Wall clock time and date at job start Tue Mar 31 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50702 * 109.47134 * 120.00039 * 2 1 3 5 5 O 1.21283 * 119.99575 * 120.00304 * 4 2 1 6 6 N 1.34771 * 120.00335 * 299.99763 * 4 2 1 7 7 C 1.46506 * 119.99594 * 0.02562 * 6 4 2 8 8 C 1.46501 * 120.00308 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.46743 * 269.99953 * 8 6 4 10 10 H 1.07996 * 120.00425 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99720 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00210 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99953 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47037 * 89.99915 * 13 11 9 15 15 H 1.48499 * 109.46918 * 209.99699 * 13 11 9 16 16 H 1.48497 * 109.46912 * 330.00156 * 13 11 9 17 17 N 1.46897 * 109.47057 * 239.99978 * 2 1 3 18 18 C 1.46011 * 111.00203 * 306.04332 * 17 2 1 19 19 C 1.51363 * 113.62182 * 194.11534 * 18 17 2 20 20 O 1.43331 * 110.69248 * 295.01444 * 19 18 17 21 21 C 1.36015 * 115.31158 * 85.35503 * 20 19 18 22 22 C 1.38746 * 120.06660 * 110.66820 * 21 20 19 23 23 C 1.38658 * 119.67102 * 181.08609 * 22 21 20 24 24 O 1.35898 * 119.92885 * 180.02562 * 23 22 21 25 25 C 1.38803 * 120.14208 * 0.03258 * 23 22 21 26 26 C 1.38307 * 120.00232 * 359.57084 * 25 23 22 27 27 C 1.37967 * 119.70947 * 359.94567 * 26 25 23 28 28 C 1.46691 * 111.00127 * 72.10414 * 17 2 1 29 29 H 1.08996 * 109.47066 * 60.00177 * 1 2 3 30 30 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46772 * 299.99376 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.00388 * 7 6 4 33 33 H 1.09004 * 109.47073 * 209.99877 * 7 6 4 34 34 H 1.09000 * 109.47212 * 329.99960 * 7 6 4 35 35 H 1.09000 * 109.46877 * 29.99967 * 8 6 4 36 36 H 1.09000 * 109.47251 * 150.00072 * 8 6 4 37 37 H 0.96994 * 120.00233 * 180.02562 * 12 11 9 38 38 H 1.08999 * 108.65555 * 315.18873 * 18 17 2 39 39 H 1.09001 * 108.65278 * 73.18651 * 18 17 2 40 40 H 1.08997 * 109.23206 * 55.33141 * 19 18 17 41 41 H 1.09008 * 109.23447 * 174.74272 * 19 18 17 42 42 H 1.07994 * 120.16494 * 1.04962 * 22 21 20 43 43 H 0.96697 * 113.99955 * 270.00148 * 24 23 22 44 44 H 1.07997 * 119.99775 * 179.55166 * 25 23 22 45 45 H 1.07990 * 120.14708 * 179.97438 * 26 25 23 46 46 H 1.08997 * 109.58327 * 270.11018 * 28 17 2 47 47 H 1.09002 * 109.58050 * 30.52535 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1956 -0.9403 3.6507 9 6 1.2034 -1.9977 4.0611 10 1 0.2994 -2.1415 3.4880 11 6 1.4503 -2.7824 5.1677 12 7 0.5847 -3.7055 5.5256 13 14 3.0143 -2.5342 6.1585 14 1 2.7684 -1.5356 7.2298 15 1 3.4234 -3.8245 6.7691 16 1 4.0943 -2.0450 5.2644 17 7 2.0196 -0.6925 -1.1994 18 6 1.4379 -2.0274 -1.3071 19 6 2.1400 -2.9157 -2.3116 20 8 1.9893 -2.3967 -3.6391 21 6 2.9017 -1.4558 -4.0027 22 6 3.8602 -1.7510 -4.9615 23 6 4.8005 -0.7932 -5.3096 24 8 5.7413 -1.0765 -6.2484 25 6 4.7829 0.4543 -4.7012 26 6 3.8207 0.7472 -3.7519 27 6 2.8804 -0.2046 -3.4150 28 6 1.7981 0.1182 -2.4018 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.1837 0.6425 2.6226 33 1 1.1219 1.4665 3.5085 34 1 1.0273 1.5996 1.7360 35 1 3.1560 -1.4079 3.4334 36 1 2.3166 -0.2215 4.4611 37 1 0.7581 -4.2572 6.3042 38 1 1.4802 -2.5061 -0.3288 39 1 0.3930 -1.9295 -1.6016 40 1 3.2003 -2.9684 -2.0649 41 1 1.7109 -3.9168 -2.2673 42 1 3.8743 -2.7220 -5.4338 43 1 6.5534 -1.4588 -5.8886 44 1 5.5208 1.1960 -4.9689 45 1 3.8051 1.7169 -3.2768 46 1 0.8208 -0.1147 -2.8244 47 1 1.8438 1.1759 -2.1427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285489091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:05 Heat of formation + Delta-G solvation = -55.497282 kcal Electronic energy + Delta-G solvation = -29800.915782 eV Core-core repulsion = 25757.481416 eV Total energy + Delta-G solvation = -4043.434366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.86082 -39.68246 -38.56944 -36.74459 -36.32436 -35.00255 -32.74807 -31.71229 -31.21044 -30.32966 -28.52249 -27.67791 -26.32506 -25.53468 -24.20921 -23.09438 -22.13843 -21.59657 -20.57768 -18.86857 -18.48994 -17.09090 -16.90912 -16.84048 -16.63264 -15.96549 -15.56775 -15.49459 -15.06468 -14.86896 -14.53257 -14.29719 -14.05684 -14.03053 -13.79744 -13.56141 -13.11281 -12.98339 -12.56096 -12.43562 -12.26326 -12.01130 -11.91342 -11.87451 -11.75826 -11.55622 -11.42753 -11.21814 -10.92302 -10.85953 -10.70656 -10.51160 -10.15616 -10.12358 -9.57788 -8.98810 -8.94841 -8.62453 -8.55615 -8.20023 -7.72813 -6.12102 -4.10914 0.98013 1.08961 3.06580 3.24319 3.28753 3.32763 3.37279 3.52116 3.84451 4.06175 4.13040 4.36880 4.57436 4.74455 4.83285 4.87453 4.99553 5.07963 5.16270 5.18023 5.22402 5.25554 5.30794 5.39704 5.45192 5.46442 5.51849 5.67167 5.68552 5.72775 5.80633 5.88995 6.03291 6.05920 6.08616 6.19065 6.22516 6.36518 6.40836 6.60330 6.88808 7.01584 7.08294 7.30180 7.32608 7.45894 7.57822 8.20601 8.43323 8.89192 8.96199 9.48347 11.01247 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.002891 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.542009 B = 9684.024358 C = 9929.911985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.071 3.929 3 H 0.102 0.898 4 C 0.514 3.486 5 O -0.523 6.523 6 N -0.598 5.598 7 C 0.083 3.917 8 C 0.217 3.783 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.264 1.264 17 N -0.520 5.520 18 C 0.024 3.976 19 C 0.072 3.928 20 O -0.332 6.332 21 C 0.128 3.872 22 C -0.161 4.161 23 C 0.115 3.885 24 O -0.499 6.499 25 C -0.156 4.156 26 C -0.075 4.075 27 C -0.109 4.109 28 C 0.100 3.900 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.391 0.609 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.057 0.943 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.463 10.843 -18.503 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.040 4.040 3 H 0.120 0.880 4 C 0.299 3.701 5 O -0.398 6.398 6 N -0.330 5.330 7 C -0.061 4.061 8 C 0.096 3.904 9 C -0.566 4.566 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.188 1.188 17 N -0.243 5.243 18 C -0.104 4.104 19 C -0.002 4.002 20 O -0.249 6.249 21 C 0.084 3.916 22 C -0.180 4.180 23 C 0.070 3.930 24 O -0.310 6.310 25 C -0.175 4.175 26 C -0.094 4.094 27 C -0.110 4.110 28 C -0.027 4.027 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.247 0.753 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.075 0.925 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.720 10.231 -18.835 21.948 hybrid contribution 0.255 0.004 1.071 1.101 sum 4.975 10.235 -17.764 21.097 Atomic orbital electron populations 1.22681 0.95345 1.03852 1.03483 1.21655 0.94293 0.98307 0.89756 0.87975 1.20060 0.81171 0.84975 0.83854 1.90639 1.37670 1.25698 1.85828 1.47797 1.50239 1.28296 1.06697 1.21811 0.95332 0.87382 1.01570 1.19677 0.96542 0.92557 0.81611 1.21304 1.06546 1.16746 1.12031 0.90863 1.24858 0.96425 0.94656 0.97075 1.69891 1.35724 1.21476 1.26525 0.86866 0.84387 0.78014 0.80599 1.20127 1.20944 1.18812 1.60691 1.60504 1.02353 1.00769 1.22307 0.96029 0.89851 1.02204 1.22705 1.02044 0.96506 0.78945 1.86299 1.50582 1.54999 1.33017 1.18267 0.89734 0.88370 0.95259 1.21452 0.95377 1.00483 1.00653 1.18203 0.91550 0.92642 0.90571 1.84814 1.28363 1.84711 1.33079 1.21399 1.01059 0.97081 0.97949 1.20727 0.93290 0.99021 0.96322 1.20255 0.98166 0.93813 0.98771 1.21170 0.95291 0.97573 0.88673 0.92099 0.91456 0.89916 0.92526 0.91441 0.92292 0.94084 0.95718 0.92551 0.87132 0.94382 0.91201 0.87649 0.84837 0.75339 0.85265 0.85101 0.92528 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 8.15 37.16 0.30 -2.10 16 2 C 0.07 1.01 1.86 -68.87 -0.13 0.88 16 3 H 0.10 1.20 6.99 -51.93 -0.36 0.84 16 4 C 0.51 9.94 6.63 -10.99 -0.07 9.86 16 5 O -0.52 -12.25 14.03 5.55 0.08 -12.17 16 6 N -0.60 -11.70 2.86 -182.95 -0.52 -12.22 16 7 C 0.08 1.18 8.85 59.85 0.53 1.71 16 8 C 0.22 5.15 4.27 -5.19 -0.02 5.13 16 9 C -0.53 -14.80 9.94 -34.44 -0.34 -15.14 16 10 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 13 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 17 N -0.52 -7.42 4.03 -230.80 -0.93 -8.35 16 18 C 0.02 0.35 3.80 -5.13 -0.02 0.33 16 19 C 0.07 0.99 6.64 36.33 0.24 1.23 16 20 O -0.33 -4.63 10.04 -19.79 -0.20 -4.83 16 21 C 0.13 1.69 5.63 -39.39 -0.22 1.47 16 22 C -0.16 -1.92 9.94 -39.24 -0.39 -2.31 16 23 C 0.11 1.25 6.70 -39.22 -0.26 0.98 16 24 O -0.50 -4.64 13.50 -19.42 -0.26 -4.90 16 25 C -0.16 -1.57 9.99 -39.35 -0.39 -1.96 16 26 C -0.07 -0.78 9.69 -39.66 -0.38 -1.16 16 27 C -0.11 -1.33 5.47 -104.21 -0.57 -1.90 16 28 C 0.10 1.17 4.50 -4.58 -0.02 1.15 16 29 H 0.06 0.61 7.54 -51.93 -0.39 0.22 16 30 H 0.07 0.96 6.63 -51.93 -0.34 0.61 16 31 H 0.08 0.97 4.53 -51.93 -0.24 0.73 16 32 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 33 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 34 H 0.06 0.63 6.01 -51.93 -0.31 0.32 16 35 H 0.04 1.06 6.48 -51.93 -0.34 0.73 16 36 H 0.02 0.55 7.32 -51.93 -0.38 0.17 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.11 2.01 5.69 -51.93 -0.30 1.71 16 39 H 0.04 0.53 6.74 -51.93 -0.35 0.18 16 40 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 41 H 0.11 1.24 8.14 -51.92 -0.42 0.82 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.39 1.80 9.06 45.56 0.41 2.21 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.06 7.99 -52.49 -0.42 0.64 16 46 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 47 H 0.08 0.78 7.33 -51.93 -0.38 0.40 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -35.22 367.52 -7.88 -43.10 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.83 Total: 3.67 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.85 Total: 0.15 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.68 Total: -47.12 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.38 Total: -21.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.22 -7.88 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285489091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.399 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds