Wall clock time and date at job start Tue Mar 31 2020 18:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 C 1.50702 * 109.47134 * 120.00039 * 2 1 3 5 5 O 1.21283 * 119.99575 * 120.00304 * 4 2 1 6 6 N 1.34771 * 120.00335 * 299.99763 * 4 2 1 7 7 C 1.46506 * 119.99594 * 0.02562 * 6 4 2 8 8 C 1.46501 * 120.00308 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.46743 * 269.99953 * 8 6 4 10 10 H 1.07996 * 120.00425 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99720 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00210 * 180.02562 * 11 9 8 13 13 Si 1.86807 * 119.99953 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47037 * 89.99915 * 13 11 9 15 15 H 1.48499 * 109.46918 * 209.99699 * 13 11 9 16 16 H 1.48497 * 109.46912 * 330.00156 * 13 11 9 17 17 N 1.46897 * 109.47057 * 239.99978 * 2 1 3 18 18 C 1.46011 * 111.00203 * 306.04332 * 17 2 1 19 19 C 1.51363 * 113.62182 * 194.11534 * 18 17 2 20 20 O 1.43331 * 110.69248 * 295.01444 * 19 18 17 21 21 C 1.36015 * 115.31158 * 85.35503 * 20 19 18 22 22 C 1.38746 * 120.06660 * 110.66820 * 21 20 19 23 23 C 1.38658 * 119.67102 * 181.08609 * 22 21 20 24 24 O 1.35898 * 119.92885 * 180.02562 * 23 22 21 25 25 C 1.38803 * 120.14208 * 0.03258 * 23 22 21 26 26 C 1.38307 * 120.00232 * 359.57084 * 25 23 22 27 27 C 1.37967 * 119.70947 * 359.94567 * 26 25 23 28 28 C 1.46691 * 111.00127 * 72.10414 * 17 2 1 29 29 H 1.08996 * 109.47066 * 60.00177 * 1 2 3 30 30 H 1.09002 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46772 * 299.99376 * 1 2 3 32 32 H 1.09001 * 109.47060 * 90.00388 * 7 6 4 33 33 H 1.09004 * 109.47073 * 209.99877 * 7 6 4 34 34 H 1.09000 * 109.47212 * 329.99960 * 7 6 4 35 35 H 1.09000 * 109.46877 * 29.99967 * 8 6 4 36 36 H 1.09000 * 109.47251 * 150.00072 * 8 6 4 37 37 H 0.96994 * 120.00233 * 180.02562 * 12 11 9 38 38 H 1.08999 * 108.65555 * 315.18873 * 18 17 2 39 39 H 1.09001 * 108.65278 * 73.18651 * 18 17 2 40 40 H 1.08997 * 109.23206 * 55.33141 * 19 18 17 41 41 H 1.09008 * 109.23447 * 174.74272 * 19 18 17 42 42 H 1.07994 * 120.16494 * 1.04962 * 22 21 20 43 43 H 0.96697 * 113.99955 * 270.00148 * 24 23 22 44 44 H 1.07997 * 119.99775 * 179.55166 * 25 23 22 45 45 H 1.07990 * 120.14708 * 179.97438 * 26 25 23 46 46 H 1.08997 * 109.58327 * 270.11018 * 28 17 2 47 47 H 1.09002 * 109.58050 * 30.52535 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 0.8641 0.9408 2.5890 8 6 2.1956 -0.9403 3.6507 9 6 1.2034 -1.9977 4.0611 10 1 0.2994 -2.1415 3.4880 11 6 1.4503 -2.7824 5.1677 12 7 0.5847 -3.7055 5.5256 13 14 3.0143 -2.5342 6.1585 14 1 2.7684 -1.5356 7.2298 15 1 3.4234 -3.8245 6.7691 16 1 4.0943 -2.0450 5.2644 17 7 2.0196 -0.6925 -1.1994 18 6 1.4379 -2.0274 -1.3071 19 6 2.1400 -2.9157 -2.3116 20 8 1.9893 -2.3967 -3.6391 21 6 2.9017 -1.4558 -4.0027 22 6 3.8602 -1.7510 -4.9615 23 6 4.8005 -0.7932 -5.3096 24 8 5.7413 -1.0765 -6.2484 25 6 4.7829 0.4543 -4.7012 26 6 3.8207 0.7472 -3.7519 27 6 2.8804 -0.2046 -3.4150 28 6 1.7981 0.1182 -2.4018 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.1837 0.6425 2.6226 33 1 1.1219 1.4665 3.5085 34 1 1.0273 1.5996 1.7360 35 1 3.1560 -1.4079 3.4334 36 1 2.3166 -0.2215 4.4611 37 1 0.7581 -4.2572 6.3042 38 1 1.4802 -2.5061 -0.3288 39 1 0.3930 -1.9295 -1.6016 40 1 3.2003 -2.9684 -2.0649 41 1 1.7109 -3.9168 -2.2673 42 1 3.8743 -2.7220 -5.4338 43 1 6.5534 -1.4588 -5.8886 44 1 5.5208 1.1960 -4.9689 45 1 3.8051 1.7169 -3.2768 46 1 0.8208 -0.1147 -2.8244 47 1 1.8438 1.1759 -2.1427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285489091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:04 Heat of formation + Delta-G solvation = -83.246211 kcal Electronic energy + Delta-G solvation = -29802.119066 eV Core-core repulsion = 25757.481416 eV Total energy + Delta-G solvation = -4044.637650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87218 -40.92008 -39.51242 -37.92697 -37.15939 -36.59571 -34.77154 -32.90781 -32.17869 -31.31693 -30.15598 -28.79775 -27.61184 -26.51657 -25.56664 -24.35440 -23.40911 -22.55683 -21.71895 -19.95113 -19.67287 -19.14327 -18.11046 -17.86025 -17.67930 -17.20670 -16.66604 -16.49156 -16.39863 -16.11607 -15.87529 -15.67802 -15.26285 -15.00688 -14.83619 -14.66373 -14.49567 -14.27205 -14.08236 -13.64558 -13.49957 -13.32562 -13.25445 -12.94571 -12.87940 -12.84548 -12.60287 -12.45940 -12.27141 -12.16945 -12.00597 -11.88368 -11.74938 -11.57678 -11.18719 -10.81670 -10.45537 -9.80591 -9.45559 -9.36758 -9.23780 -8.33797 -6.38342 0.13144 0.25618 1.31732 1.36555 1.47121 1.82920 2.14087 2.30860 2.31937 2.75820 3.00710 3.07283 3.34501 3.62099 3.73174 3.89191 3.94755 4.02562 4.08013 4.13697 4.19446 4.22727 4.34377 4.39844 4.45683 4.56578 4.63017 4.66477 4.71069 4.72708 4.79868 4.80915 4.89084 4.94197 4.97592 4.99563 5.20122 5.23634 5.38283 5.46859 5.50745 5.62937 5.64370 5.89701 6.04867 6.25208 6.39623 6.62927 6.74867 6.82215 7.22937 7.48130 8.83197 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018066 B = 0.002891 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.542009 B = 9684.024358 C = 9929.911985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.083 3.917 3 H 0.141 0.859 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.606 5.606 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.532 4.532 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.948 3.052 14 H -0.251 1.251 15 H -0.284 1.284 16 H -0.256 1.256 17 N -0.533 5.533 18 C 0.033 3.967 19 C 0.078 3.922 20 O -0.339 6.339 21 C 0.100 3.900 22 C -0.176 4.176 23 C 0.115 3.885 24 O -0.507 6.507 25 C -0.155 4.155 26 C -0.071 4.071 27 C -0.124 4.124 28 C 0.103 3.897 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.411 0.589 44 H 0.154 0.846 45 H 0.161 0.839 46 H 0.055 0.945 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 14.561 -19.294 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 H 0.159 0.841 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.338 5.338 7 C -0.067 4.067 8 C 0.102 3.898 9 C -0.570 4.570 10 H 0.046 0.954 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.770 3.230 14 H -0.175 1.175 15 H -0.210 1.210 16 H -0.180 1.180 17 N -0.257 5.257 18 C -0.095 4.095 19 C 0.004 3.996 20 O -0.256 6.256 21 C 0.056 3.944 22 C -0.195 4.195 23 C 0.070 3.930 24 O -0.320 6.320 25 C -0.173 4.173 26 C -0.089 4.089 27 C -0.126 4.126 28 C -0.023 4.023 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.270 0.730 44 H 0.172 0.828 45 H 0.179 0.821 46 H 0.074 0.926 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.024 13.999 -19.645 24.863 hybrid contribution -0.159 -1.184 1.194 1.689 sum 5.865 12.815 -18.451 23.218 Atomic orbital electron populations 1.22646 0.93909 1.02641 1.05481 1.21654 0.95135 0.98959 0.87014 0.84120 1.21134 0.80133 0.84509 0.85209 1.90611 1.40049 1.28107 1.86723 1.47897 1.50797 1.29477 1.05641 1.22146 0.94210 0.85962 1.04373 1.19325 0.94185 0.92206 0.84082 1.21546 1.05899 1.18189 1.11409 0.95426 1.25851 1.00213 0.94195 0.98518 1.70051 1.38211 1.22912 1.27544 0.85714 0.79575 0.78447 0.79235 1.17497 1.21000 1.17984 1.60640 1.60844 1.02254 1.01952 1.22097 0.96607 0.90652 1.00155 1.22605 1.00915 0.96950 0.79174 1.86284 1.51252 1.55571 1.32502 1.18579 0.90504 0.88914 0.96431 1.21569 0.95871 1.01099 1.00973 1.18317 0.91456 0.92819 0.90393 1.84759 1.29159 1.84925 1.33157 1.21716 1.01277 0.97027 0.97268 1.21079 0.92202 0.99700 0.95934 1.20436 0.99103 0.93860 0.99177 1.21263 0.95112 0.98734 0.87222 0.88861 0.94352 0.89035 0.92802 0.90226 0.87734 0.96392 0.93320 0.92353 0.91172 0.93881 0.92824 0.86649 0.84950 0.72958 0.82813 0.82143 0.92648 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.25 8.15 71.98 0.59 -3.66 16 2 C 0.08 2.17 1.86 44.17 0.08 2.26 16 3 H 0.14 2.60 6.99 -2.39 -0.02 2.59 16 4 C 0.50 19.43 6.63 87.66 0.58 20.01 16 5 O -0.58 -28.14 14.03 -3.04 -0.04 -28.18 16 6 N -0.61 -23.36 2.86 -851.11 -2.43 -25.79 16 7 C 0.07 1.93 8.85 127.77 1.13 3.06 16 8 C 0.22 10.70 4.27 85.63 0.37 11.07 16 9 C -0.53 -30.89 9.94 25.60 0.25 -30.64 16 10 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 11 C 0.01 0.59 5.47 84.66 0.46 1.05 16 12 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 13 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 14 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.26 -11.51 6.54 99.48 0.65 -10.86 16 17 N -0.53 -14.65 4.03 -884.13 -3.56 -18.21 16 18 C 0.03 1.03 3.80 85.94 0.33 1.35 16 19 C 0.08 2.26 6.64 71.45 0.47 2.74 16 20 O -0.34 -9.67 10.04 -93.72 -0.94 -10.61 16 21 C 0.10 2.61 5.63 22.40 0.13 2.73 16 22 C -0.18 -4.16 9.94 22.49 0.22 -3.94 16 23 C 0.11 2.30 6.70 22.51 0.15 2.45 16 24 O -0.51 -8.47 13.50 -92.40 -1.25 -9.71 16 25 C -0.15 -2.64 9.99 22.42 0.22 -2.42 16 26 C -0.07 -1.23 9.69 22.22 0.22 -1.02 16 27 C -0.12 -2.80 5.47 -19.60 -0.11 -2.91 16 28 C 0.10 2.13 4.50 85.93 0.39 2.52 16 29 H 0.09 1.53 7.54 -2.39 -0.02 1.51 16 30 H 0.04 1.09 6.63 -2.39 -0.02 1.07 16 31 H 0.09 1.90 4.53 -2.39 -0.01 1.89 16 32 H 0.05 1.43 6.95 -2.39 -0.02 1.41 16 33 H 0.08 1.87 7.89 -2.38 -0.02 1.85 16 34 H 0.10 1.73 6.01 -2.39 -0.01 1.72 16 35 H 0.02 0.94 6.48 -2.39 -0.02 0.93 16 36 H 0.05 2.09 7.32 -2.39 -0.02 2.07 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.07 2.77 5.69 -2.39 -0.01 2.75 16 39 H 0.04 1.25 6.74 -2.39 -0.02 1.23 16 40 H 0.05 1.69 7.91 -2.39 -0.02 1.67 16 41 H 0.12 2.95 8.14 -2.38 -0.02 2.94 16 42 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 43 H 0.41 2.99 9.06 -74.06 -0.67 2.31 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.16 1.79 7.99 -2.92 -0.02 1.76 16 46 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 47 H 0.12 1.59 7.33 -2.39 -0.02 1.57 16 Total: -1.00 -82.30 367.52 -0.28 -82.58 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.28 Total: 18.63 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.48 Total: 4.65 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -5.70 Total: -103.38 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -2.23 Total: -48.50 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -82.30 -0.28 -82.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285489091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.670 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds