29871 6.79638 7.00922 7.03841 7.83222 8.79181 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.002516 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.796991 B =11124.620636 C =12515.045948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.108 0.892 4 O -0.571 6.571 5 C 0.511 3.489 6 O -0.578 6.578 7 N -0.606 5.606 8 C 0.107 3.893 9 C 0.035 3.965 10 N -0.540 5.540 11 C 0.117 3.883 12 C -0.151 4.151 13 C -0.045 4.045 14 C -0.207 4.207 15 C 0.114 3.886 16 O -0.235 6.235 17 C -0.410 4.410 18 H 0.103 0.897 19 C -0.024 4.024 20 N -0.923 5.923 21 Si 1.017 2.983 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.250 1.250 25 C -0.240 4.240 26 C -0.059 4.059 27 C 0.050 3.950 28 C 0.116 3.884 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.108 0.892 41 H 0.272 0.728 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.034 0.966 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.838 -13.011 14.146 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.026 3.974 3 H 0.125 0.875 4 O -0.380 6.380 5 C 0.299 3.701 6 O -0.457 6.457 7 N -0.340 5.340 8 C -0.015 4.015 9 C -0.093 4.093 10 N -0.264 5.264 11 C -0.009 4.009 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.226 4.226 15 C 0.064 3.936 16 O -0.142 6.142 17 C -0.486 4.486 18 H 0.120 0.880 19 C -0.221 4.221 20 N -0.561 5.561 21 Si 0.836 3.164 22 H -0.190 1.190 23 H -0.198 1.198 24 H -0.173 1.173 25 C -0.260 4.260 26 C -0.078 4.078 27 C -0.079 4.079 28 C -0.007 4.007 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.257 0.743 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.052 0.948 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.696 -14.007 13.285 21.603 hybrid contribution -0.006 1.484 0.665 1.626 sum 9.690 -12.523 13.950 21.103 Atomic orbital electron populations 1.22610 0.92201 1.03582 1.05772 1.21622 0.95592 0.95833 0.84309 0.87502 1.86565 1.77146 1.57950 1.16371 1.20956 0.78915 0.84865 0.85334 1.90673 1.42438 1.25768 1.86812 1.48201 1.55054 1.25506 1.05276 1.22333 0.95035 0.82741 1.01394 1.22667 0.99554 0.97421 0.89683 1.61931 1.45002 1.08312 1.11202 1.20801 0.92599 0.91450 0.96093 1.19509 1.01730 0.96013 0.97998 1.20814 0.92504 0.97110 0.95933 1.20456 1.04960 0.93679 1.03496 1.19949 0.89966 0.89605 0.94086 1.83948 1.53328 1.28753 1.48129 1.21809 1.18643 0.98492 1.09668 0.87958 1.26572 0.94375 1.02185 0.99004 1.70187 1.19965 1.36856 1.29122 0.84608 0.78190 0.75727 0.77844 1.19036 1.19833 1.17326 1.21197 1.01653 1.02327 1.00780 1.20897 0.96064 0.92336 0.98468 1.22441 0.93492 0.91340 1.00594 1.21730 0.99552 0.95163 0.84231 0.89426 0.88172 0.92729 0.74344 0.89797 0.86730 0.93996 0.89185 0.93573 0.88694 0.83852 0.87371 0.91948 0.86478 0.84626 0.94801 0.87627 0.89880 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.12 71.98 0.66 -1.25 16 2 C 0.09 1.32 3.16 29.85 0.09 1.42 16 3 H 0.11 1.03 7.41 -2.39 -0.02 1.02 16 4 O -0.57 -10.19 12.86 -129.99 -1.67 -11.86 16 5 C 0.51 11.70 7.13 87.66 0.62 12.32 16 6 O -0.58 -18.87 15.96 15.96 0.25 -18.62 16 7 N -0.61 -11.31 3.00 -817.14 -2.45 -13.76 16 8 C 0.11 1.57 5.10 86.50 0.44 2.01 16 9 C 0.04 0.61 5.35 86.54 0.46 1.07 16 10 N -0.54 -9.97 4.62 -898.97 -4.15 -14.12 16 11 C 0.12 2.27 5.12 85.56 0.44 2.71 16 12 C -0.15 -4.10 4.89 -19.83 -0.10 -4.20 16 13 C -0.05 -1.39 9.69 22.25 0.22 -1.17 16 14 C -0.21 -8.37 9.99 22.39 0.22 -8.14 16 15 C 0.11 5.42 6.65 22.58 0.15 5.57 16 16 O -0.23 -13.77 9.76 -22.73 -0.22 -14.00 16 17 C -0.41 -23.15 9.49 67.92 0.64 -22.51 16 18 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 20 N -0.92 -55.89 13.67 21.61 0.30 -55.59 16 21 Si 1.02 41.54 29.55 68.60 2.03 43.57 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 25 C -0.24 -9.64 9.17 22.39 0.21 -9.44 16 26 C -0.06 -1.78 7.85 22.25 0.17 -1.60 16 27 C 0.05 0.79 5.62 86.37 0.48 1.28 16 28 C 0.12 2.11 6.59 86.34 0.57 2.68 16 29 H 0.09 0.79 5.43 -2.39 -0.01 0.78 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.41 2.53 9.08 -74.06 -0.67 1.86 16 33 H 0.08 1.29 8.13 -2.38 -0.02 1.27 16 34 H 0.11 1.09 4.83 -2.39 -0.01 1.08 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 1.81 5.65 -2.39 -0.01 1.79 16 37 H 0.05 0.83 8.07 -2.39 -0.02 0.81 16 38 H 0.09 1.58 7.91 -2.39 -0.02 1.56 16 39 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 40 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.12 4.81 5.64 -2.91 -0.02 4.80 16 43 H 0.14 3.20 7.93 -2.91 -0.02 3.18 16 44 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.11 1.34 7.99 -2.39 -0.02 1.32 16 46 H 0.08 1.73 7.06 -2.39 -0.02 1.71 16 47 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -80.55 376.63 0.16 -80.39 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.33 Total: 24.13 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 5.76 Total: -20.12 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -6.31 Total: -83.47 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.64 Total: -44.48 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -80.55 0.16 -80.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270887900.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.783 kcal (2) G-P(sol) polarization free energy of solvation -80.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds