Wall clock time and date at job start Tue Mar 31 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.50703 * 109.47120 * 240.00085 * 2 1 3 5 5 O 1.21286 * 119.99839 * 275.39092 * 4 2 1 6 6 N 1.34779 * 119.99806 * 95.38519 * 4 2 1 7 7 C 1.46496 * 120.00224 * 6.71113 * 6 4 2 8 8 C 1.50699 * 109.47171 * 275.63283 * 7 6 4 9 9 H 1.08003 * 120.00043 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00344 * 180.02562 * 8 7 6 11 11 N 1.31510 * 119.99614 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00010 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47707 * 59.99557 * 12 10 8 14 14 H 1.48505 * 109.47186 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47096 * 299.99400 * 12 10 8 16 16 C 1.39923 * 119.99854 * 186.70594 * 6 4 2 17 17 C 1.38875 * 120.07145 * 180.98056 * 16 6 4 18 18 C 1.38112 * 119.92951 * 179.97438 * 17 16 6 19 19 C 1.38278 * 120.07127 * 0.02562 * 18 17 16 20 20 C 1.38282 * 120.14360 * 359.95666 * 19 18 17 21 21 C 1.38117 * 120.06831 * 0.04674 * 20 19 18 22 22 N 1.46900 * 109.47109 * 120.00383 * 2 1 3 23 23 C 1.47846 * 111.00089 * 174.15536 * 22 2 1 24 24 C 1.54902 * 104.79346 * 146.36298 * 23 22 2 25 25 H 1.08999 * 110.99277 * 81.02348 * 24 23 22 26 26 O 1.42899 * 110.99059 * 204.83584 * 24 23 22 27 27 C 1.55134 * 101.65691 * 322.93117 * 24 23 22 28 28 H 1.09001 * 110.85489 * 277.20466 * 27 24 23 29 29 O 1.42899 * 110.70892 * 154.03721 * 27 24 23 30 30 C 1.47440 * 111.00046 * 294.99984 * 22 2 1 31 31 H 1.08998 * 109.47118 * 297.26410 * 1 2 3 32 32 H 1.09003 * 109.47170 * 57.25995 * 1 2 3 33 33 H 1.08996 * 109.47381 * 177.25873 * 1 2 3 34 34 H 1.09007 * 109.47054 * 35.62910 * 7 6 4 35 35 H 1.08992 * 109.47667 * 155.62773 * 7 6 4 36 36 H 0.97006 * 119.99513 * 180.02562 * 11 10 8 37 37 H 1.08003 * 120.03001 * 359.70271 * 17 16 6 38 38 H 1.08004 * 119.96163 * 179.97438 * 18 17 16 39 39 H 1.08002 * 119.92937 * 179.97438 * 19 18 17 40 40 H 1.07995 * 119.96982 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.03439 * 179.97438 * 21 20 19 42 42 H 1.09002 * 110.37335 * 265.19439 * 23 22 2 43 43 H 1.08993 * 110.37101 * 27.53288 * 23 22 2 44 44 H 0.96700 * 114.00103 * 292.27436 * 26 24 23 45 45 H 0.96705 * 113.99753 * 184.94519 * 29 27 24 46 46 H 1.09000 * 109.88691 * 356.14926 * 30 22 2 47 47 H 1.08995 * 109.89248 * 117.16912 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1415 -1.9183 -1.2313 6 7 2.3603 -0.0034 -2.3301 7 6 2.3697 1.4608 -2.2837 8 6 0.9757 1.9800 -2.5254 9 1 0.1640 1.2885 -2.6969 10 6 0.7367 3.3379 -2.5287 11 7 1.7251 4.1800 -2.3205 12 14 -0.9910 3.9814 -2.8290 13 1 -1.9032 3.4591 -1.7800 14 1 -0.9816 5.4657 -2.7819 15 1 -1.4619 3.5311 -4.1634 16 6 2.6918 -0.6679 -3.5160 17 6 3.0497 0.0586 -4.6441 18 6 3.3769 -0.6003 -5.8130 19 6 3.3480 -1.9820 -5.8609 20 6 2.9925 -2.7084 -4.7392 21 6 2.6641 -2.0554 -3.5673 22 7 2.0197 -0.6926 1.1994 23 6 3.4908 -0.8352 1.1654 24 6 3.9330 -0.7281 2.6461 25 1 3.7987 -1.6781 3.1634 26 8 5.2864 -0.2806 2.7451 27 6 2.9520 0.3439 3.1893 28 1 3.3093 1.3481 2.9611 29 8 2.7592 0.1857 4.5964 30 6 1.6474 0.0417 2.4225 31 1 -0.3633 0.4708 0.9135 32 1 -0.3634 0.5558 -0.8644 33 1 -0.3634 -1.0264 -0.0491 34 1 2.7156 1.7911 -1.3042 35 1 3.0389 1.8445 -3.0537 36 1 1.5569 5.1354 -2.3224 37 1 3.0678 1.1379 -4.6087 38 1 3.6549 -0.0358 -6.6908 39 1 3.6039 -2.4949 -6.7762 40 1 2.9712 -3.7874 -4.7796 41 1 2.3861 -2.6233 -2.6917 42 1 3.7686 -1.8064 0.7556 43 1 3.9363 -0.0329 0.5773 44 1 5.9363 -0.9174 2.4175 45 1 2.0975 0.7824 4.9723 46 1 1.1483 0.9739 2.1580 47 1 0.9870 -0.5709 3.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278930654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:41 Heat of formation + Delta-G solvation = -92.781045 kcal Electronic energy + Delta-G solvation = -30400.667621 eV Core-core repulsion = 26355.616510 eV Total energy + Delta-G solvation = -4045.051111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.10326 -40.61855 -39.20447 -37.18425 -37.06796 -36.98609 -34.65799 -33.35787 -31.75370 -30.89216 -29.58548 -29.11392 -28.76768 -25.57361 -25.33204 -23.67304 -23.03098 -22.31184 -21.73326 -20.30144 -19.05107 -18.70441 -18.57926 -18.16211 -17.95930 -17.18934 -16.80940 -16.57880 -16.37626 -15.89646 -15.37208 -15.31681 -15.09939 -14.83442 -14.69799 -14.55938 -14.37023 -14.17698 -13.86318 -13.74727 -13.52415 -13.43270 -13.28923 -13.12535 -12.94152 -12.85726 -12.71145 -12.59917 -12.29194 -12.17419 -11.98613 -11.81179 -11.52258 -11.30692 -11.17405 -10.92669 -10.67084 -10.16240 -9.77827 -9.43715 -8.78935 -8.24479 -6.40939 0.39915 0.57282 1.40297 1.42392 1.48798 1.61598 1.91187 2.36944 2.62839 2.91846 3.03487 3.05305 3.26763 3.27738 3.53202 3.88313 3.90023 4.05778 4.08534 4.11276 4.17941 4.22081 4.38004 4.40163 4.41600 4.57759 4.63367 4.67426 4.69820 4.73944 4.78579 4.84120 4.89615 4.95519 5.06497 5.21609 5.26416 5.40653 5.59534 5.64210 5.66464 5.72636 5.76306 5.81058 5.91308 6.31734 6.39180 6.69438 6.70155 6.76397 7.13108 7.30416 8.79583 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008495 B = 0.005154 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3295.122964 B = 5431.210873 C = 7646.577328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.074 3.926 3 H 0.063 0.937 4 C 0.521 3.479 5 O -0.537 6.537 6 N -0.541 5.541 7 C 0.245 3.755 8 C -0.538 4.538 9 H 0.057 0.943 10 C 0.031 3.969 11 N -0.916 5.916 12 Si 0.951 3.049 13 H -0.263 1.263 14 H -0.282 1.282 15 H -0.276 1.276 16 C 0.140 3.860 17 C -0.171 4.171 18 C -0.100 4.100 19 C -0.151 4.151 20 C -0.103 4.103 21 C -0.198 4.198 22 N -0.504 5.504 23 C 0.017 3.983 24 C 0.110 3.890 25 H 0.091 0.909 26 O -0.571 6.571 27 C 0.095 3.905 28 H 0.065 0.935 29 O -0.563 6.563 30 C 0.016 3.984 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.269 0.731 37 H 0.115 0.885 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.166 0.834 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.400 0.600 45 H 0.400 0.600 46 H 0.074 0.926 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.690 -8.050 4.835 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.037 4.037 3 H 0.081 0.919 4 C 0.311 3.689 5 O -0.416 6.416 6 N -0.261 5.261 7 C 0.125 3.875 8 C -0.577 4.577 9 H 0.075 0.925 10 C -0.171 4.171 11 N -0.555 5.555 12 Si 0.776 3.224 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.202 1.202 16 C 0.044 3.956 17 C -0.191 4.191 18 C -0.118 4.118 19 C -0.169 4.169 20 C -0.121 4.121 21 C -0.217 4.217 22 N -0.231 5.231 23 C -0.111 4.111 24 C 0.051 3.949 25 H 0.109 0.891 26 O -0.378 6.378 27 C 0.035 3.965 28 H 0.083 0.917 29 O -0.371 6.371 30 C -0.112 4.112 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.182 0.818 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.250 0.750 45 H 0.251 0.749 46 H 0.093 0.907 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.714 -8.821 5.127 10.346 hybrid contribution -0.506 1.779 -0.666 1.965 sum 1.209 -7.043 4.461 8.424 Atomic orbital electron populations 1.21718 0.90492 1.02653 1.03860 1.21772 0.98722 0.95549 0.87666 0.91912 1.20804 0.76266 0.86993 0.84796 1.90240 1.54021 1.14781 1.82604 1.45990 1.61729 1.09462 1.08924 1.19349 0.97882 0.72696 0.97587 1.21396 0.93815 0.91948 1.50498 0.92511 1.25548 1.00599 0.96693 0.94240 1.69997 1.33079 1.03313 1.49093 0.85710 0.80344 0.77272 0.79116 1.18748 1.20736 1.20159 1.18413 0.98076 0.92502 0.86561 1.21103 1.04688 1.00043 0.93310 1.21218 0.98525 0.95272 0.96831 1.21418 1.02389 0.93716 0.99419 1.21409 0.97831 1.00850 0.92059 1.22713 1.03782 0.92903 1.02325 1.63443 1.10887 1.47933 1.00876 1.23637 0.88085 1.01832 0.97564 1.22755 0.82105 0.97485 0.92604 0.89120 1.86458 1.15817 1.48665 1.86882 1.22812 0.93767 0.97996 0.81964 0.91739 1.86467 1.65123 1.65384 1.20150 1.23679 0.97611 0.98915 0.90996 0.89515 0.91677 0.91889 0.95447 0.94910 0.92155 0.86670 0.83700 0.83057 0.83702 0.81805 0.89564 0.94638 0.74989 0.74878 0.90721 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.16 71.98 0.66 -3.70 16 2 C 0.07 2.70 1.37 44.17 0.06 2.76 16 3 H 0.06 2.55 5.71 -2.39 -0.01 2.53 16 4 C 0.52 21.56 5.61 87.66 0.49 22.05 16 5 O -0.54 -22.94 12.50 -3.05 -0.04 -22.98 16 6 N -0.54 -23.73 2.70 -635.31 -1.71 -25.44 16 7 C 0.24 11.62 4.44 85.63 0.38 12.00 16 8 C -0.54 -26.75 8.05 25.60 0.21 -26.54 16 9 H 0.06 2.88 6.89 -2.91 -0.02 2.86 16 10 C 0.03 1.53 5.46 84.66 0.46 1.99 16 11 N -0.92 -48.48 13.29 21.45 0.28 -48.20 16 12 Si 0.95 39.95 29.54 68.60 2.03 41.98 16 13 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 14 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 16 C 0.14 5.86 6.51 38.15 0.25 6.11 16 17 C -0.17 -6.70 9.23 22.39 0.21 -6.49 16 18 C -0.10 -3.12 10.04 22.25 0.22 -2.89 16 19 C -0.15 -4.16 10.04 22.29 0.22 -3.94 16 20 C -0.10 -3.15 10.04 22.25 0.22 -2.93 16 21 C -0.20 -7.57 9.04 22.39 0.20 -7.37 16 22 N -0.50 -15.82 4.81 -864.78 -4.16 -19.98 16 23 C 0.02 0.53 5.26 86.77 0.46 0.98 16 24 C 0.11 2.90 4.15 31.98 0.13 3.03 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 26 O -0.57 -14.71 13.47 -148.98 -2.01 -16.72 16 27 C 0.09 2.39 4.06 31.77 0.13 2.52 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 O -0.56 -12.46 13.39 -148.98 -2.00 -14.45 16 30 C 0.02 0.39 5.89 86.65 0.51 0.90 16 31 H 0.09 2.42 6.75 -2.39 -0.02 2.40 16 32 H 0.06 2.47 6.08 -2.39 -0.01 2.46 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.03 1.37 6.26 -2.38 -0.01 1.35 16 35 H 0.03 1.66 5.88 -2.39 -0.01 1.65 16 36 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 37 H 0.12 4.89 6.01 -2.91 -0.02 4.87 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.17 6.73 4.53 -61.31 -0.28 6.45 16 42 H 0.09 2.74 7.76 -2.39 -0.02 2.72 16 43 H 0.04 1.24 7.69 -2.39 -0.02 1.22 16 44 H 0.40 6.68 9.12 -74.06 -0.68 6.01 16 45 H 0.40 5.02 9.11 -74.05 -0.67 4.35 16 46 H 0.07 1.82 6.68 -2.39 -0.02 1.81 16 47 H 0.11 2.37 8.06 -2.39 -0.02 2.35 16 Total: -1.00 -63.79 372.81 -3.38 -67.16 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.59 Total: 40.14 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.82 Total: -1.51 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -5.59 Total: -93.62 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -4.04 Total: -54.15 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -63.79 -3.38 -67.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds