Wall clock time and date at job start Tue Mar 31 2020 18:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46986 * 2 1 4 4 C 1.50700 * 109.47091 * 240.00125 * 2 1 3 5 5 O 1.21288 * 119.99653 * 246.79797 * 4 2 1 6 6 N 1.34773 * 120.00106 * 66.79839 * 4 2 1 7 7 C 1.46496 * 119.99954 * 5.85763 * 6 4 2 8 8 C 1.50700 * 109.47350 * 86.60993 * 7 6 4 9 9 H 1.07994 * 120.00118 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99793 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99773 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00000 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46864 * 90.00718 * 12 10 8 14 14 H 1.48503 * 109.47117 * 210.00142 * 12 10 8 15 15 H 1.48496 * 109.47652 * 330.00395 * 12 10 8 16 16 C 1.39924 * 119.99665 * 186.13084 * 6 4 2 17 17 C 1.38871 * 120.07291 * 7.40175 * 16 6 4 18 18 C 1.38119 * 119.92656 * 179.67585 * 17 16 6 19 19 C 1.38283 * 120.06806 * 0.61994 * 18 17 16 20 20 C 1.38277 * 120.14478 * 359.67991 * 19 18 17 21 21 C 1.38112 * 120.07255 * 359.97438 * 20 19 18 22 22 N 1.46897 * 109.47346 * 119.99824 * 2 1 3 23 23 C 1.47441 * 111.00231 * 174.15931 * 22 2 1 24 24 C 1.54322 * 107.23579 * 123.25635 * 23 22 2 25 25 H 1.08999 * 110.70299 * 263.90040 * 24 23 22 26 26 O 1.42895 * 110.70626 * 140.66515 * 24 23 22 27 27 C 1.55139 * 103.01517 * 22.28354 * 24 23 22 28 28 H 1.09005 * 110.98951 * 82.44088 * 27 24 23 29 29 O 1.42906 * 110.98654 * 206.25136 * 27 24 23 30 30 C 1.47849 * 111.00188 * 295.00283 * 22 2 1 31 31 H 1.09006 * 109.47420 * 306.12093 * 1 2 3 32 32 H 1.08998 * 109.47562 * 66.12279 * 1 2 3 33 33 H 1.08997 * 109.47184 * 186.12352 * 1 2 3 34 34 H 1.09008 * 109.46727 * 206.60894 * 7 6 4 35 35 H 1.08995 * 109.47456 * 326.60437 * 7 6 4 36 36 H 0.96997 * 119.99926 * 179.97438 * 11 10 8 37 37 H 1.07991 * 120.03556 * 359.97438 * 17 16 6 38 38 H 1.08000 * 119.96417 * 180.29882 * 18 17 16 39 39 H 1.08004 * 119.92658 * 179.69306 * 19 18 17 40 40 H 1.07996 * 119.96597 * 180.02562 * 20 19 18 41 41 H 1.07995 * 120.04134 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.88626 * 242.66468 * 23 22 2 43 43 H 1.09005 * 109.88680 * 3.85241 * 23 22 2 44 44 H 0.96703 * 114.00000 * 66.40113 * 26 24 23 45 45 H 0.96705 * 113.99509 * 173.72195 * 29 27 24 46 46 H 1.09006 * 110.37143 * 332.46051 * 30 22 2 47 47 H 1.09000 * 110.37506 * 94.80108 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6246 -1.7634 -1.1234 6 7 1.8234 -0.1756 -2.4498 7 6 1.2233 1.1551 -2.5730 8 6 2.3040 2.2026 -2.4960 9 1 3.3347 1.9067 -2.3676 10 6 1.9767 3.5388 -2.5883 11 7 2.9198 4.4530 -2.5206 12 14 0.1939 4.0506 -2.8095 13 1 -0.4344 4.2443 -1.4779 14 1 0.1352 5.3224 -3.5741 15 1 -0.5365 2.9924 -3.5523 16 6 2.1744 -0.8939 -3.5982 17 6 2.5936 -2.2136 -3.4925 18 6 2.9330 -2.9219 -4.6287 19 6 2.8679 -2.3143 -5.8691 20 6 2.4568 -0.9984 -5.9771 21 6 2.1093 -0.2869 -4.8456 22 7 2.0197 -0.6924 1.1994 23 6 3.4868 -0.8346 1.1655 24 6 4.0399 -0.1741 2.4459 25 1 4.3533 0.8506 2.2463 26 8 5.1209 -0.9392 2.9825 27 6 2.8214 -0.1980 3.4057 28 1 2.7286 -1.1678 3.8949 29 8 2.9087 0.8531 4.3700 30 6 1.6463 0.0439 2.4259 31 1 -0.3634 0.6058 0.8302 32 1 -0.3634 0.4160 -0.9397 33 1 -0.3633 -1.0218 0.1096 34 1 0.7083 1.2342 -3.5304 35 1 0.5102 1.3086 -1.7631 36 1 2.6896 5.3930 -2.5859 37 1 2.6496 -2.6870 -2.5235 38 1 3.2544 -3.9498 -4.5476 39 1 3.1385 -2.8688 -6.7556 40 1 2.4067 -0.5269 -6.9474 41 1 1.7879 0.7407 -4.9306 42 1 3.7567 -1.8905 1.1467 43 1 3.8879 -0.3313 0.2857 44 1 5.9077 -0.9564 2.4205 45 1 2.1252 0.9388 4.9303 46 1 1.5428 1.1079 2.2130 47 1 0.7193 -0.3531 2.8396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278930661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:44 Heat of formation + Delta-G solvation = -62.200765 kcal Electronic energy + Delta-G solvation = -30420.117550 eV Core-core repulsion = 26376.392499 eV Total energy + Delta-G solvation = -4043.725051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75140 -39.40291 -37.89464 -36.08663 -35.91855 -35.52007 -32.74888 -32.26691 -30.43449 -29.55071 -28.41288 -27.95058 -27.58663 -24.27461 -23.10763 -22.41750 -21.63182 -21.00655 -20.70888 -18.93151 -17.94173 -17.30424 -17.09020 -16.80358 -16.54187 -15.80485 -15.74666 -15.25296 -14.78615 -14.54398 -14.49181 -13.87064 -13.61482 -13.58727 -13.39617 -13.01578 -12.98949 -12.90313 -12.65630 -12.52611 -12.40483 -12.26515 -12.11823 -11.89688 -11.47887 -11.42042 -11.26430 -11.11662 -10.72817 -10.66803 -10.47690 -10.41281 -10.19654 -10.11888 -9.88619 -9.32882 -8.90652 -8.77854 -8.43329 -8.21767 -7.28112 -6.37667 -4.41633 1.76381 1.91530 3.03563 3.06600 3.11677 3.13833 3.29526 3.78360 3.94123 4.10575 4.37421 4.39208 4.45573 4.79948 4.91919 4.96815 5.03898 5.27052 5.30971 5.38127 5.39869 5.45361 5.51517 5.59081 5.62329 5.73299 5.78037 5.91760 5.93376 5.94513 5.99750 6.06938 6.17908 6.23471 6.31811 6.49132 6.57310 6.78699 6.89579 6.92998 6.98831 7.04496 7.12080 7.20928 7.50917 7.59993 7.67421 7.84789 8.18811 8.57566 8.67924 9.18735 10.74441 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.005086 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.783530 B = 5503.699213 C = 7506.966470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 H 0.092 0.908 4 C 0.528 3.472 5 O -0.523 6.523 6 N -0.530 5.530 7 C 0.188 3.812 8 C -0.547 4.547 9 H 0.078 0.922 10 C 0.081 3.919 11 N -0.883 5.883 12 Si 0.865 3.135 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.170 3.830 17 C -0.172 4.172 18 C -0.107 4.107 19 C -0.160 4.160 20 C -0.103 4.103 21 C -0.147 4.147 22 N -0.499 5.499 23 C 0.027 3.973 24 C 0.086 3.914 25 H 0.074 0.926 26 O -0.557 6.557 27 C 0.103 3.897 28 H 0.082 0.918 29 O -0.557 6.557 30 C 0.012 3.988 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.269 0.731 37 H 0.172 0.828 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.382 0.618 45 H 0.380 0.620 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -8.798 4.860 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 H 0.109 0.891 4 C 0.317 3.683 5 O -0.401 6.401 6 N -0.249 5.249 7 C 0.068 3.932 8 C -0.585 4.585 9 H 0.097 0.903 10 C -0.123 4.123 11 N -0.519 5.519 12 Si 0.691 3.309 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.187 1.187 16 C 0.074 3.926 17 C -0.192 4.192 18 C -0.126 4.126 19 C -0.179 4.179 20 C -0.122 4.122 21 C -0.167 4.167 22 N -0.226 5.226 23 C -0.101 4.101 24 C 0.026 3.974 25 H 0.092 0.908 26 O -0.362 6.362 27 C 0.043 3.957 28 H 0.100 0.900 29 O -0.362 6.362 30 C -0.116 4.116 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.189 0.811 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.152 0.848 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.229 0.771 45 H 0.227 0.773 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.068 -9.558 5.207 11.620 hybrid contribution -0.621 1.589 -0.671 1.833 sum -4.690 -7.969 4.536 10.300 Atomic orbital electron populations 1.21976 0.92179 1.03083 1.03322 1.21850 0.97375 0.97724 0.88340 0.89062 1.20343 0.78769 0.84858 0.84293 1.90352 1.41045 1.23073 1.85626 1.45608 1.57403 1.18272 1.03601 1.20349 0.95337 0.78598 0.98913 1.21223 0.94733 0.89659 1.52862 0.90345 1.24835 0.97239 0.96235 0.94034 1.69872 1.32640 1.01200 1.48211 0.87010 0.85377 0.79227 0.79270 1.19562 1.20500 1.18664 1.18035 0.97021 0.91098 0.86398 1.22454 1.01520 0.93240 1.01941 1.21019 0.99871 0.99316 0.92366 1.20989 1.03974 0.95616 0.97310 1.20860 0.99243 0.94364 0.97743 1.21066 1.03821 1.00807 0.91020 1.63396 1.11488 1.47264 1.00424 1.23472 0.87328 1.02810 0.96456 1.23054 0.87170 0.94938 0.92274 0.90835 1.86459 1.25816 1.73946 1.50012 1.22841 0.93154 0.90966 0.88720 0.90005 1.86544 1.44505 1.54722 1.50380 1.23750 0.98849 0.98305 0.90721 0.91548 0.90381 0.91335 0.93799 0.93444 0.92083 0.81111 0.86661 0.87031 0.86415 0.84763 0.88593 0.91632 0.77059 0.77300 0.91787 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.66 37.16 0.32 -1.79 16 2 C 0.06 0.99 1.37 -68.87 -0.09 0.89 16 3 H 0.09 1.72 7.25 -51.92 -0.38 1.35 16 4 C 0.53 10.19 5.98 -10.99 -0.07 10.13 16 5 O -0.52 -10.53 11.18 5.55 0.06 -10.46 16 6 N -0.53 -10.70 2.69 -114.74 -0.31 -11.01 16 7 C 0.19 3.94 3.06 -5.20 -0.02 3.92 16 8 C -0.55 -13.71 9.54 -34.44 -0.33 -14.04 16 9 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.88 -24.64 13.96 55.43 0.77 -23.87 16 12 Si 0.87 18.62 27.47 -169.99 -4.67 13.96 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.26 -5.30 6.54 56.52 0.37 -4.93 16 16 C 0.17 3.38 6.49 -83.69 -0.54 2.84 16 17 C -0.17 -3.19 8.98 -39.39 -0.35 -3.55 16 18 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 19 C -0.16 -2.41 10.04 -39.55 -0.40 -2.81 16 20 C -0.10 -1.67 10.04 -39.61 -0.40 -2.07 16 21 C -0.15 -2.76 9.15 -39.39 -0.36 -3.12 16 22 N -0.50 -7.65 4.84 -224.68 -1.09 -8.74 16 23 C 0.03 0.43 4.95 -2.84 -0.01 0.42 16 24 C 0.09 1.25 4.06 -24.91 -0.10 1.14 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 O -0.56 -7.69 13.39 -35.23 -0.47 -8.16 16 27 C 0.10 1.33 4.15 -24.60 -0.10 1.23 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 O -0.56 -6.96 13.47 -35.23 -0.47 -7.44 16 30 C 0.01 0.15 5.41 -2.30 -0.01 0.14 16 31 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 32 H 0.08 1.16 5.35 -51.93 -0.28 0.88 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.92 5.42 -51.92 -0.28 0.63 16 35 H 0.05 0.93 3.64 -51.93 -0.19 0.74 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.17 3.33 4.72 -55.20 -0.26 3.07 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.13 2.63 6.31 -52.49 -0.33 2.30 16 42 H 0.10 1.56 7.94 -51.93 -0.41 1.15 16 43 H 0.07 1.17 6.64 -51.93 -0.34 0.83 16 44 H 0.38 3.76 9.12 45.56 0.42 4.18 16 45 H 0.38 2.81 9.11 45.56 0.42 3.23 16 46 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -30.95 369.00 -8.56 -39.51 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -4.98 Total: 17.43 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.96 Total: -6.78 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.62 Total: -43.62 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.88 Total: -26.06 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.67 Total: 13.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.95 -8.56 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.689 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds