Wall clock time and date at job start Tue Mar 31 2020 17:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 S 1.65593 * 120.00368 * 165.00081 * 5 4 2 7 7 O 1.42102 * 104.27872 * 181.07364 * 6 5 4 8 8 O 1.42104 * 104.27861 * 308.92900 * 6 5 4 9 9 C 1.81405 * 104.45331 * 64.99971 * 6 5 4 10 10 C 1.52993 * 109.47296 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.47372 * 300.00206 * 10 9 6 12 12 C 1.52995 * 109.47355 * 60.00419 * 10 9 6 13 13 C 1.50702 * 109.46751 * 180.02562 * 10 9 6 14 14 H 1.07995 * 120.00279 * 359.97438 * 13 10 9 15 15 C 1.37883 * 119.99824 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99705 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99862 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47416 * 89.99681 * 17 15 13 19 19 H 1.48502 * 109.46902 * 209.99317 * 17 15 13 20 20 H 1.48499 * 109.46980 * 329.99138 * 17 15 13 21 21 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 22 22 C 1.47019 * 110.99561 * 58.63770 * 21 2 1 23 23 C 1.53098 * 109.25580 * 177.60383 * 22 21 2 24 24 O 1.43019 * 109.25861 * 56.84896 * 23 22 21 25 25 C 1.43013 * 113.73878 * 301.33287 * 24 23 22 26 26 C 1.47010 * 111.00208 * 295.00431 * 21 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 32 32 H 0.96998 * 120.00010 * 345.00064 * 5 4 2 33 33 H 1.08997 * 109.46693 * 300.00389 * 9 6 5 34 34 H 1.09003 * 109.46567 * 60.00114 * 9 6 5 35 35 H 1.08999 * 109.46831 * 59.99741 * 11 10 9 36 36 H 1.08998 * 109.47316 * 180.02562 * 11 10 9 37 37 H 1.09003 * 109.46811 * 299.99927 * 11 10 9 38 38 H 1.08997 * 109.47285 * 59.99261 * 12 10 9 39 39 H 1.09002 * 109.47555 * 179.97438 * 12 10 9 40 40 H 1.09012 * 109.47106 * 300.00064 * 12 10 9 41 41 H 0.97001 * 119.99628 * 180.02562 * 16 15 13 42 42 H 1.08994 * 109.50883 * 297.53724 * 22 21 2 43 43 H 1.08999 * 109.50389 * 57.67573 * 22 21 2 44 44 H 1.09002 * 109.51098 * 296.91327 * 23 22 21 45 45 H 1.09004 * 109.50595 * 176.78460 * 23 22 21 46 46 H 1.09002 * 109.50215 * 298.73054 * 25 24 23 47 47 H 1.08998 * 109.54219 * 178.62493 * 25 24 23 48 48 H 1.09001 * 109.50408 * 302.31975 * 26 21 2 49 49 H 1.08998 * 109.51150 * 62.45669 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 16 4.2965 -1.8689 -2.2010 7 8 5.6652 -1.7218 -1.8484 8 8 3.6241 -3.1085 -2.0263 9 6 3.9928 -1.2088 -3.8632 10 6 4.6855 -2.0966 -4.8989 11 6 6.1909 -2.1191 -4.6262 12 6 4.1290 -3.5187 -4.8055 13 6 4.4337 -1.5478 -6.2797 14 1 3.8388 -0.6554 -6.4059 15 6 4.9621 -2.1857 -7.3820 16 7 5.6861 -3.2728 -7.2283 17 14 4.6506 -1.5050 -9.0934 18 1 5.7241 -0.5415 -9.4460 19 1 4.6433 -2.6191 -10.0754 20 1 3.3366 -0.8136 -9.1195 21 7 2.0196 -0.6924 1.1995 22 6 1.5217 -2.0748 1.2499 23 6 2.1026 -2.7761 2.4806 24 8 1.7582 -2.0334 3.6533 25 6 2.2279 -0.6827 3.6380 26 6 1.6483 0.0398 2.4190 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 1.7517 -0.1584 -2.1369 32 1 4.0003 -0.2853 -0.5597 33 1 2.9204 -1.1932 -4.0575 34 1 4.3889 -0.1955 -3.9296 35 1 6.3733 -2.5158 -3.6275 36 1 6.6845 -2.7513 -5.3644 37 1 6.5874 -1.1059 -4.6928 38 1 3.0566 -3.5027 -4.9997 39 1 4.6222 -4.1511 -5.5437 40 1 4.3114 -3.9154 -3.8067 41 1 6.0581 -3.7214 -8.0037 42 1 0.4337 -2.0676 1.3148 43 1 1.8299 -2.6057 0.3492 44 1 3.1875 -2.8309 2.3902 45 1 1.6916 -3.7830 2.5536 46 1 3.3164 -0.6767 3.5812 47 1 1.9081 -0.1752 4.5480 48 1 2.0489 1.0524 2.3717 49 1 0.5623 0.0808 2.5026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331287038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:08 Heat of formation + Delta-G solvation = -135.822574 kcal Electronic energy + Delta-G solvation = -29010.590431 eV Core-core repulsion = 25099.116850 eV Total energy + Delta-G solvation = -3911.473581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.85807 -38.26397 -38.09922 -37.93459 -36.81720 -35.23432 -33.61903 -32.12277 -31.85981 -28.29978 -27.67716 -27.53439 -27.25017 -26.65020 -24.95000 -22.61045 -21.34896 -20.54565 -20.09818 -18.67157 -17.96665 -17.70884 -17.45419 -16.91514 -16.84400 -16.59227 -16.19820 -16.00060 -15.86261 -15.54818 -15.20707 -14.99786 -14.66274 -14.41261 -14.15886 -14.00988 -13.77953 -13.63501 -13.20321 -13.15385 -12.98391 -12.92030 -12.87460 -12.75847 -12.56912 -12.47354 -12.40170 -12.17071 -12.15247 -12.11460 -11.91560 -11.59084 -11.54786 -11.41587 -11.33728 -10.66318 -10.65247 -10.40792 -10.19351 -9.27393 -8.02110 -6.20852 -0.53214 1.44503 1.46324 1.54847 2.00121 2.44887 2.76361 2.92890 2.98557 3.20237 3.39435 3.69433 3.93343 3.98399 4.04077 4.16435 4.19643 4.21035 4.28804 4.33203 4.40948 4.51326 4.60558 4.63925 4.65158 4.71098 4.76722 4.85844 4.87994 4.88647 4.93616 5.01135 5.03313 5.06085 5.09131 5.11286 5.33616 5.40399 5.52333 5.65609 5.98117 5.98708 6.05735 6.13083 6.19103 6.28802 6.35454 6.84370 7.47545 8.97657 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.002980 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.500414 B = 9394.142143 C = 9851.890164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.110 0.890 4 C 0.110 3.890 5 N -1.100 6.100 6 S 2.616 3.384 7 O -0.997 6.997 8 O -0.991 6.991 9 C -0.588 4.588 10 C 0.069 3.931 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.517 4.517 14 H 0.064 0.936 15 C 0.017 3.983 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.266 1.266 21 N -0.538 5.538 22 C 0.011 3.989 23 C 0.061 3.939 24 O -0.403 6.403 25 C 0.056 3.944 26 C 0.018 3.982 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.424 0.576 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.106 0.894 46 H 0.054 0.946 47 H 0.116 0.884 48 H 0.103 0.897 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 9.458 17.946 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.128 0.872 4 C -0.016 4.016 5 N -0.862 5.862 6 S 2.713 3.287 7 O -0.988 6.988 8 O -0.981 6.981 9 C -0.720 4.720 10 C 0.067 3.933 11 C -0.218 4.218 12 C -0.216 4.216 13 C -0.557 4.557 14 H 0.082 0.918 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.190 1.190 21 N -0.263 5.263 22 C -0.117 4.117 23 C -0.016 4.016 24 O -0.322 6.322 25 C -0.020 4.020 26 C -0.110 4.110 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.260 0.740 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.072 0.928 47 H 0.134 0.866 48 H 0.122 0.878 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.595 8.348 18.158 22.620 hybrid contribution -0.572 0.686 -1.507 1.752 sum -11.167 9.034 16.651 21.991 Atomic orbital electron populations 1.22397 0.95342 1.02729 1.03852 1.21960 0.94061 0.98808 0.88239 0.87197 1.21668 0.78845 1.01710 0.99404 1.55085 1.15448 1.62290 1.53365 1.04607 0.72898 0.74405 0.76827 1.93500 1.35301 1.86811 1.83148 1.93489 1.75882 1.43019 1.85724 1.30471 1.11023 1.11707 1.18818 1.17908 0.91182 0.91013 0.93194 1.22210 0.99110 1.01012 0.99470 1.22189 1.00021 0.99427 0.99993 1.21326 1.32523 1.11239 0.90564 0.91755 1.25693 0.94865 0.95173 1.02545 1.69954 1.34847 1.19245 1.30686 0.85614 0.78709 0.77822 0.79818 1.20472 1.21371 1.18998 1.62368 1.59501 1.01887 1.02538 1.22826 0.98631 0.90635 0.99642 1.22702 0.99496 0.95551 0.83845 1.87946 1.78805 1.24876 1.40592 1.22854 0.98724 0.81761 0.98683 1.22849 0.99594 0.98959 0.89564 0.92611 0.90123 0.91148 0.91395 0.88992 0.73952 0.84480 0.84556 0.95008 0.91158 0.94212 0.94051 0.91259 0.94849 0.92983 0.92880 0.90167 0.93312 0.87618 0.92783 0.86596 0.87839 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 8.49 71.98 0.61 -1.59 16 2 C 0.08 1.16 2.48 44.91 0.11 1.27 16 3 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 4 C 0.11 2.13 5.16 86.38 0.45 2.57 16 5 N -1.10 -26.76 5.63 -187.50 -1.06 -27.81 16 6 S 2.62 92.15 4.49 -56.49 -0.25 91.90 16 7 O -1.00 -41.41 15.70 -127.65 -2.00 -43.41 16 8 O -0.99 -39.90 15.12 -127.65 -1.93 -41.83 16 9 C -0.59 -21.50 5.01 71.98 0.36 -21.14 16 10 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 11 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 12 C -0.16 -7.81 7.78 71.98 0.56 -7.25 16 13 C -0.52 -26.67 8.01 25.60 0.21 -26.46 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.02 0.87 5.15 84.66 0.44 1.31 16 16 N -0.91 -50.34 9.35 21.45 0.20 -50.14 16 17 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 N -0.54 -9.37 4.38 -870.00 -3.81 -13.18 16 22 C 0.01 0.22 4.86 86.31 0.42 0.64 16 23 C 0.06 1.27 7.01 72.01 0.50 1.77 16 24 O -0.40 -8.48 10.83 -148.98 -1.61 -10.09 16 25 C 0.06 0.86 7.01 72.01 0.50 1.37 16 26 C 0.02 0.24 5.31 86.32 0.46 0.70 16 27 H 0.05 0.78 6.43 -2.39 -0.02 0.76 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.74 6.58 -2.38 -0.02 0.73 16 30 H 0.07 1.49 6.20 -2.39 -0.01 1.47 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.42 9.20 8.54 -96.75 -0.83 8.37 16 33 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 34 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 35 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 36 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 40 H 0.03 1.57 5.46 -2.38 -0.01 1.56 16 41 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.05 0.98 6.42 -2.39 -0.02 0.97 16 43 H 0.08 1.91 6.33 -2.39 -0.02 1.90 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 48 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 49 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 Total: -1.00 -68.56 374.77 -3.17 -71.72 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.12 Total: 29.98 kcal Atomic # 6 Polarization: -56.12 SS G_CDS: 5.15 Total: -50.98 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -4.66 Total: -91.14 kcal Atomic # 8 Polarization: -89.79 SS G_CDS: -5.55 Total: -95.33 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 92.15 SS G_CDS: -0.25 Total: 91.90 kcal Total: -68.56 -3.17 -71.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331287038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.098 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds