Wall clock time and date at job start Tue Mar 31 2020 18:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46866 * 2 1 4 4 C 1.50703 * 109.47438 * 119.99516 * 2 1 3 5 5 O 1.21283 * 119.99412 * 98.12822 * 4 2 1 6 6 N 1.34775 * 120.00089 * 278.12782 * 4 2 1 7 7 C 1.46497 * 120.00282 * 3.50937 * 6 4 2 8 8 C 1.50695 * 109.46894 * 265.35586 * 7 6 4 9 9 H 1.08007 * 120.00384 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00006 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00071 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 120.00202 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46944 * 89.99731 * 12 10 8 14 14 H 1.48500 * 109.46893 * 209.99938 * 12 10 8 15 15 H 1.48495 * 109.46778 * 330.00152 * 12 10 8 16 16 C 1.39930 * 119.99499 * 183.50757 * 6 4 2 17 17 C 1.38873 * 120.06610 * 173.13689 * 16 6 4 18 18 C 1.38112 * 119.92400 * 180.02562 * 17 16 6 19 19 C 1.38277 * 120.07252 * 359.97438 * 18 17 16 20 20 C 1.38280 * 120.14225 * 0.25055 * 19 18 17 21 21 C 1.38110 * 120.07042 * 359.49474 * 20 19 18 22 22 N 1.46892 * 109.47007 * 240.00022 * 2 1 3 23 23 C 1.48566 * 111.00245 * 59.99778 * 22 2 1 24 24 C 1.54377 * 104.59550 * 159.03860 * 23 22 2 25 25 H 1.08994 * 110.32278 * 95.04477 * 24 23 22 26 26 O 1.42900 * 110.32113 * 217.25282 * 24 23 22 27 27 C 1.54257 * 105.06410 * 336.14624 * 24 23 22 28 28 H 1.08997 * 110.32469 * 118.89119 * 27 24 23 29 29 O 1.42899 * 110.32783 * 241.10849 * 27 24 23 30 30 C 1.48559 * 111.00162 * 175.41287 * 22 2 1 31 31 H 1.09005 * 109.46612 * 293.24699 * 1 2 3 32 32 H 1.08998 * 109.47439 * 53.24497 * 1 2 3 33 33 H 1.09003 * 109.46742 * 173.25009 * 1 2 3 34 34 H 1.09000 * 109.47411 * 25.35353 * 7 6 4 35 35 H 1.08994 * 109.47138 * 145.35613 * 7 6 4 36 36 H 0.97005 * 120.00088 * 179.97438 * 11 10 8 37 37 H 1.08003 * 120.03495 * 359.97438 * 17 16 6 38 38 H 1.08000 * 119.95941 * 179.97438 * 18 17 16 39 39 H 1.08005 * 119.92675 * 179.97438 * 19 18 17 40 40 H 1.07998 * 119.96480 * 179.74636 * 20 19 18 41 41 H 1.08000 * 120.03687 * 180.25479 * 21 20 19 42 42 H 1.09002 * 110.41135 * 277.81902 * 23 22 2 43 43 H 1.09000 * 110.40656 * 40.13745 * 23 22 2 44 44 H 0.96701 * 113.99898 * 298.54104 * 26 24 23 45 45 H 0.96699 * 114.00096 * 180.02562 * 29 27 24 46 46 H 1.09003 * 110.41069 * 319.74247 * 30 22 2 47 47 H 1.09000 * 110.41028 * 82.17884 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2305 5 8 2.3746 -1.8719 1.1629 6 7 2.1016 -0.0547 2.4061 7 6 1.6166 1.3241 2.5055 8 6 2.7676 2.2767 2.3088 9 1 3.7611 1.8934 2.1281 10 6 2.5524 3.6376 2.3593 11 7 1.3426 4.1044 2.5787 12 14 3.9790 4.8186 2.1147 13 1 4.1106 5.1437 0.6717 14 1 3.7270 6.0648 2.8820 15 1 5.2333 4.1860 2.5960 16 6 2.6365 -0.6912 3.5316 17 6 2.8404 0.0243 4.7042 18 6 3.3691 -0.6067 5.8132 19 6 3.6946 -1.9494 5.7570 20 6 3.4971 -2.6635 4.5894 21 6 2.9639 -2.0397 3.4785 22 7 2.0197 -0.6925 -1.1994 23 6 1.5433 -0.0188 -2.4349 24 6 2.5247 -0.4812 -3.5332 25 1 2.1193 -1.3417 -4.0653 26 8 2.7894 0.5875 -4.4441 27 6 3.8124 -0.8747 -2.7804 28 1 4.0389 -1.9284 -2.9429 29 8 4.9056 -0.0592 -3.2069 30 6 3.5005 -0.6170 -1.2905 31 1 -0.3633 0.4056 0.9443 32 1 -0.3634 0.6149 -0.8233 33 1 -0.3633 -1.0206 -0.1208 34 1 0.8635 1.5007 1.7375 35 1 1.1765 1.4843 3.4897 36 1 1.1913 5.0619 2.6146 37 1 2.5867 1.0731 4.7486 38 1 3.5283 -0.0508 6.7253 39 1 4.1083 -2.4404 6.6255 40 1 3.7562 -3.7111 4.5474 41 1 2.8060 -2.5989 2.5682 42 1 0.5283 -0.3365 -2.6738 43 1 1.5841 1.0640 -2.3173 44 1 2.0067 0.9070 -4.9137 45 1 5.7426 -0.2621 -2.7671 46 1 3.8497 0.3723 -0.9946 47 1 3.9593 -1.3850 -0.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278930649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:38 Heat of formation + Delta-G solvation = -93.416332 kcal Electronic energy + Delta-G solvation = -30402.364557 eV Core-core repulsion = 26357.285898 eV Total energy + Delta-G solvation = -4045.078659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.04739 -40.57184 -39.19864 -37.10143 -36.99110 -36.87235 -34.68409 -33.45375 -31.73351 -30.82238 -29.50437 -29.20258 -28.73079 -25.70021 -25.08979 -23.81350 -23.06602 -22.16841 -21.53717 -20.35738 -19.14834 -18.84852 -18.50815 -17.99466 -17.42571 -17.22924 -16.94725 -16.44804 -16.38375 -15.80945 -15.52010 -15.41515 -15.17928 -14.92827 -14.71500 -14.45686 -14.34620 -14.20641 -13.87256 -13.63409 -13.53205 -13.47659 -13.19797 -13.02961 -12.88464 -12.71364 -12.65769 -12.46013 -12.41416 -12.26371 -12.01748 -11.83781 -11.61553 -11.25384 -10.92813 -10.83614 -10.71476 -10.17327 -9.76569 -9.66057 -8.79740 -8.29184 -6.45654 0.41536 0.58318 1.32700 1.35668 1.43645 1.60934 1.94335 2.31488 2.64500 2.99079 3.04530 3.23832 3.29552 3.37142 3.54962 3.71069 4.03438 4.10009 4.12481 4.16457 4.18717 4.21234 4.41373 4.44080 4.50961 4.56233 4.60988 4.65676 4.67952 4.75770 4.78528 4.82279 4.91334 4.94043 4.99119 5.15954 5.26571 5.41297 5.56194 5.58874 5.63027 5.68285 5.72372 5.81220 5.88818 6.32552 6.40614 6.66542 6.70834 6.96268 7.13194 7.26256 8.74214 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.005068 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.167053 B = 5523.689931 C = 7321.996050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.060 0.940 4 C 0.520 3.480 5 O -0.535 6.535 6 N -0.542 5.542 7 C 0.241 3.759 8 C -0.545 4.545 9 H 0.043 0.957 10 C 0.032 3.968 11 N -0.910 5.910 12 Si 0.948 3.052 13 H -0.275 1.275 14 H -0.274 1.274 15 H -0.275 1.275 16 C 0.138 3.862 17 C -0.165 4.165 18 C -0.104 4.104 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.196 4.196 22 N -0.479 5.479 23 C 0.000 4.000 24 C 0.111 3.889 25 H 0.104 0.896 26 O -0.563 6.563 27 C 0.109 3.891 28 H 0.095 0.905 29 O -0.561 6.561 30 C 0.001 3.999 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.026 0.974 36 H 0.271 0.729 37 H 0.114 0.886 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.167 0.833 42 H 0.117 0.883 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.388 0.612 46 H 0.030 0.970 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 -9.957 -6.035 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.049 4.049 3 H 0.078 0.922 4 C 0.310 3.690 5 O -0.415 6.415 6 N -0.261 5.261 7 C 0.122 3.878 8 C -0.583 4.583 9 H 0.061 0.939 10 C -0.169 4.169 11 N -0.548 5.548 12 Si 0.773 3.227 13 H -0.201 1.201 14 H -0.199 1.199 15 H -0.200 1.200 16 C 0.043 3.957 17 C -0.186 4.186 18 C -0.122 4.122 19 C -0.168 4.168 20 C -0.123 4.123 21 C -0.216 4.216 22 N -0.205 5.205 23 C -0.128 4.128 24 C 0.052 3.948 25 H 0.122 0.878 26 O -0.369 6.369 27 C 0.049 3.951 28 H 0.113 0.887 29 O -0.367 6.367 30 C -0.128 4.128 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.184 0.816 42 H 0.135 0.865 43 H 0.064 0.936 44 H 0.242 0.758 45 H 0.237 0.763 46 H 0.048 0.952 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.123 -10.687 -6.252 12.383 hybrid contribution 0.761 2.035 0.536 2.238 sum 0.885 -8.653 -5.717 10.408 Atomic orbital electron populations 1.21773 0.89994 1.03817 1.03454 1.21713 0.98860 0.95717 0.88594 0.92223 1.20820 0.77314 0.86330 0.84538 1.90228 1.49447 1.17121 1.84675 1.45968 1.56496 1.15716 1.07939 1.19423 0.95066 0.75029 0.98323 1.21403 0.94466 0.91492 1.50975 0.93865 1.25495 0.97938 0.99288 0.94213 1.69970 1.21509 1.14716 1.48633 0.85701 0.79786 0.78733 0.78440 1.20087 1.19895 1.20007 1.18407 0.97243 0.92694 0.87380 1.21116 1.04088 1.00174 0.93216 1.21216 0.97819 0.95561 0.97632 1.21414 1.02337 0.94109 0.98977 1.21407 0.97874 1.00752 0.92314 1.22743 1.02546 0.93449 1.02829 1.65271 1.06118 1.48607 1.00486 1.24079 1.01420 0.97622 0.89712 1.22680 0.92418 0.90668 0.89077 0.87835 1.86678 1.38610 1.53401 1.58243 1.22703 0.87179 0.95116 0.90092 0.88730 1.86641 1.20482 1.62206 1.67375 1.23896 0.89918 1.00181 0.98810 0.92194 0.89368 0.90301 0.93169 0.95578 0.91979 0.86772 0.83901 0.83078 0.83628 0.81621 0.86538 0.93624 0.75829 0.76289 0.95162 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.50 71.98 0.61 -3.43 16 2 C 0.06 2.29 1.39 44.17 0.06 2.35 16 3 H 0.06 2.54 6.73 -2.38 -0.02 2.52 16 4 C 0.52 21.60 6.25 87.66 0.55 22.15 16 5 O -0.54 -22.78 12.02 -3.04 -0.04 -22.82 16 6 N -0.54 -24.08 2.69 -635.33 -1.71 -25.79 16 7 C 0.24 11.62 4.06 85.63 0.35 11.97 16 8 C -0.55 -28.54 8.53 25.60 0.22 -28.32 16 9 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 10 C 0.03 1.69 5.46 84.66 0.46 2.15 16 11 N -0.91 -48.89 13.29 21.45 0.28 -48.60 16 12 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 16 C 0.14 5.91 6.48 38.15 0.25 6.15 16 17 C -0.17 -6.74 9.05 22.39 0.20 -6.53 16 18 C -0.10 -3.37 10.04 22.25 0.22 -3.15 16 19 C -0.15 -4.25 10.04 22.29 0.22 -4.03 16 20 C -0.11 -3.26 10.04 22.25 0.22 -3.03 16 21 C -0.20 -7.59 9.04 22.39 0.20 -7.39 16 22 N -0.48 -15.00 4.87 -860.70 -4.19 -19.19 16 23 C 0.00 -0.01 5.11 86.45 0.44 0.43 16 24 C 0.11 2.55 4.42 31.49 0.14 2.69 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 26 O -0.56 -13.74 12.45 -128.55 -1.60 -15.34 16 27 C 0.11 2.84 4.42 31.49 0.14 2.98 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 29 O -0.56 -15.70 12.44 -128.55 -1.60 -17.30 16 30 C 0.00 0.02 5.47 86.45 0.47 0.50 16 31 H 0.06 1.99 6.50 -2.38 -0.02 1.97 16 32 H 0.09 2.25 7.31 -2.39 -0.02 2.23 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.41 4.76 -2.39 -0.01 2.40 16 35 H 0.03 1.34 6.79 -2.39 -0.02 1.33 16 36 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 37 H 0.11 5.14 6.16 -2.91 -0.02 5.12 16 38 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 41 H 0.17 6.80 4.54 -61.33 -0.28 6.52 16 42 H 0.12 2.22 7.82 -2.39 -0.02 2.20 16 43 H 0.05 1.30 7.91 -2.39 -0.02 1.28 16 44 H 0.39 5.60 9.11 -74.06 -0.67 4.92 16 45 H 0.39 7.75 9.12 -74.06 -0.68 7.08 16 46 H 0.03 1.14 7.84 -2.39 -0.02 1.12 16 47 H 0.08 2.73 7.35 -2.39 -0.02 2.71 16 Total: -1.00 -67.62 373.57 -2.65 -70.27 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.60 Total: 39.05 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.76 Total: -4.51 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -5.61 Total: -93.58 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -3.24 Total: -55.46 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -67.62 -2.65 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.144 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds