Wall clock time and date at job start Tue Mar 31 2020 18:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.46986 * 2 1 4 4 C 1.50700 * 109.47091 * 240.00125 * 2 1 3 5 5 O 1.21288 * 119.99653 * 246.79797 * 4 2 1 6 6 N 1.34773 * 120.00106 * 66.79839 * 4 2 1 7 7 C 1.46496 * 119.99954 * 5.85763 * 6 4 2 8 8 C 1.50700 * 109.47350 * 86.60993 * 7 6 4 9 9 H 1.07994 * 120.00118 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99793 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99773 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00000 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46864 * 90.00718 * 12 10 8 14 14 H 1.48503 * 109.47117 * 210.00142 * 12 10 8 15 15 H 1.48496 * 109.47652 * 330.00395 * 12 10 8 16 16 C 1.39924 * 119.99665 * 186.13084 * 6 4 2 17 17 C 1.38871 * 120.07291 * 7.40175 * 16 6 4 18 18 C 1.38119 * 119.92656 * 179.67585 * 17 16 6 19 19 C 1.38283 * 120.06806 * 0.61994 * 18 17 16 20 20 C 1.38277 * 120.14478 * 359.67991 * 19 18 17 21 21 C 1.38112 * 120.07255 * 359.97438 * 20 19 18 22 22 N 1.46897 * 109.47346 * 119.99824 * 2 1 3 23 23 C 1.47441 * 111.00231 * 174.15931 * 22 2 1 24 24 C 1.54322 * 107.23579 * 123.25635 * 23 22 2 25 25 H 1.08999 * 110.70299 * 263.90040 * 24 23 22 26 26 O 1.42895 * 110.70626 * 140.66515 * 24 23 22 27 27 C 1.55139 * 103.01517 * 22.28354 * 24 23 22 28 28 H 1.09005 * 110.98951 * 82.44088 * 27 24 23 29 29 O 1.42906 * 110.98654 * 206.25136 * 27 24 23 30 30 C 1.47849 * 111.00188 * 295.00283 * 22 2 1 31 31 H 1.09006 * 109.47420 * 306.12093 * 1 2 3 32 32 H 1.08998 * 109.47562 * 66.12279 * 1 2 3 33 33 H 1.08997 * 109.47184 * 186.12352 * 1 2 3 34 34 H 1.09008 * 109.46727 * 206.60894 * 7 6 4 35 35 H 1.08995 * 109.47456 * 326.60437 * 7 6 4 36 36 H 0.96997 * 119.99926 * 179.97438 * 11 10 8 37 37 H 1.07991 * 120.03556 * 359.97438 * 17 16 6 38 38 H 1.08000 * 119.96417 * 180.29882 * 18 17 16 39 39 H 1.08004 * 119.92658 * 179.69306 * 19 18 17 40 40 H 1.07996 * 119.96597 * 180.02562 * 20 19 18 41 41 H 1.07995 * 120.04134 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.88626 * 242.66468 * 23 22 2 43 43 H 1.09005 * 109.88680 * 3.85241 * 23 22 2 44 44 H 0.96703 * 114.00000 * 66.40113 * 26 24 23 45 45 H 0.96705 * 113.99509 * 173.72195 * 29 27 24 46 46 H 1.09006 * 110.37143 * 332.46051 * 30 22 2 47 47 H 1.09000 * 110.37506 * 94.80108 * 30 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6246 -1.7634 -1.1234 6 7 1.8234 -0.1756 -2.4498 7 6 1.2233 1.1551 -2.5730 8 6 2.3040 2.2026 -2.4960 9 1 3.3347 1.9067 -2.3676 10 6 1.9767 3.5388 -2.5883 11 7 2.9198 4.4530 -2.5206 12 14 0.1939 4.0506 -2.8095 13 1 -0.4344 4.2443 -1.4779 14 1 0.1352 5.3224 -3.5741 15 1 -0.5365 2.9924 -3.5523 16 6 2.1744 -0.8939 -3.5982 17 6 2.5936 -2.2136 -3.4925 18 6 2.9330 -2.9219 -4.6287 19 6 2.8679 -2.3143 -5.8691 20 6 2.4568 -0.9984 -5.9771 21 6 2.1093 -0.2869 -4.8456 22 7 2.0197 -0.6924 1.1994 23 6 3.4868 -0.8346 1.1655 24 6 4.0399 -0.1741 2.4459 25 1 4.3533 0.8506 2.2463 26 8 5.1209 -0.9392 2.9825 27 6 2.8214 -0.1980 3.4057 28 1 2.7286 -1.1678 3.8949 29 8 2.9087 0.8531 4.3700 30 6 1.6463 0.0439 2.4259 31 1 -0.3634 0.6058 0.8302 32 1 -0.3634 0.4160 -0.9397 33 1 -0.3633 -1.0218 0.1096 34 1 0.7083 1.2342 -3.5304 35 1 0.5102 1.3086 -1.7631 36 1 2.6896 5.3930 -2.5859 37 1 2.6496 -2.6870 -2.5235 38 1 3.2544 -3.9498 -4.5476 39 1 3.1385 -2.8688 -6.7556 40 1 2.4067 -0.5269 -6.9474 41 1 1.7879 0.7407 -4.9306 42 1 3.7567 -1.8905 1.1467 43 1 3.8879 -0.3313 0.2857 44 1 5.9077 -0.9564 2.4205 45 1 2.1252 0.9388 4.9303 46 1 1.5428 1.1079 2.2130 47 1 0.7193 -0.3531 2.8396 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278930661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:43 Heat of formation + Delta-G solvation = -88.171193 kcal Electronic energy + Delta-G solvation = -30421.243712 eV Core-core repulsion = 26376.392499 eV Total energy + Delta-G solvation = -4044.851213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.17568 -40.62313 -39.21787 -37.18086 -37.09879 -37.06111 -34.67276 -33.50202 -31.80910 -31.01885 -29.65968 -29.51524 -28.77719 -25.66581 -24.75675 -23.75441 -22.98008 -22.19033 -21.97988 -20.34782 -19.22556 -19.04227 -18.54367 -18.05238 -17.90010 -17.14157 -16.97476 -16.51812 -16.28980 -16.11604 -15.76372 -15.22308 -14.95729 -14.88551 -14.76086 -14.48007 -14.33923 -14.19767 -14.10089 -13.83762 -13.80226 -13.42840 -13.26892 -13.25016 -13.00643 -12.89316 -12.61637 -12.47270 -12.26515 -12.18487 -11.90557 -11.76122 -11.53367 -11.35899 -11.14364 -10.94570 -10.84789 -10.23900 -9.78763 -9.48716 -8.75307 -8.37418 -6.47066 0.38904 0.55767 1.34671 1.37318 1.46331 1.58836 1.88530 2.27707 2.61748 2.88961 2.95139 3.01986 3.21601 3.27709 3.49923 3.89033 3.90747 4.02013 4.06907 4.13974 4.16147 4.19769 4.34347 4.36390 4.42291 4.42749 4.54009 4.62712 4.67283 4.74703 4.76374 4.78752 4.82885 4.86428 4.95472 5.16447 5.22879 5.32333 5.38409 5.58065 5.65388 5.70059 5.72674 5.78603 6.04852 6.28258 6.44368 6.57279 6.62258 6.80615 7.06361 7.18830 8.78708 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.005086 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.783530 B = 5503.699213 C = 7506.966470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 H 0.064 0.936 4 C 0.519 3.481 5 O -0.537 6.537 6 N -0.537 5.537 7 C 0.199 3.801 8 C -0.542 4.542 9 H 0.021 0.979 10 C 0.025 3.975 11 N -0.937 5.937 12 Si 0.933 3.067 13 H -0.252 1.252 14 H -0.283 1.283 15 H -0.237 1.237 16 C 0.138 3.862 17 C -0.189 4.189 18 C -0.104 4.104 19 C -0.149 4.149 20 C -0.101 4.101 21 C -0.169 4.169 22 N -0.499 5.499 23 C 0.037 3.963 24 C 0.086 3.914 25 H 0.056 0.944 26 O -0.563 6.563 27 C 0.112 3.888 28 H 0.092 0.908 29 O -0.571 6.571 30 C 0.015 3.985 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.270 0.730 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.031 0.969 44 H 0.396 0.604 45 H 0.403 0.597 46 H 0.059 0.941 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -10.124 4.740 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.048 4.048 3 H 0.082 0.918 4 C 0.309 3.691 5 O -0.416 6.416 6 N -0.257 5.257 7 C 0.078 3.922 8 C -0.580 4.580 9 H 0.040 0.960 10 C -0.174 4.174 11 N -0.576 5.576 12 Si 0.755 3.245 13 H -0.176 1.176 14 H -0.209 1.209 15 H -0.160 1.160 16 C 0.043 3.957 17 C -0.208 4.208 18 C -0.123 4.123 19 C -0.168 4.168 20 C -0.120 4.120 21 C -0.189 4.189 22 N -0.226 5.226 23 C -0.092 4.092 24 C 0.025 3.975 25 H 0.074 0.926 26 O -0.371 6.371 27 C 0.052 3.948 28 H 0.110 0.890 29 O -0.380 6.380 30 C -0.113 4.113 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.176 0.824 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.137 0.863 42 H 0.107 0.893 43 H 0.050 0.950 44 H 0.246 0.754 45 H 0.254 0.746 46 H 0.077 0.923 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.541 -10.915 5.097 13.708 hybrid contribution 0.336 1.912 -0.677 2.056 sum -6.205 -9.003 4.420 11.794 Atomic orbital electron populations 1.21979 0.89641 1.04288 1.04122 1.21810 0.99276 0.95767 0.87951 0.91800 1.20862 0.78482 0.84939 0.84794 1.90338 1.41553 1.23823 1.85893 1.45632 1.57821 1.17951 1.04309 1.20173 0.94178 0.77955 0.99882 1.21264 0.93328 0.91184 1.52271 0.96012 1.25755 1.02383 0.95907 0.93396 1.70044 1.35570 1.01677 1.50285 0.85923 0.79263 0.79050 0.80298 1.17591 1.20899 1.15993 1.18377 0.98645 0.91956 0.86682 1.22443 1.02698 0.93088 1.02607 1.21393 0.98494 1.00504 0.91869 1.21423 1.01914 0.95165 0.98300 1.21237 0.97884 0.94902 0.97965 1.21121 1.05446 1.00526 0.91850 1.63477 1.10768 1.47481 1.00888 1.23284 0.88093 1.01905 0.95898 1.22979 0.88176 0.93848 0.92489 0.92578 1.86426 1.26397 1.73683 1.50549 1.22727 0.91856 0.91561 0.88649 0.89030 1.86499 1.46367 1.54463 1.50639 1.23890 1.00115 0.97950 0.89312 0.88862 0.90893 0.90318 0.93140 0.91196 0.92040 0.82400 0.83728 0.83064 0.83620 0.86342 0.89307 0.95001 0.75424 0.74616 0.92314 0.85962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.66 71.98 0.62 -3.21 16 2 C 0.06 2.18 1.37 44.17 0.06 2.24 16 3 H 0.06 2.54 7.25 -2.38 -0.02 2.52 16 4 C 0.52 20.84 5.98 87.66 0.52 21.37 16 5 O -0.54 -22.60 11.18 -3.06 -0.03 -22.63 16 6 N -0.54 -22.55 2.69 -635.30 -1.71 -24.26 16 7 C 0.20 8.47 3.06 85.63 0.26 8.74 16 8 C -0.54 -28.62 9.54 25.60 0.24 -28.37 16 9 H 0.02 1.36 8.06 -2.91 -0.02 1.33 16 10 C 0.03 1.35 5.47 84.66 0.46 1.81 16 11 N -0.94 -54.70 13.96 21.45 0.30 -54.40 16 12 Si 0.93 38.03 27.47 68.60 1.88 39.91 16 13 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 14 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 15 H -0.24 -8.64 6.54 99.48 0.65 -7.98 16 16 C 0.14 5.64 6.49 38.16 0.25 5.89 16 17 C -0.19 -7.08 8.98 22.39 0.20 -6.88 16 18 C -0.10 -3.13 10.04 22.25 0.22 -2.91 16 19 C -0.15 -4.06 10.04 22.29 0.22 -3.84 16 20 C -0.10 -3.10 10.04 22.25 0.22 -2.87 16 21 C -0.17 -6.44 9.15 22.39 0.20 -6.23 16 22 N -0.50 -15.26 4.84 -864.75 -4.19 -19.45 16 23 C 0.04 1.21 4.95 86.65 0.43 1.64 16 24 C 0.09 2.54 4.06 31.78 0.13 2.67 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 O -0.56 -15.65 13.39 -148.98 -1.99 -17.64 16 27 C 0.11 2.76 4.15 31.98 0.13 2.89 16 28 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 29 O -0.57 -13.35 13.47 -148.98 -2.01 -15.36 16 30 C 0.01 0.35 5.41 86.77 0.47 0.82 16 31 H 0.09 1.99 7.55 -2.38 -0.02 1.97 16 32 H 0.07 2.03 5.35 -2.39 -0.01 2.01 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.10 5.42 -2.38 -0.01 2.09 16 35 H 0.07 2.69 3.64 -2.39 -0.01 2.68 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.16 6.34 4.72 -45.73 -0.22 6.12 16 38 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 39 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 41 H 0.12 4.78 6.31 -2.91 -0.02 4.76 16 42 H 0.09 3.02 7.94 -2.39 -0.02 3.00 16 43 H 0.03 1.24 6.64 -2.38 -0.02 1.23 16 44 H 0.40 8.07 9.12 -74.06 -0.68 7.39 16 45 H 0.40 4.96 9.11 -74.05 -0.67 4.28 16 46 H 0.06 1.48 7.69 -2.38 -0.02 1.46 16 47 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -71.59 369.00 -3.67 -75.26 By element: Atomic # 1 Polarization: 45.42 SS G_CDS: -0.58 Total: 44.83 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.66 Total: -6.25 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -5.60 Total: -98.12 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -4.04 Total: -55.64 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.88 Total: 39.91 kcal Total: -71.59 -3.67 -75.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278930661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.915 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds