Wall clock time and date at job start Tue Mar 31 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47097 * 240.00102 * 2 1 3 5 5 O 1.21287 * 119.99983 * 269.94970 * 4 2 1 6 6 N 1.34773 * 120.00219 * 89.94422 * 4 2 1 7 7 C 1.46500 * 119.99916 * 354.77431 * 6 4 2 8 8 C 1.46507 * 120.00063 * 174.76964 * 6 4 2 9 9 C 1.50694 * 109.46793 * 90.00415 * 8 6 4 10 10 H 1.07994 * 120.00239 * 359.97438 * 9 8 6 11 11 C 1.37881 * 119.99573 * 180.02562 * 9 8 6 12 12 N 1.31513 * 120.00224 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99975 * 179.97438 * 11 9 8 14 14 H 1.48512 * 109.46779 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47049 * 119.99782 * 13 11 9 16 16 H 1.48497 * 109.47020 * 240.00210 * 13 11 9 17 17 N 1.46903 * 109.47047 * 120.00029 * 2 1 3 18 18 C 1.46053 * 110.99899 * 175.28456 * 17 2 1 19 19 C 1.51342 * 113.61077 * 193.67979 * 18 17 2 20 20 O 1.43264 * 110.81000 * 294.68502 * 19 18 17 21 21 C 1.36171 * 115.34294 * 85.70169 * 20 19 18 22 22 C 1.38659 * 120.17688 * 110.53468 * 21 20 19 23 23 C 1.38694 * 119.61337 * 182.03547 * 22 21 20 24 24 O 1.35896 * 119.96128 * 179.97438 * 23 22 21 25 25 C 1.38796 * 120.07336 * 0.02562 * 23 22 21 26 26 C 1.38282 * 120.07458 * 359.60817 * 25 23 22 27 27 C 1.38055 * 119.74455 * 359.97438 * 26 25 23 28 28 C 1.46716 * 110.99867 * 301.24617 * 17 2 1 29 29 H 1.08994 * 109.47585 * 185.99295 * 1 2 3 30 30 H 1.09002 * 109.46807 * 305.99725 * 1 2 3 31 31 H 1.09005 * 109.46894 * 65.98802 * 1 2 3 32 32 H 1.09000 * 109.46858 * 94.61521 * 7 6 4 33 33 H 1.09002 * 109.46675 * 214.60945 * 7 6 4 34 34 H 1.08995 * 109.46958 * 334.61375 * 7 6 4 35 35 H 1.08998 * 109.46892 * 210.00375 * 8 6 4 36 36 H 1.09001 * 109.46842 * 330.00338 * 8 6 4 37 37 H 0.96997 * 119.99811 * 179.97438 * 12 11 9 38 38 H 1.09000 * 108.65926 * 314.74217 * 18 17 2 39 39 H 1.08994 * 108.65705 * 72.74571 * 18 17 2 40 40 H 1.09006 * 109.21491 * 55.02220 * 19 18 17 41 41 H 1.09000 * 109.21285 * 174.38762 * 19 18 17 42 42 H 1.08004 * 120.19422 * 2.00863 * 22 21 20 43 43 H 0.96702 * 114.00105 * 270.02104 * 24 23 22 44 44 H 1.07999 * 119.95898 * 179.34043 * 25 23 22 45 45 H 1.07992 * 120.12473 * 179.97438 * 26 25 23 46 46 H 1.08993 * 109.58677 * 30.95324 * 28 17 2 47 47 H 1.09003 * 109.58216 * 270.53731 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2353 -1.9058 -1.2002 6 7 2.2559 -0.0175 -2.3646 7 6 1.9032 1.4026 -2.4370 8 6 2.8518 -0.6843 -3.5251 9 6 1.7595 -1.2588 -4.3899 10 1 0.7251 -1.1395 -4.1036 11 6 2.0810 -1.9376 -5.5462 12 7 3.3407 -2.0832 -5.8946 13 14 0.7271 -2.6503 -6.6179 14 1 -0.5944 -2.3522 -6.0095 15 1 0.7972 -2.0447 -7.9720 16 1 0.9023 -4.1211 -6.7238 17 7 2.0197 -0.6925 1.1995 18 6 3.4753 -0.8098 1.1785 19 6 4.0196 -1.7849 2.2000 20 8 3.7666 -1.3211 3.5316 21 6 2.5489 -1.6529 4.0428 22 6 2.4537 -2.5737 5.0752 23 6 1.2049 -2.9348 5.5585 24 8 1.1034 -3.8370 6.5698 25 6 0.0587 -2.3767 5.0097 26 6 0.1596 -1.4533 3.9854 27 6 1.4042 -1.0889 3.5119 28 6 1.5250 -0.0446 2.4194 29 1 -0.3634 -1.0220 0.1073 30 1 -0.3633 0.6040 0.8315 31 1 -0.3633 0.4182 -0.9388 32 1 2.7778 2.0069 -2.1963 33 1 1.5626 1.6414 -3.4445 34 1 1.1068 1.6159 -1.7240 35 1 3.4299 0.0377 -4.1017 36 1 3.5069 -1.4868 -3.1862 37 1 3.5669 -2.5611 -6.7078 38 1 3.7846 -1.1363 0.1856 39 1 3.9071 0.1721 1.3719 40 1 3.5412 -2.7544 2.0610 41 1 5.0948 -1.8918 2.0564 42 1 3.3469 -3.0074 5.5002 43 1 1.0361 -4.7548 6.2728 44 1 -0.9133 -2.6673 5.3803 45 1 -0.7317 -1.0188 3.5576 46 1 0.5478 0.3981 2.2274 47 1 2.2250 0.7308 2.7307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285489086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:01 Heat of formation + Delta-G solvation = -89.454342 kcal Electronic energy + Delta-G solvation = -29702.028851 eV Core-core repulsion = 25657.121997 eV Total energy + Delta-G solvation = -4044.906854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84200 -40.87541 -39.49692 -37.85026 -37.14180 -36.50899 -34.77139 -33.03749 -32.20729 -31.35811 -29.81667 -28.68637 -27.53695 -26.94784 -25.41064 -24.15035 -23.36386 -22.63418 -21.89193 -19.89028 -19.73217 -18.68872 -18.29209 -17.96857 -17.61722 -17.20102 -16.79366 -16.51365 -16.44026 -16.29912 -15.81742 -15.53993 -15.39473 -14.90827 -14.70590 -14.65588 -14.34407 -14.17169 -13.96682 -13.53060 -13.47354 -13.22638 -13.14727 -12.99110 -12.87610 -12.78447 -12.72876 -12.56781 -12.42647 -12.21127 -12.06500 -11.99480 -11.67400 -11.58258 -11.20339 -10.65444 -10.47081 -9.80740 -9.45555 -9.41832 -9.28587 -8.22767 -6.36996 0.12447 0.25153 1.35743 1.38366 1.49925 1.79380 2.13813 2.28036 2.40963 2.72952 3.04612 3.06966 3.33990 3.59194 3.74766 3.88179 3.93902 4.01121 4.05084 4.14713 4.16248 4.22979 4.34575 4.38142 4.42408 4.50650 4.62621 4.68090 4.69452 4.73929 4.82189 4.89091 4.92501 4.96368 5.01727 5.20777 5.22164 5.27998 5.37924 5.50006 5.56000 5.61788 5.80421 5.89796 6.00925 6.06133 6.37978 6.70711 6.79595 6.82108 7.28894 7.50265 8.84362 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002788 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.116490 B =10042.381174 C =10218.051944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.085 0.915 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.612 5.612 7 C 0.075 3.925 8 C 0.262 3.738 9 C -0.537 4.537 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.266 1.266 15 H -0.269 1.269 16 H -0.283 1.283 17 N -0.537 5.537 18 C 0.031 3.969 19 C 0.079 3.921 20 O -0.337 6.337 21 C 0.100 3.900 22 C -0.174 4.174 23 C 0.115 3.885 24 O -0.506 6.506 25 C -0.155 4.155 26 C -0.072 4.072 27 C -0.123 4.123 28 C 0.098 3.902 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.023 0.977 36 H -0.004 1.004 37 H 0.267 0.733 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.411 0.589 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.117 0.883 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 6.339 21.524 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.103 0.897 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.190 1.190 15 H -0.194 1.194 16 H -0.209 1.209 17 N -0.262 5.262 18 C -0.098 4.098 19 C 0.004 3.996 20 O -0.254 6.254 21 C 0.056 3.944 22 C -0.193 4.193 23 C 0.071 3.929 24 O -0.320 6.320 25 C -0.173 4.173 26 C -0.091 4.091 27 C -0.124 4.124 28 C -0.028 4.028 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.139 0.861 42 H 0.153 0.847 43 H 0.271 0.729 44 H 0.171 0.829 45 H 0.176 0.824 46 H 0.135 0.865 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.428 5.806 21.800 23.458 hybrid contribution 0.347 -0.590 -1.460 1.612 sum -6.081 5.216 20.341 21.861 Atomic orbital electron populations 1.21879 0.90179 1.03429 1.04040 1.21622 0.98593 0.95981 0.86828 0.89697 1.21058 0.77672 0.87298 0.85017 1.90650 1.53018 1.16924 1.84954 1.48218 1.61177 1.11935 1.13096 1.21984 1.01406 0.79480 1.03863 1.18719 0.92920 0.91744 0.82552 1.21707 0.93430 1.35558 1.06912 0.92921 1.25853 0.98038 0.96198 0.99141 1.70051 1.18482 1.42933 1.25472 0.85385 0.79102 0.77909 0.78522 1.19038 1.19418 1.20905 1.60632 1.10313 1.54063 1.01235 1.22120 0.87890 0.99688 1.00070 1.22587 1.01834 0.96290 0.78915 1.86292 1.31890 1.76264 1.30996 1.18571 0.85134 0.95376 0.95324 1.21541 0.98831 0.99257 0.99638 1.18315 0.91548 0.93955 0.89126 1.84757 1.95750 1.20583 1.30869 1.21700 0.99067 0.99277 0.97296 1.21094 0.96803 0.96057 0.95111 1.20394 0.93315 0.99925 0.98805 1.21344 1.02593 0.92823 0.86039 0.92721 0.87620 0.90964 0.91438 0.91422 0.88611 0.95876 0.98624 0.92455 0.91703 0.93381 0.92930 0.86055 0.84703 0.72938 0.82936 0.82411 0.86517 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.59 71.98 0.62 -2.44 16 2 C 0.08 2.23 1.64 44.17 0.07 2.30 16 3 H 0.09 1.89 6.80 -2.39 -0.02 1.87 16 4 C 0.50 20.39 5.49 87.66 0.48 20.88 16 5 O -0.58 -29.71 15.14 -3.05 -0.05 -29.75 16 6 N -0.61 -25.43 2.86 -851.13 -2.43 -27.86 16 7 C 0.07 2.15 9.88 127.77 1.26 3.41 16 8 C 0.26 14.04 5.14 85.63 0.44 14.48 16 9 C -0.54 -30.89 9.39 25.60 0.24 -30.65 16 10 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.37 5.46 84.66 0.46 0.83 16 12 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 13 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 17 N -0.54 -14.97 4.01 -884.21 -3.54 -18.52 16 18 C 0.03 0.90 4.89 85.92 0.42 1.32 16 19 C 0.08 2.13 6.62 71.44 0.47 2.60 16 20 O -0.34 -9.18 10.04 -95.50 -0.96 -10.14 16 21 C 0.10 2.56 5.64 22.37 0.13 2.69 16 22 C -0.17 -4.03 9.95 22.48 0.22 -3.80 16 23 C 0.12 2.31 6.70 22.51 0.15 2.47 16 24 O -0.51 -8.46 13.50 -92.38 -1.25 -9.71 16 25 C -0.16 -2.73 9.99 22.41 0.22 -2.51 16 26 C -0.07 -1.31 9.69 22.24 0.22 -1.10 16 27 C -0.12 -2.80 5.45 -19.62 -0.11 -2.91 16 28 C 0.10 2.07 5.07 85.88 0.44 2.51 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 1.44 6.21 -2.39 -0.01 1.42 16 31 H 0.07 1.58 7.17 -2.38 -0.02 1.56 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 34 H 0.10 2.03 5.34 -2.39 -0.01 2.01 16 35 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 36 H 0.00 -0.27 7.50 -2.39 -0.02 -0.29 16 37 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 38 H 0.06 2.37 5.71 -2.39 -0.01 2.35 16 39 H 0.05 1.26 7.90 -2.39 -0.02 1.24 16 40 H 0.05 1.59 7.90 -2.38 -0.02 1.57 16 41 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.41 3.03 9.06 -74.06 -0.67 2.36 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.16 1.95 7.98 -2.91 -0.02 1.93 16 46 H 0.12 1.77 5.25 -2.39 -0.01 1.76 16 47 H 0.06 1.19 7.76 -2.39 -0.02 1.17 16 Total: -1.00 -79.64 376.70 0.15 -79.49 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.33 Total: 15.40 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 5.74 Total: 10.08 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -5.69 Total: -102.30 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -2.25 Total: -49.60 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -79.64 0.15 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285489086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.964 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds