Wall clock time and date at job start Tue Mar 31 2020 18:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.50703 * 109.47438 * 119.99516 * 2 1 3 5 5 O 1.21283 * 119.99412 * 98.12822 * 4 2 1 6 6 N 1.34775 * 120.00089 * 278.12782 * 4 2 1 7 7 C 1.46497 * 120.00282 * 3.50937 * 6 4 2 8 8 C 1.50695 * 109.46894 * 265.35586 * 7 6 4 9 9 H 1.08007 * 120.00384 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00006 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00071 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46944 * 89.99731 * 12 10 8 14 14 H 1.48500 * 109.46893 * 209.99938 * 12 10 8 15 15 H 1.48495 * 109.46778 * 330.00152 * 12 10 8 16 16 C 1.39930 * 119.99499 * 183.50757 * 6 4 2 17 17 C 1.38873 * 120.06610 * 173.13689 * 16 6 4 18 18 C 1.38112 * 119.92400 * 180.02562 * 17 16 6 19 19 C 1.38277 * 120.07252 * 359.97438 * 18 17 16 20 20 C 1.38280 * 120.14225 * 0.25055 * 19 18 17 21 21 C 1.38110 * 120.07042 * 359.49474 * 20 19 18 22 22 N 1.46892 * 109.47007 * 240.00022 * 2 1 3 23 23 C 1.48566 * 111.00245 * 59.99778 * 22 2 1 24 24 C 1.54377 * 104.59550 * 159.03860 * 23 22 2 25 25 H 1.08994 * 110.32278 * 95.04477 * 24 23 22 26 26 O 1.42900 * 110.32113 * 217.25282 * 24 23 22 27 27 C 1.54257 * 105.06410 * 336.14624 * 24 23 22 28 28 H 1.08997 * 110.32469 * 118.89119 * 27 24 23 29 29 O 1.42899 * 110.32783 * 241.10849 * 27 24 23 30 30 C 1.48559 * 111.00162 * 175.41287 * 22 2 1 31 31 H 1.09005 * 109.46612 * 293.24699 * 1 2 3 32 32 H 1.08998 * 109.47439 * 53.24497 * 1 2 3 33 33 H 1.09003 * 109.46742 * 173.25009 * 1 2 3 34 34 H 1.09000 * 109.47411 * 25.35353 * 7 6 4 35 35 H 1.08994 * 109.47138 * 145.35613 * 7 6 4 36 36 H 0.97005 * 120.00088 * 179.97438 * 11 10 8 37 37 H 1.08003 * 120.03495 * 359.97438 * 17 16 6 38 38 H 1.08000 * 119.95941 * 179.97438 * 18 17 16 39 39 H 1.08005 * 119.92675 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.96480 * 179.74636 * 20 19 18 41 41 H 1.08000 * 120.03687 * 180.25479 * 21 20 19 42 42 H 1.09002 * 110.41135 * 277.81902 * 23 22 2 43 43 H 1.09000 * 110.40656 * 40.13745 * 23 22 2 44 44 H 0.96701 * 113.99898 * 298.54104 * 26 24 23 45 45 H 0.96699 * 114.00096 * 180.02562 * 29 27 24 46 46 H 1.09003 * 110.41069 * 319.74247 * 30 22 2 47 47 H 1.09000 * 110.41028 * 82.17884 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 8 2.3746 -1.8719 1.1629 6 7 2.1016 -0.0547 2.4061 7 6 1.6166 1.3241 2.5055 8 6 2.7676 2.2767 2.3088 9 1 3.7611 1.8934 2.1281 10 6 2.5524 3.6376 2.3593 11 7 1.3426 4.1044 2.5787 12 14 3.9790 4.8186 2.1147 13 1 4.1106 5.1437 0.6717 14 1 3.7270 6.0648 2.8820 15 1 5.2333 4.1860 2.5960 16 6 2.6365 -0.6912 3.5316 17 6 2.8404 0.0243 4.7042 18 6 3.3691 -0.6067 5.8132 19 6 3.6946 -1.9494 5.7570 20 6 3.4971 -2.6635 4.5894 21 6 2.9639 -2.0397 3.4785 22 7 2.0197 -0.6925 -1.1994 23 6 1.5433 -0.0188 -2.4349 24 6 2.5247 -0.4812 -3.5332 25 1 2.1193 -1.3417 -4.0653 26 8 2.7894 0.5875 -4.4441 27 6 3.8124 -0.8747 -2.7804 28 1 4.0389 -1.9284 -2.9429 29 8 4.9056 -0.0592 -3.2069 30 6 3.5005 -0.6170 -1.2905 31 1 -0.3633 0.4056 0.9443 32 1 -0.3634 0.6149 -0.8233 33 1 -0.3633 -1.0206 -0.1208 34 1 0.8635 1.5007 1.7375 35 1 1.1765 1.4843 3.4897 36 1 1.1913 5.0619 2.6146 37 1 2.5867 1.0731 4.7486 38 1 3.5283 -0.0508 6.7253 39 1 4.1083 -2.4404 6.6255 40 1 3.7562 -3.7111 4.5474 41 1 2.8060 -2.5989 2.5682 42 1 0.5283 -0.3365 -2.6738 43 1 1.5841 1.0640 -2.3173 44 1 2.0067 0.9070 -4.9137 45 1 5.7426 -0.2621 -2.7671 46 1 3.8497 0.3723 -0.9946 47 1 3.9593 -1.3850 -0.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278930649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:39 Heat of formation + Delta-G solvation = -70.394836 kcal Electronic energy + Delta-G solvation = -30401.366270 eV Core-core repulsion = 26357.285898 eV Total energy + Delta-G solvation = -4044.080372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55987 -39.36792 -37.81687 -35.88851 -35.85656 -35.32960 -32.76906 -32.18685 -30.30251 -29.35042 -28.37532 -27.61198 -27.33922 -24.24727 -23.34997 -22.47028 -21.68269 -20.82438 -20.44074 -18.89058 -18.06851 -17.07530 -16.87974 -16.41706 -16.31113 -16.08713 -15.50707 -14.94244 -14.67238 -14.41275 -14.38613 -14.03268 -13.95058 -13.56653 -13.33572 -13.04241 -12.76116 -12.69986 -12.54176 -12.40041 -12.18828 -11.94656 -11.75633 -11.56514 -11.43525 -11.24560 -11.18151 -11.10094 -10.79827 -10.59510 -10.56918 -10.33369 -10.20539 -10.11690 -9.81281 -9.23456 -8.77196 -8.66240 -8.34655 -8.29891 -7.22718 -6.33366 -4.42522 1.85552 2.00885 3.11188 3.15313 3.23109 3.27847 3.42451 3.83882 4.21016 4.25643 4.35465 4.48399 4.57666 4.65494 4.95273 5.00901 5.10207 5.30421 5.33749 5.45550 5.46816 5.51076 5.58270 5.68492 5.71141 5.78707 5.89018 5.93288 6.03708 6.04923 6.07019 6.15289 6.18190 6.32142 6.53032 6.73804 6.78681 6.81115 6.95813 7.03697 7.06058 7.13048 7.28290 7.51611 7.58964 7.77026 7.81336 7.82608 8.07176 8.61175 8.75574 9.26205 10.72591 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.005068 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.167053 B = 5523.689931 C = 7321.996050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 H 0.091 0.909 4 C 0.525 3.475 5 O -0.525 6.525 6 N -0.534 5.534 7 C 0.223 3.777 8 C -0.542 4.542 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.170 3.830 17 C -0.143 4.143 18 C -0.106 4.106 19 C -0.162 4.162 20 C -0.110 4.110 21 C -0.181 4.181 22 N -0.479 5.479 23 C -0.002 4.002 24 C 0.108 3.892 25 H 0.073 0.927 26 O -0.542 6.542 27 C 0.109 3.891 28 H 0.073 0.927 29 O -0.543 6.543 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.268 0.732 37 H 0.139 0.861 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.178 0.822 42 H 0.088 0.912 43 H 0.062 0.938 44 H 0.372 0.628 45 H 0.374 0.626 46 H 0.061 0.939 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -8.579 -5.812 10.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 H 0.109 0.891 4 C 0.315 3.685 5 O -0.404 6.404 6 N -0.254 5.254 7 C 0.104 3.896 8 C -0.581 4.581 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.722 3.278 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.196 1.196 16 C 0.074 3.926 17 C -0.163 4.163 18 C -0.125 4.125 19 C -0.181 4.181 20 C -0.129 4.129 21 C -0.201 4.201 22 N -0.205 5.205 23 C -0.130 4.130 24 C 0.048 3.952 25 H 0.091 0.909 26 O -0.345 6.345 27 C 0.049 3.951 28 H 0.091 0.909 29 O -0.347 6.347 30 C -0.131 4.131 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.195 0.805 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.218 0.782 45 H 0.220 0.780 46 H 0.079 0.921 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.235 -9.303 -6.027 11.087 hybrid contribution 0.825 1.676 0.397 1.910 sum 0.590 -7.627 -5.630 9.498 Atomic orbital electron populations 1.21801 0.91899 1.02753 1.03284 1.21818 0.97442 0.97703 0.88573 0.89136 1.20395 0.77639 0.86253 0.84251 1.90240 1.48957 1.16783 1.84445 1.46005 1.55990 1.16352 1.07012 1.19807 0.95920 0.74182 0.99662 1.21356 0.94742 0.90747 1.51227 0.92000 1.24902 0.96008 0.98119 0.94375 1.69906 1.20294 1.14307 1.47922 0.86514 0.82433 0.80277 0.78527 1.20298 1.20837 1.19619 1.18074 0.95700 0.91710 0.87154 1.21148 1.02142 1.01036 0.91994 1.20863 0.99240 0.94592 0.97803 1.20977 1.04193 0.94856 0.98068 1.21015 0.99546 0.99210 0.93101 1.22758 1.01324 0.94084 1.01915 1.65246 1.06248 1.48768 1.00283 1.23948 0.99614 0.98683 0.90771 1.22598 0.93472 0.89813 0.89269 0.90883 1.86731 1.36729 1.53009 1.58029 1.22586 0.86592 0.94015 0.91924 0.90910 1.86685 1.19426 1.61514 1.67032 1.23973 0.89762 1.02481 0.96910 0.90761 0.91639 0.91456 0.93045 0.93716 0.92259 0.84316 0.86563 0.87224 0.86862 0.80538 0.89387 0.91985 0.78187 0.77990 0.92088 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.50 37.16 0.32 -1.81 16 2 C 0.06 0.98 1.39 -68.87 -0.10 0.89 16 3 H 0.09 1.80 6.73 -51.93 -0.35 1.45 16 4 C 0.53 10.45 6.25 -10.98 -0.07 10.39 16 5 O -0.53 -10.86 12.02 5.55 0.07 -10.79 16 6 N -0.53 -11.25 2.69 -114.74 -0.31 -11.56 16 7 C 0.22 5.06 4.06 -5.20 -0.02 5.04 16 8 C -0.54 -13.53 8.53 -34.44 -0.29 -13.82 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 12 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 16 C 0.17 3.50 6.48 -83.69 -0.54 2.96 16 17 C -0.14 -2.82 9.05 -39.39 -0.36 -3.18 16 18 C -0.11 -1.80 10.04 -39.61 -0.40 -2.20 16 19 C -0.16 -2.55 10.04 -39.55 -0.40 -2.95 16 20 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 21 C -0.18 -3.49 9.04 -39.39 -0.36 -3.85 16 22 N -0.48 -7.50 4.87 -223.40 -1.09 -8.59 16 23 C 0.00 -0.02 5.11 -2.18 -0.01 -0.03 16 24 C 0.11 1.35 4.42 -25.35 -0.11 1.24 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 O -0.54 -7.09 12.45 -56.60 -0.70 -7.80 16 27 C 0.11 1.47 4.42 -25.35 -0.11 1.36 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.54 -7.74 12.44 -56.60 -0.70 -8.45 16 30 C 0.00 -0.05 5.47 -2.18 -0.01 -0.06 16 31 H 0.07 1.20 6.50 -51.93 -0.34 0.86 16 32 H 0.06 0.86 7.31 -51.93 -0.38 0.48 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 1.16 4.76 -51.93 -0.25 0.92 16 35 H 0.04 1.07 6.79 -51.93 -0.35 0.72 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.14 2.93 6.16 -52.48 -0.32 2.61 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.18 3.56 4.54 -56.17 -0.26 3.31 16 42 H 0.09 0.96 7.82 -51.93 -0.41 0.56 16 43 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 44 H 0.37 3.05 9.11 45.56 0.41 3.46 16 45 H 0.37 3.76 9.12 45.56 0.42 4.18 16 46 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 47 H 0.09 1.53 7.35 -51.93 -0.38 1.15 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -30.44 373.57 -9.45 -39.89 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -5.10 Total: 15.60 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.96 Total: -6.56 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.66 Total: -42.69 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.34 Total: -27.04 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.44 -9.45 -39.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.504 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds