Wall clock time and date at job start Tue Mar 31 2020 17:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47297 * 2 1 4 4 C 1.52995 * 109.47344 * 120.00976 * 2 1 3 5 5 N 1.46493 * 109.47299 * 65.80135 * 4 2 1 6 6 S 1.65604 * 120.00056 * 165.00579 * 5 4 2 7 7 O 1.42101 * 104.27775 * 181.06805 * 6 5 4 8 8 O 1.42099 * 104.27404 * 308.92550 * 6 5 4 9 9 C 1.81394 * 104.45212 * 64.99608 * 6 5 4 10 10 C 1.53001 * 109.47507 * 180.02562 * 9 6 5 11 11 C 1.53005 * 109.46776 * 299.99895 * 10 9 6 12 12 C 1.53000 * 109.47018 * 59.99403 * 10 9 6 13 13 C 1.50694 * 109.47295 * 180.02562 * 10 9 6 14 14 H 1.07997 * 120.00140 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99641 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00403 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99433 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47556 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47076 * 119.99775 * 17 15 13 20 20 H 1.48502 * 109.46527 * 239.99101 * 17 15 13 21 21 N 1.46906 * 109.46618 * 240.00858 * 2 1 3 22 22 C 1.47022 * 110.99797 * 182.32993 * 21 2 1 23 23 C 1.53091 * 109.25372 * 177.60609 * 22 21 2 24 24 O 1.43008 * 109.26137 * 56.85183 * 23 22 21 25 25 C 1.43017 * 113.73719 * 301.32352 * 24 23 22 26 26 C 1.47012 * 111.00028 * 58.69645 * 21 2 1 27 27 H 1.09002 * 109.46643 * 299.99565 * 1 2 3 28 28 H 1.09005 * 109.47372 * 59.99338 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46831 * 305.79539 * 4 2 1 31 31 H 1.09000 * 109.47127 * 185.79903 * 4 2 1 32 32 H 0.97005 * 120.00425 * 344.99769 * 5 4 2 33 33 H 1.09005 * 109.47449 * 300.00166 * 9 6 5 34 34 H 1.08998 * 109.47264 * 59.99692 * 9 6 5 35 35 H 1.09007 * 109.46811 * 59.99913 * 11 10 9 36 36 H 1.09001 * 109.47216 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.46781 * 299.99904 * 11 10 9 38 38 H 1.09003 * 109.47037 * 60.00591 * 12 10 9 39 39 H 1.09002 * 109.46748 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47518 * 300.00815 * 12 10 9 41 41 H 0.96995 * 120.00563 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.50275 * 297.54334 * 22 21 2 43 43 H 1.08995 * 109.50315 * 57.67243 * 22 21 2 44 44 H 1.08999 * 109.50855 * 296.90929 * 23 22 21 45 45 H 1.08999 * 109.53811 * 176.80416 * 23 22 21 46 46 H 1.08999 * 109.50957 * 298.73705 * 25 24 23 47 47 H 1.09001 * 109.53986 * 178.62962 * 25 24 23 48 48 H 1.09002 * 109.50726 * 302.31937 * 26 21 2 49 49 H 1.08999 * 109.51112 * 62.41284 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6691 -2.1370 1.1811 6 16 2.3924 -3.2319 2.1913 7 8 1.8140 -4.4783 1.8289 8 8 3.7837 -2.9944 2.0268 9 6 1.8546 -2.7396 3.8522 10 6 2.4647 -3.6865 4.8876 11 6 2.0022 -5.1174 4.6050 12 6 3.9909 -3.6181 4.8044 13 6 2.0173 -3.2778 6.2673 14 1 1.3636 -2.4275 6.3933 15 6 2.4436 -3.9890 7.3690 16 7 3.2400 -5.0242 7.2157 17 14 1.8896 -3.4819 9.0794 18 1 1.0039 -2.2940 8.9811 19 1 1.1476 -4.6021 9.7118 20 1 3.0774 -3.1464 9.9051 21 7 2.0196 -0.6924 -1.1996 22 6 3.4882 -0.7605 -1.2061 23 6 3.9519 -1.5399 -2.4395 24 8 3.4339 -0.9130 -3.6159 25 6 2.0064 -0.8304 -3.6431 26 6 1.5228 -0.0438 -2.4218 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.5944 -0.2711 2.1360 31 1 3.1251 -0.6324 1.3025 32 1 0.9997 -2.4330 0.5445 33 1 2.1844 -1.7203 4.0537 34 1 0.7673 -2.7879 3.9113 35 1 2.3254 -5.4132 3.6068 36 1 2.4371 -5.7921 5.3423 37 1 0.9149 -5.1660 4.6642 38 1 4.3204 -2.5988 5.0057 39 1 4.4255 -4.2931 5.5417 40 1 4.3140 -3.9139 3.8063 41 1 3.5395 -5.5247 7.9907 42 1 3.8992 0.2485 -1.2372 43 1 3.8329 -1.2670 -0.3046 44 1 3.5853 -2.5647 -2.3816 45 1 5.0412 -1.5447 -2.4793 46 1 1.5831 -1.8346 -3.6202 47 1 1.6879 -0.3219 -4.5531 48 1 0.4330 -0.0272 -2.4079 49 1 1.9018 0.9769 -2.4721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331287039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:12 Heat of formation + Delta-G solvation = -110.787240 kcal Electronic energy + Delta-G solvation = -29078.298862 eV Core-core repulsion = 25167.910895 eV Total energy + Delta-G solvation = -3910.387967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.02259 -37.43331 -36.46013 -36.26220 -35.25576 -34.23184 -31.67618 -31.62682 -30.86648 -26.97246 -26.61351 -26.16601 -25.71129 -25.22665 -23.74445 -21.39699 -20.23061 -19.60054 -18.73153 -17.35214 -17.18519 -16.33376 -16.02285 -15.80173 -15.43124 -15.27251 -15.13991 -14.99992 -14.70569 -14.54877 -14.16387 -13.89222 -13.38747 -13.06878 -12.95773 -12.51090 -12.43396 -12.22543 -12.10819 -12.04131 -11.88520 -11.57844 -11.53364 -11.39231 -11.09367 -11.07740 -10.90630 -10.78892 -10.70563 -10.68299 -10.35239 -10.27218 -10.10614 -9.87322 -9.65279 -9.60471 -9.17837 -8.65574 -8.61774 -8.41025 -6.04048 -4.16004 0.91775 3.23899 3.24028 3.32568 3.34934 3.48961 3.68609 4.30840 4.37202 4.46015 4.61723 4.71818 4.79182 4.80275 4.93388 5.03001 5.07071 5.08970 5.21382 5.26609 5.36767 5.42198 5.47451 5.49189 5.54890 5.63999 5.66821 5.72117 5.75430 5.79822 5.95355 6.07716 6.38642 6.70443 6.71717 6.73797 6.80118 6.91425 6.93669 7.03832 7.28500 7.32287 7.50891 7.67463 7.98212 8.09741 8.32917 8.82805 9.49488 10.97256 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.003016 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.620799 B = 9280.849288 C = 9726.890459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 H 0.054 0.946 4 C 0.121 3.879 5 N -1.118 6.118 6 S 2.596 3.404 7 O -0.966 6.966 8 O -0.967 6.967 9 C -0.584 4.584 10 C 0.082 3.918 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.502 4.502 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.883 5.883 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 N -0.527 5.527 22 C 0.010 3.990 23 C 0.063 3.937 24 O -0.388 6.388 25 C 0.063 3.937 26 C 0.014 3.986 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.416 0.584 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.028 0.972 36 H 0.094 0.906 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.042 0.958 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 11.210 -17.276 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 H 0.072 0.928 4 C -0.006 4.006 5 N -0.876 5.876 6 S 2.694 3.306 7 O -0.956 6.956 8 O -0.957 6.957 9 C -0.718 4.718 10 C 0.080 3.920 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.541 4.541 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.521 5.521 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.253 5.253 22 C -0.118 4.118 23 C -0.014 4.014 24 O -0.307 6.307 25 C -0.014 4.014 26 C -0.114 4.114 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.119 0.881 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.423 10.030 -17.498 20.457 hybrid contribution -0.868 1.420 1.410 2.181 sum -4.291 11.450 -16.088 20.208 Atomic orbital electron populations 1.21918 0.93619 1.03108 1.02024 1.21834 0.96302 0.95577 0.89678 0.92800 1.21322 1.00558 0.81605 0.97126 1.55607 1.59043 1.18721 1.54257 1.05490 0.74659 0.73494 0.76995 1.93551 1.78971 1.40519 1.82555 1.93521 1.31294 1.85290 1.85607 1.30541 1.11042 1.10839 1.19341 1.17921 0.92181 0.89714 0.92224 1.22271 1.00035 0.99732 1.00079 1.22266 0.97455 1.01711 1.00634 1.20991 1.29737 1.13915 0.89476 0.92297 1.24943 0.94861 0.94879 0.99089 1.69807 1.33724 1.18674 1.29930 0.86490 0.78471 0.78497 0.84236 1.19859 1.20953 1.20967 1.62171 1.09351 1.52466 1.01341 1.22918 0.87660 1.00269 1.00923 1.22684 0.99137 0.96137 0.83396 1.87969 1.20600 1.80888 1.41244 1.22647 0.81411 1.00142 0.97185 1.22856 1.01290 0.96531 0.90682 0.91523 0.92378 0.91280 0.91149 0.90390 0.74966 0.86662 0.86364 0.95369 0.88693 0.94507 0.94571 0.88719 0.95276 0.92803 0.93982 0.88063 0.92002 0.88290 0.92206 0.88718 0.89257 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.80 37.16 0.33 -0.80 16 2 C 0.08 0.68 2.34 -67.71 -0.16 0.52 16 3 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.12 1.32 5.11 -4.05 -0.02 1.30 16 5 N -1.12 -14.55 5.50 -10.62 -0.06 -14.61 16 6 S 2.60 46.63 4.49 -107.50 -0.48 46.14 16 7 O -0.97 -20.14 15.70 -57.54 -0.90 -21.05 16 8 O -0.97 -19.47 15.12 -57.54 -0.87 -20.34 16 9 C -0.58 -11.12 5.01 37.16 0.19 -10.93 16 10 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 11 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 12 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 13 C -0.50 -13.09 8.01 -34.44 -0.28 -13.37 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 16 N -0.88 -24.05 9.35 55.43 0.52 -23.53 16 17 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 N -0.53 -5.21 4.22 -226.33 -0.95 -6.16 16 22 C 0.01 0.11 5.28 -3.71 -0.02 0.09 16 23 C 0.06 0.68 7.01 37.20 0.26 0.94 16 24 O -0.39 -4.33 10.83 -35.23 -0.38 -4.72 16 25 C 0.06 0.55 7.01 37.21 0.26 0.81 16 26 C 0.01 0.12 5.31 -3.71 -0.02 0.10 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.38 6.33 -51.93 -0.33 0.05 16 29 H 0.07 0.57 6.95 -51.93 -0.36 0.20 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.90 6.20 -51.93 -0.32 0.58 16 32 H 0.42 4.97 7.33 -34.47 -0.25 4.72 16 33 H 0.11 1.96 8.14 -51.92 -0.42 1.53 16 34 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 35 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 36 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 40 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 41 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 1.24 6.27 -51.93 -0.33 0.92 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.61 6.16 -51.93 -0.32 0.29 16 49 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -31.90 375.37 -9.70 -41.59 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.14 Total: 6.79 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 0.95 Total: -25.29 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.49 Total: -44.31 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.15 Total: -46.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 46.63 SS G_CDS: -0.48 Total: 46.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.90 -9.70 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331287039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.196 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds