Wall clock time and date at job start Tue Mar 31 2020 17:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 S 1.65593 * 120.00368 * 165.00081 * 5 4 2 7 7 O 1.42102 * 104.27872 * 181.07364 * 6 5 4 8 8 O 1.42104 * 104.27861 * 308.92900 * 6 5 4 9 9 C 1.81405 * 104.45331 * 64.99971 * 6 5 4 10 10 C 1.52993 * 109.47296 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47372 * 300.00206 * 10 9 6 12 12 C 1.52995 * 109.47355 * 60.00419 * 10 9 6 13 13 C 1.50702 * 109.46751 * 180.02562 * 10 9 6 14 14 H 1.07995 * 120.00279 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99824 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99705 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99862 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47416 * 89.99681 * 17 15 13 19 19 H 1.48502 * 109.46902 * 209.99317 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99138 * 17 15 13 21 21 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 22 22 C 1.47019 * 110.99561 * 58.63770 * 21 2 1 23 23 C 1.53098 * 109.25580 * 177.60383 * 22 21 2 24 24 O 1.43019 * 109.25861 * 56.84896 * 23 22 21 25 25 C 1.43013 * 113.73878 * 301.33287 * 24 23 22 26 26 C 1.47010 * 111.00208 * 295.00431 * 21 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 32 32 H 0.96998 * 120.00010 * 345.00064 * 5 4 2 33 33 H 1.08997 * 109.46693 * 300.00389 * 9 6 5 34 34 H 1.09003 * 109.46567 * 60.00114 * 9 6 5 35 35 H 1.08999 * 109.46831 * 59.99741 * 11 10 9 36 36 H 1.08998 * 109.47316 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46811 * 299.99927 * 11 10 9 38 38 H 1.08997 * 109.47285 * 59.99261 * 12 10 9 39 39 H 1.09002 * 109.47555 * 179.97438 * 12 10 9 40 40 H 1.09012 * 109.47106 * 300.00064 * 12 10 9 41 41 H 0.97001 * 119.99628 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.50883 * 297.53724 * 22 21 2 43 43 H 1.08999 * 109.50389 * 57.67573 * 22 21 2 44 44 H 1.09002 * 109.51098 * 296.91327 * 23 22 21 45 45 H 1.09004 * 109.50595 * 176.78460 * 23 22 21 46 46 H 1.09002 * 109.50215 * 298.73054 * 25 24 23 47 47 H 1.08998 * 109.54219 * 178.62493 * 25 24 23 48 48 H 1.09001 * 109.50408 * 302.31975 * 26 21 2 49 49 H 1.08998 * 109.51150 * 62.45669 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 16 4.2965 -1.8689 -2.2010 7 8 5.6652 -1.7218 -1.8484 8 8 3.6241 -3.1085 -2.0263 9 6 3.9928 -1.2088 -3.8632 10 6 4.6855 -2.0966 -4.8989 11 6 6.1909 -2.1191 -4.6262 12 6 4.1290 -3.5187 -4.8055 13 6 4.4337 -1.5478 -6.2797 14 1 3.8388 -0.6554 -6.4059 15 6 4.9621 -2.1857 -7.3820 16 7 5.6861 -3.2728 -7.2283 17 14 4.6506 -1.5050 -9.0934 18 1 5.7241 -0.5415 -9.4460 19 1 4.6433 -2.6191 -10.0754 20 1 3.3366 -0.8136 -9.1195 21 7 2.0196 -0.6924 1.1995 22 6 1.5217 -2.0748 1.2499 23 6 2.1026 -2.7761 2.4806 24 8 1.7582 -2.0334 3.6533 25 6 2.2279 -0.6827 3.6380 26 6 1.6483 0.0398 2.4190 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1584 -2.1369 32 1 4.0003 -0.2853 -0.5597 33 1 2.9204 -1.1932 -4.0575 34 1 4.3889 -0.1955 -3.9296 35 1 6.3733 -2.5158 -3.6275 36 1 6.6845 -2.7513 -5.3644 37 1 6.5874 -1.1059 -4.6928 38 1 3.0566 -3.5027 -4.9997 39 1 4.6222 -4.1511 -5.5437 40 1 4.3114 -3.9154 -3.8067 41 1 6.0581 -3.7214 -8.0037 42 1 0.4337 -2.0676 1.3148 43 1 1.8299 -2.6057 0.3492 44 1 3.1875 -2.8309 2.3902 45 1 1.6916 -3.7830 2.5536 46 1 3.3164 -0.6767 3.5812 47 1 1.9081 -0.1752 4.5480 48 1 2.0489 1.0524 2.3717 49 1 0.5623 0.0808 2.5026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331287038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:09 Heat of formation + Delta-G solvation = -111.470986 kcal Electronic energy + Delta-G solvation = -29009.534467 eV Core-core repulsion = 25099.116850 eV Total energy + Delta-G solvation = -3910.417616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.12649 -37.39788 -36.45159 -36.25849 -35.25041 -34.26537 -31.66557 -31.40438 -31.10317 -26.88106 -26.59817 -25.82179 -25.70651 -25.21464 -24.21160 -21.86488 -19.85966 -19.50540 -18.66482 -17.29817 -16.98441 -16.55187 -15.96884 -15.87768 -15.49838 -15.33570 -15.13865 -14.95803 -14.72340 -14.51782 -14.41178 -13.48981 -13.33157 -12.98967 -12.92755 -12.69571 -12.50009 -12.44236 -12.29971 -12.04802 -11.88391 -11.54073 -11.45071 -11.38449 -11.07733 -11.06600 -10.91758 -10.83994 -10.69505 -10.67579 -10.37094 -10.26577 -10.10207 -9.89015 -9.64798 -9.60195 -9.17480 -8.65716 -8.57268 -8.40313 -6.03642 -4.15674 0.92155 3.24340 3.25114 3.32464 3.34196 3.50775 3.68800 4.30440 4.36947 4.47412 4.61535 4.70028 4.78898 4.86706 4.92073 4.97279 4.99447 5.10072 5.21651 5.26671 5.30385 5.35758 5.40891 5.46583 5.52730 5.64927 5.67619 5.72217 5.74157 5.79579 5.88865 6.09486 6.38933 6.70591 6.71556 6.72832 6.80544 6.91884 6.93256 7.04269 7.28603 7.32613 7.51239 7.67648 7.98637 8.09979 8.33273 8.82852 9.49720 10.97618 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.002980 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.500414 B = 9394.142143 C = 9851.890164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.075 3.925 3 H 0.092 0.908 4 C 0.123 3.877 5 N -1.119 6.119 6 S 2.596 3.404 7 O -0.966 6.966 8 O -0.967 6.967 9 C -0.585 4.585 10 C 0.082 3.918 11 C -0.164 4.164 12 C -0.163 4.163 13 C -0.503 4.503 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 N -0.525 5.525 22 C 0.007 3.993 23 C 0.063 3.937 24 O -0.388 6.388 25 C 0.063 3.937 26 C 0.015 3.985 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.028 0.972 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 7.186 17.344 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.035 4.035 3 H 0.110 0.890 4 C -0.005 4.005 5 N -0.876 5.876 6 S 2.694 3.306 7 O -0.956 6.956 8 O -0.957 6.957 9 C -0.718 4.718 10 C 0.080 3.920 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.542 4.542 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.249 5.249 22 C -0.120 4.120 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.014 4.014 26 C -0.113 4.113 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.956 6.063 17.556 20.620 hybrid contribution -1.063 1.378 -1.398 2.232 sum -10.019 7.441 16.157 20.416 Atomic orbital electron populations 1.22442 0.96581 1.02955 1.02829 1.21931 0.93198 0.98577 0.89754 0.88963 1.21326 0.80758 1.01347 0.97045 1.55578 1.14361 1.63053 1.54639 1.05484 0.73675 0.74464 0.76982 1.93551 1.32996 1.86278 1.82773 1.93522 1.75584 1.41098 1.85468 1.30544 1.10039 1.11827 1.19384 1.17915 0.91383 0.90516 0.92199 1.22272 0.98279 1.01465 1.00112 1.22266 1.00045 0.99139 1.00614 1.20955 1.32720 1.11102 0.89420 0.92352 1.24943 0.94876 0.94854 0.99084 1.69806 1.34080 1.18237 1.30019 0.86541 0.78580 0.78591 0.83944 1.20657 1.21135 1.19981 1.62366 1.59020 1.02102 1.01459 1.22939 0.98355 0.90029 1.00727 1.22696 1.00231 0.94908 0.83584 1.87968 1.78598 1.23608 1.40499 1.22645 0.98909 0.82604 0.97250 1.22813 0.99287 0.98480 0.90729 0.91747 0.91276 0.92044 0.90389 0.91254 0.75049 0.86670 0.86370 0.95355 0.88686 0.94515 0.94575 0.88714 0.95266 0.92752 0.93477 0.88300 0.92025 0.88349 0.92217 0.88713 0.89714 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.49 37.16 0.32 -1.10 16 2 C 0.08 0.66 2.48 -67.72 -0.17 0.49 16 3 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 4 C 0.12 1.34 5.16 -4.05 -0.02 1.31 16 5 N -1.12 -14.68 5.63 -10.62 -0.06 -14.74 16 6 S 2.60 46.97 4.49 -107.50 -0.48 46.49 16 7 O -0.97 -20.26 15.70 -57.54 -0.90 -21.16 16 8 O -0.97 -19.60 15.12 -57.54 -0.87 -20.47 16 9 C -0.58 -11.19 5.01 37.15 0.19 -11.00 16 10 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 11 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 12 C -0.16 -3.98 7.78 37.15 0.29 -3.69 16 13 C -0.50 -13.14 8.01 -34.44 -0.28 -13.42 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 16 N -0.88 -24.09 9.35 55.43 0.52 -23.57 16 17 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 N -0.52 -5.11 4.38 -226.34 -0.99 -6.10 16 22 C 0.01 0.08 4.86 -3.71 -0.02 0.06 16 23 C 0.06 0.66 7.01 37.21 0.26 0.92 16 24 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 25 C 0.06 0.54 7.01 37.21 0.26 0.80 16 26 C 0.02 0.12 5.31 -3.71 -0.02 0.10 16 27 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.43 6.58 -51.93 -0.34 0.08 16 30 H 0.08 0.91 6.20 -51.93 -0.32 0.59 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.42 4.96 8.54 -34.46 -0.29 4.66 16 33 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 35 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 36 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 40 H 0.03 0.68 5.46 -51.92 -0.28 0.39 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.05 0.46 6.42 -51.93 -0.33 0.13 16 43 H 0.10 1.19 6.33 -51.93 -0.33 0.86 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 49 H 0.05 0.36 6.56 -51.93 -0.34 0.02 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -31.98 374.77 -9.72 -41.70 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.11 Total: 7.09 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 0.93 Total: -25.76 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.53 Total: -44.41 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.15 Total: -46.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 46.97 SS G_CDS: -0.48 Total: 46.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.98 -9.72 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331287038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.772 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds