Wall clock time and date at job start Tue Mar 31 2020 18:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47097 * 240.00102 * 2 1 3 5 5 O 1.21287 * 119.99983 * 269.94970 * 4 2 1 6 6 N 1.34773 * 120.00219 * 89.94422 * 4 2 1 7 7 C 1.46500 * 119.99916 * 354.77431 * 6 4 2 8 8 C 1.46507 * 120.00063 * 174.76964 * 6 4 2 9 9 C 1.50694 * 109.46793 * 90.00415 * 8 6 4 10 10 H 1.07994 * 120.00239 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99573 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00224 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99975 * 179.97438 * 11 9 8 14 14 H 1.48512 * 109.46779 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47049 * 119.99782 * 13 11 9 16 16 H 1.48497 * 109.47020 * 240.00210 * 13 11 9 17 17 N 1.46903 * 109.47047 * 120.00029 * 2 1 3 18 18 C 1.46053 * 110.99899 * 175.28456 * 17 2 1 19 19 C 1.51342 * 113.61077 * 193.67979 * 18 17 2 20 20 O 1.43264 * 110.81000 * 294.68502 * 19 18 17 21 21 C 1.36171 * 115.34294 * 85.70169 * 20 19 18 22 22 C 1.38659 * 120.17688 * 110.53468 * 21 20 19 23 23 C 1.38694 * 119.61337 * 182.03547 * 22 21 20 24 24 O 1.35896 * 119.96128 * 179.97438 * 23 22 21 25 25 C 1.38796 * 120.07336 * 0.02562 * 23 22 21 26 26 C 1.38282 * 120.07458 * 359.60817 * 25 23 22 27 27 C 1.38055 * 119.74455 * 359.97438 * 26 25 23 28 28 C 1.46716 * 110.99867 * 301.24617 * 17 2 1 29 29 H 1.08994 * 109.47585 * 185.99295 * 1 2 3 30 30 H 1.09002 * 109.46807 * 305.99725 * 1 2 3 31 31 H 1.09005 * 109.46894 * 65.98802 * 1 2 3 32 32 H 1.09000 * 109.46858 * 94.61521 * 7 6 4 33 33 H 1.09002 * 109.46675 * 214.60945 * 7 6 4 34 34 H 1.08995 * 109.46958 * 334.61375 * 7 6 4 35 35 H 1.08998 * 109.46892 * 210.00375 * 8 6 4 36 36 H 1.09001 * 109.46842 * 330.00338 * 8 6 4 37 37 H 0.96997 * 119.99811 * 179.97438 * 12 11 9 38 38 H 1.09000 * 108.65926 * 314.74217 * 18 17 2 39 39 H 1.08994 * 108.65705 * 72.74571 * 18 17 2 40 40 H 1.09006 * 109.21491 * 55.02220 * 19 18 17 41 41 H 1.09000 * 109.21285 * 174.38762 * 19 18 17 42 42 H 1.08004 * 120.19422 * 2.00863 * 22 21 20 43 43 H 0.96702 * 114.00105 * 270.02104 * 24 23 22 44 44 H 1.07999 * 119.95898 * 179.34043 * 25 23 22 45 45 H 1.07992 * 120.12473 * 179.97438 * 26 25 23 46 46 H 1.08993 * 109.58677 * 30.95324 * 28 17 2 47 47 H 1.09003 * 109.58216 * 270.53731 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2353 -1.9058 -1.2002 6 7 2.2559 -0.0175 -2.3646 7 6 1.9032 1.4026 -2.4370 8 6 2.8518 -0.6843 -3.5251 9 6 1.7595 -1.2588 -4.3899 10 1 0.7251 -1.1395 -4.1036 11 6 2.0810 -1.9376 -5.5462 12 7 3.3407 -2.0832 -5.8946 13 14 0.7271 -2.6503 -6.6179 14 1 -0.5944 -2.3522 -6.0095 15 1 0.7972 -2.0447 -7.9720 16 1 0.9023 -4.1211 -6.7238 17 7 2.0197 -0.6925 1.1995 18 6 3.4753 -0.8098 1.1785 19 6 4.0196 -1.7849 2.2000 20 8 3.7666 -1.3211 3.5316 21 6 2.5489 -1.6529 4.0428 22 6 2.4537 -2.5737 5.0752 23 6 1.2049 -2.9348 5.5585 24 8 1.1034 -3.8370 6.5698 25 6 0.0587 -2.3767 5.0097 26 6 0.1596 -1.4533 3.9854 27 6 1.4042 -1.0889 3.5119 28 6 1.5250 -0.0446 2.4194 29 1 -0.3634 -1.0220 0.1073 30 1 -0.3633 0.6040 0.8315 31 1 -0.3633 0.4182 -0.9388 32 1 2.7778 2.0069 -2.1963 33 1 1.5626 1.6414 -3.4445 34 1 1.1068 1.6159 -1.7240 35 1 3.4299 0.0377 -4.1017 36 1 3.5069 -1.4868 -3.1862 37 1 3.5669 -2.5611 -6.7078 38 1 3.7846 -1.1363 0.1856 39 1 3.9071 0.1721 1.3719 40 1 3.5412 -2.7544 2.0610 41 1 5.0948 -1.8918 2.0564 42 1 3.3469 -3.0074 5.5002 43 1 1.0361 -4.7548 6.2728 44 1 -0.9133 -2.6673 5.3803 45 1 -0.7317 -1.0188 3.5576 46 1 0.5478 0.3981 2.2274 47 1 2.2250 0.7308 2.7307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285489086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:02 Heat of formation + Delta-G solvation = -63.199911 kcal Electronic energy + Delta-G solvation = -29700.890374 eV Core-core repulsion = 25657.121997 eV Total energy + Delta-G solvation = -4043.768377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84623 -39.56240 -38.55608 -36.66459 -36.29254 -34.80351 -32.76478 -31.83534 -31.28754 -30.46326 -28.07511 -27.56165 -26.31823 -25.67362 -23.74785 -23.17637 -22.08399 -21.63963 -20.81707 -18.89071 -18.43267 -17.16854 -16.89654 -16.54768 -16.52919 -16.05144 -15.58284 -15.46924 -15.20133 -14.87848 -14.61655 -14.27782 -14.02041 -13.91712 -13.70853 -13.45836 -13.26257 -12.77245 -12.39643 -12.25697 -12.15393 -12.05150 -11.92776 -11.81669 -11.71966 -11.45852 -11.22648 -11.04217 -11.01451 -10.86079 -10.77500 -10.62441 -10.20231 -10.17662 -9.62937 -8.97265 -8.89250 -8.56692 -8.46325 -8.23632 -7.68020 -6.06922 -4.11305 0.97287 1.08508 3.03639 3.28020 3.30671 3.36137 3.39822 3.55478 3.87130 4.05994 4.10714 4.42579 4.58219 4.73097 4.84007 4.90549 4.99859 5.09285 5.15828 5.21132 5.23864 5.26120 5.28197 5.38991 5.42562 5.47097 5.55944 5.67295 5.68976 5.81586 5.84914 5.87026 5.92102 6.06774 6.13473 6.18191 6.28381 6.35839 6.39524 6.85667 7.02250 7.07557 7.29815 7.37715 7.44468 7.50156 7.89569 8.20330 8.36577 8.87952 9.06164 9.53938 11.01244 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002788 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.116490 B =10042.381174 C =10218.051944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 H 0.057 0.943 4 C 0.508 3.492 5 O -0.519 6.519 6 N -0.604 5.604 7 C 0.080 3.920 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.520 5.520 18 C 0.025 3.975 19 C 0.073 3.927 20 O -0.332 6.332 21 C 0.125 3.875 22 C -0.160 4.160 23 C 0.115 3.885 24 O -0.499 6.499 25 C -0.155 4.155 26 C -0.074 4.074 27 C -0.106 4.106 28 C 0.094 3.906 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.100 0.900 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.391 0.609 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.090 0.910 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 4.859 20.254 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 H 0.075 0.925 4 C 0.293 3.707 5 O -0.395 6.395 6 N -0.337 5.337 7 C -0.064 4.064 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.245 5.245 18 C -0.102 4.102 19 C -0.002 4.002 20 O -0.249 6.249 21 C 0.081 3.919 22 C -0.178 4.178 23 C 0.071 3.929 24 O -0.310 6.310 25 C -0.174 4.174 26 C -0.093 4.093 27 C -0.108 4.108 28 C -0.033 4.033 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.247 0.753 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.109 0.891 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.795 4.288 20.508 21.292 hybrid contribution -0.492 -0.077 -1.158 1.260 sum -4.286 4.212 19.351 20.262 Atomic orbital electron populations 1.21842 0.92260 1.03740 1.02070 1.21670 0.97259 0.95770 0.89545 0.92524 1.20035 0.79100 0.87705 0.83858 1.90687 1.50745 1.14116 1.83923 1.48206 1.61458 1.09823 1.14232 1.21691 0.99113 0.82585 1.02981 1.19276 0.93832 0.92940 0.81152 1.21447 0.93301 1.35150 1.06312 0.92414 1.24940 0.95624 0.95924 0.97670 1.69936 1.16480 1.42244 1.24816 0.86447 0.82031 0.78989 0.79979 1.19793 1.20987 1.20866 1.60669 1.10559 1.52986 1.00332 1.22232 0.87250 0.99038 1.01718 1.22653 1.01106 0.97584 0.78838 1.86306 1.31142 1.76089 1.31332 1.18284 0.85006 0.94155 0.94445 1.21415 0.98025 0.99009 0.99400 1.18203 0.91663 0.93796 0.89286 1.84812 1.95841 1.19274 1.31026 1.21400 0.98347 0.99911 0.97729 1.20764 0.96614 0.96496 0.95408 1.20225 0.92886 0.99341 0.98323 1.21267 1.01430 0.93034 0.87585 0.90681 0.91921 0.91211 0.93821 0.90734 0.92299 0.94998 0.94058 0.92773 0.88233 0.94547 0.91076 0.87650 0.84813 0.75301 0.85236 0.85053 0.89134 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.59 37.16 0.32 -1.48 16 2 C 0.07 1.01 1.64 -68.86 -0.11 0.90 16 3 H 0.06 0.73 6.80 -51.93 -0.35 0.38 16 4 C 0.51 10.18 5.49 -10.99 -0.06 10.12 16 5 O -0.52 -12.72 15.14 5.55 0.08 -12.64 16 6 N -0.60 -12.40 2.86 -182.95 -0.52 -12.93 16 7 C 0.08 1.23 9.88 59.85 0.59 1.82 16 8 C 0.25 6.33 5.14 -5.19 -0.03 6.30 16 9 C -0.52 -14.66 9.39 -34.44 -0.32 -14.98 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 13 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.52 -7.54 4.01 -230.83 -0.93 -8.46 16 18 C 0.03 0.37 4.89 -5.12 -0.03 0.34 16 19 C 0.07 0.96 6.62 36.32 0.24 1.20 16 20 O -0.33 -4.50 10.04 -20.28 -0.20 -4.71 16 21 C 0.13 1.64 5.64 -39.43 -0.22 1.41 16 22 C -0.16 -1.88 9.95 -39.26 -0.39 -2.27 16 23 C 0.12 1.24 6.70 -39.21 -0.26 0.98 16 24 O -0.50 -4.62 13.50 -19.41 -0.26 -4.88 16 25 C -0.16 -1.57 9.99 -39.36 -0.39 -1.96 16 26 C -0.07 -0.78 9.69 -39.63 -0.38 -1.16 16 27 C -0.11 -1.31 5.45 -104.25 -0.57 -1.87 16 28 C 0.09 1.11 5.07 -4.63 -0.02 1.09 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.59 6.21 -51.93 -0.32 0.27 16 31 H 0.07 0.88 7.17 -51.93 -0.37 0.51 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 34 H 0.06 0.73 5.34 -51.93 -0.28 0.45 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 1.71 5.71 -51.93 -0.30 1.41 16 39 H 0.04 0.49 7.90 -51.93 -0.41 0.08 16 40 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 41 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 43 H 0.39 1.80 9.06 45.56 0.41 2.21 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.13 1.09 7.98 -52.49 -0.42 0.67 16 46 H 0.09 0.89 5.25 -51.93 -0.27 0.62 16 47 H 0.05 0.64 7.76 -51.93 -0.40 0.24 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -34.75 376.70 -8.19 -42.94 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.01 Total: 1.88 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.74 Total: 2.05 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.71 Total: -47.03 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.38 Total: -22.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.75 -8.19 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285489086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.265 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds