Wall clock time and date at job start Tue Mar 31 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.50703 * 109.47120 * 240.00085 * 2 1 3 5 5 O 1.21286 * 119.99839 * 275.39092 * 4 2 1 6 6 N 1.34779 * 119.99806 * 95.38519 * 4 2 1 7 7 C 1.46496 * 120.00224 * 6.71113 * 6 4 2 8 8 C 1.50699 * 109.47171 * 275.63283 * 7 6 4 9 9 H 1.08003 * 120.00043 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00344 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99614 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00010 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47707 * 59.99557 * 12 10 8 14 14 H 1.48505 * 109.47186 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47096 * 299.99400 * 12 10 8 16 16 C 1.39923 * 119.99854 * 186.70594 * 6 4 2 17 17 C 1.38875 * 120.07145 * 180.98056 * 16 6 4 18 18 C 1.38112 * 119.92951 * 179.97438 * 17 16 6 19 19 C 1.38278 * 120.07127 * 0.02562 * 18 17 16 20 20 C 1.38282 * 120.14360 * 359.95666 * 19 18 17 21 21 C 1.38117 * 120.06831 * 0.04674 * 20 19 18 22 22 N 1.46900 * 109.47109 * 120.00383 * 2 1 3 23 23 C 1.47846 * 111.00089 * 174.15536 * 22 2 1 24 24 C 1.54902 * 104.79346 * 146.36298 * 23 22 2 25 25 H 1.08999 * 110.99277 * 81.02348 * 24 23 22 26 26 O 1.42899 * 110.99059 * 204.83584 * 24 23 22 27 27 C 1.55134 * 101.65691 * 322.93117 * 24 23 22 28 28 H 1.09001 * 110.85489 * 277.20466 * 27 24 23 29 29 O 1.42899 * 110.70892 * 154.03721 * 27 24 23 30 30 C 1.47440 * 111.00046 * 294.99984 * 22 2 1 31 31 H 1.08998 * 109.47118 * 297.26410 * 1 2 3 32 32 H 1.09003 * 109.47170 * 57.25995 * 1 2 3 33 33 H 1.08996 * 109.47381 * 177.25873 * 1 2 3 34 34 H 1.09007 * 109.47054 * 35.62910 * 7 6 4 35 35 H 1.08992 * 109.47667 * 155.62773 * 7 6 4 36 36 H 0.97006 * 119.99513 * 180.02562 * 11 10 8 37 37 H 1.08003 * 120.03001 * 359.70271 * 17 16 6 38 38 H 1.08004 * 119.96163 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.92937 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.96982 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.03439 * 179.97438 * 21 20 19 42 42 H 1.09002 * 110.37335 * 265.19439 * 23 22 2 43 43 H 1.08993 * 110.37101 * 27.53288 * 23 22 2 44 44 H 0.96700 * 114.00103 * 292.27436 * 26 24 23 45 45 H 0.96705 * 113.99753 * 184.94519 * 29 27 24 46 46 H 1.09000 * 109.88691 * 356.14926 * 30 22 2 47 47 H 1.08995 * 109.89248 * 117.16912 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1415 -1.9183 -1.2313 6 7 2.3603 -0.0034 -2.3301 7 6 2.3697 1.4608 -2.2837 8 6 0.9757 1.9800 -2.5254 9 1 0.1640 1.2885 -2.6969 10 6 0.7367 3.3379 -2.5287 11 7 1.7251 4.1800 -2.3205 12 14 -0.9910 3.9814 -2.8290 13 1 -1.9032 3.4591 -1.7800 14 1 -0.9816 5.4657 -2.7819 15 1 -1.4619 3.5311 -4.1634 16 6 2.6918 -0.6679 -3.5160 17 6 3.0497 0.0586 -4.6441 18 6 3.3769 -0.6003 -5.8130 19 6 3.3480 -1.9820 -5.8609 20 6 2.9925 -2.7084 -4.7392 21 6 2.6641 -2.0554 -3.5673 22 7 2.0197 -0.6926 1.1994 23 6 3.4908 -0.8352 1.1654 24 6 3.9330 -0.7281 2.6461 25 1 3.7987 -1.6781 3.1634 26 8 5.2864 -0.2806 2.7451 27 6 2.9520 0.3439 3.1893 28 1 3.3093 1.3481 2.9611 29 8 2.7592 0.1857 4.5964 30 6 1.6474 0.0417 2.4225 31 1 -0.3633 0.4708 0.9135 32 1 -0.3634 0.5558 -0.8644 33 1 -0.3634 -1.0264 -0.0491 34 1 2.7156 1.7911 -1.3042 35 1 3.0389 1.8445 -3.0537 36 1 1.5569 5.1354 -2.3224 37 1 3.0678 1.1379 -4.6087 38 1 3.6549 -0.0358 -6.6908 39 1 3.6039 -2.4949 -6.7762 40 1 2.9712 -3.7874 -4.7796 41 1 2.3861 -2.6233 -2.6917 42 1 3.7686 -1.8064 0.7556 43 1 3.9363 -0.0329 0.5773 44 1 5.9363 -0.9174 2.4175 45 1 2.0975 0.7824 4.9723 46 1 1.1483 0.9739 2.1580 47 1 0.9870 -0.5709 3.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278930654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:41 Heat of formation + Delta-G solvation = -69.770784 kcal Electronic energy + Delta-G solvation = -30399.669821 eV Core-core repulsion = 26355.616510 eV Total energy + Delta-G solvation = -4044.053311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63307 -39.40350 -37.84169 -36.13758 -35.93504 -35.34768 -32.82073 -32.05242 -30.35701 -29.43868 -28.42046 -27.58040 -27.35262 -24.16899 -23.56853 -22.33479 -21.67452 -21.07775 -20.52694 -18.84876 -17.95785 -17.11305 -16.94855 -16.78973 -16.59556 -15.92690 -15.58079 -15.04436 -14.87189 -14.38206 -14.12183 -13.93624 -13.79961 -13.62763 -13.45647 -13.12168 -12.82494 -12.70600 -12.59392 -12.42180 -12.22787 -12.11077 -11.75236 -11.71992 -11.47841 -11.35521 -11.16014 -11.10772 -10.76257 -10.59542 -10.46659 -10.35356 -10.29544 -10.14713 -10.05407 -9.27510 -8.78212 -8.64350 -8.38994 -8.13685 -7.24977 -6.35239 -4.44434 1.81404 1.96480 3.10573 3.13749 3.19695 3.22513 3.39425 3.78385 3.92380 4.18013 4.39532 4.43501 4.47885 4.90659 4.94314 4.98659 5.00198 5.23230 5.37998 5.42042 5.46364 5.47139 5.58130 5.62776 5.68405 5.84894 5.91047 5.96785 6.00264 6.07892 6.10899 6.14242 6.23829 6.45691 6.61129 6.69456 6.79314 6.88975 6.93041 7.03240 7.05391 7.11745 7.22654 7.47978 7.53514 7.57117 7.77729 7.80568 8.02016 8.58982 8.72839 9.23505 10.70912 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.005154 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.122964 B = 5431.210873 C = 7646.577328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 H 0.084 0.916 4 C 0.525 3.475 5 O -0.525 6.525 6 N -0.535 5.535 7 C 0.227 3.773 8 C -0.541 4.541 9 H 0.065 0.935 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.172 3.828 17 C -0.150 4.150 18 C -0.103 4.103 19 C -0.163 4.163 20 C -0.107 4.107 21 C -0.182 4.182 22 N -0.500 5.500 23 C 0.012 3.988 24 C 0.104 3.896 25 H 0.082 0.918 26 O -0.558 6.558 27 C 0.090 3.910 28 H 0.075 0.925 29 O -0.557 6.557 30 C 0.013 3.987 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.268 0.732 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.179 0.821 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.382 0.618 45 H 0.380 0.620 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -6.906 5.095 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 H 0.101 0.899 4 C 0.315 3.685 5 O -0.404 6.404 6 N -0.254 5.254 7 C 0.108 3.892 8 C -0.579 4.579 9 H 0.083 0.917 10 C -0.134 4.134 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.076 3.924 17 C -0.171 4.171 18 C -0.122 4.122 19 C -0.182 4.182 20 C -0.126 4.126 21 C -0.201 4.201 22 N -0.228 5.228 23 C -0.116 4.116 24 C 0.044 3.956 25 H 0.100 0.900 26 O -0.363 6.363 27 C 0.030 3.970 28 H 0.093 0.907 29 O -0.362 6.362 30 C -0.115 4.115 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.153 0.847 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.195 0.805 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.229 0.771 45 H 0.228 0.772 46 H 0.089 0.911 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.306 -7.661 5.381 9.642 hybrid contribution -0.770 1.508 -0.690 1.829 sum 1.536 -6.153 4.690 7.888 Atomic orbital electron populations 1.21781 0.91337 1.02689 1.03576 1.21892 0.98186 0.96854 0.87504 0.89881 1.20429 0.76615 0.86957 0.84486 1.90247 1.53402 1.14451 1.82301 1.46038 1.61127 1.10233 1.08043 1.19735 0.98924 0.71441 0.99081 1.21320 0.93550 0.91926 1.51088 0.91688 1.24904 0.97535 0.96544 0.94436 1.69903 1.31427 1.03133 1.48010 0.86570 0.84003 0.77837 0.79287 1.19855 1.21010 1.19910 1.18086 0.96318 0.91638 0.86390 1.21085 1.03014 1.00822 0.92146 1.20847 0.99921 0.94277 0.97141 1.20976 1.04623 0.94238 0.98360 1.21032 0.99403 0.99188 0.92941 1.22747 1.02503 0.93539 1.01320 1.63418 1.10626 1.47866 1.00841 1.23723 0.88343 1.03156 0.96386 1.22827 0.81784 0.96904 0.94067 0.90001 1.86493 1.15528 1.47428 1.86804 1.22981 0.94077 0.98749 0.81243 0.90698 1.86507 1.64078 1.64507 1.21084 1.23605 0.97217 0.98640 0.92072 0.92056 0.89519 0.92057 0.94181 0.93193 0.92194 0.84711 0.86516 0.87150 0.86779 0.80524 0.88821 0.92480 0.77059 0.77240 0.91089 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.16 37.16 0.34 -1.94 16 2 C 0.07 1.18 1.37 -68.86 -0.09 1.08 16 3 H 0.08 1.60 5.71 -51.93 -0.30 1.30 16 4 C 0.53 10.45 5.61 -10.98 -0.06 10.39 16 5 O -0.53 -10.89 12.50 5.55 0.07 -10.83 16 6 N -0.54 -11.16 2.70 -114.74 -0.31 -11.47 16 7 C 0.23 5.10 4.44 -5.20 -0.02 5.08 16 8 C -0.54 -12.99 8.05 -34.44 -0.28 -13.27 16 9 H 0.06 1.60 6.89 -52.48 -0.36 1.24 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -22.94 13.29 55.43 0.74 -22.20 16 12 Si 0.90 19.43 29.54 -169.99 -5.02 14.41 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.17 3.49 6.51 -83.69 -0.55 2.95 16 17 C -0.15 -2.88 9.23 -39.39 -0.36 -3.25 16 18 C -0.10 -1.70 10.04 -39.61 -0.40 -2.09 16 19 C -0.16 -2.51 10.04 -39.55 -0.40 -2.91 16 20 C -0.11 -1.75 10.04 -39.61 -0.40 -2.15 16 21 C -0.18 -3.47 9.04 -39.39 -0.36 -3.82 16 22 N -0.50 -7.84 4.81 -224.69 -1.08 -8.92 16 23 C 0.01 0.18 5.26 -2.30 -0.01 0.17 16 24 C 0.10 1.40 4.15 -24.60 -0.10 1.29 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 26 O -0.56 -7.33 13.47 -35.23 -0.47 -7.80 16 27 C 0.09 1.17 4.06 -24.91 -0.10 1.07 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 O -0.56 -6.70 13.39 -35.23 -0.47 -7.17 16 30 C 0.01 0.17 5.89 -2.84 -0.02 0.15 16 31 H 0.06 0.89 6.75 -51.93 -0.35 0.54 16 32 H 0.09 1.62 6.08 -51.93 -0.32 1.30 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.93 6.26 -51.93 -0.32 0.61 16 35 H 0.05 1.18 5.88 -51.93 -0.31 0.88 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.14 2.70 6.01 -52.48 -0.32 2.39 16 38 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.18 3.56 4.53 -56.18 -0.25 3.31 16 42 H 0.09 1.45 7.76 -51.93 -0.40 1.04 16 43 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 44 H 0.38 3.30 9.12 45.56 0.42 3.71 16 45 H 0.38 2.81 9.11 45.56 0.42 3.23 16 46 H 0.07 0.90 6.68 -51.93 -0.35 0.56 16 47 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -29.22 372.81 -8.77 -37.99 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -4.93 Total: 16.00 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.90 Total: -5.63 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.65 Total: -42.59 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.88 Total: -25.80 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.22 -8.77 -37.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.781 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds