Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47297 * 2 1 4 4 C 1.52995 * 109.47344 * 120.00976 * 2 1 3 5 5 N 1.46493 * 109.47299 * 65.80135 * 4 2 1 6 6 S 1.65604 * 120.00056 * 165.00579 * 5 4 2 7 7 O 1.42101 * 104.27775 * 181.06805 * 6 5 4 8 8 O 1.42099 * 104.27404 * 308.92550 * 6 5 4 9 9 C 1.81394 * 104.45212 * 64.99608 * 6 5 4 10 10 C 1.53001 * 109.47507 * 180.02562 * 9 6 5 11 11 C 1.53005 * 109.46776 * 299.99895 * 10 9 6 12 12 C 1.53000 * 109.47018 * 59.99403 * 10 9 6 13 13 C 1.50694 * 109.47295 * 180.02562 * 10 9 6 14 14 H 1.07997 * 120.00140 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99641 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00403 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99433 * 179.97438 * 15 13 10 18 18 H 1.48496 * 109.47556 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47076 * 119.99775 * 17 15 13 20 20 H 1.48502 * 109.46527 * 239.99101 * 17 15 13 21 21 N 1.46906 * 109.46618 * 240.00858 * 2 1 3 22 22 C 1.47022 * 110.99797 * 182.32993 * 21 2 1 23 23 C 1.53091 * 109.25372 * 177.60609 * 22 21 2 24 24 O 1.43008 * 109.26137 * 56.85183 * 23 22 21 25 25 C 1.43017 * 113.73719 * 301.32352 * 24 23 22 26 26 C 1.47012 * 111.00028 * 58.69645 * 21 2 1 27 27 H 1.09002 * 109.46643 * 299.99565 * 1 2 3 28 28 H 1.09005 * 109.47372 * 59.99338 * 1 2 3 29 29 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46831 * 305.79539 * 4 2 1 31 31 H 1.09000 * 109.47127 * 185.79903 * 4 2 1 32 32 H 0.97005 * 120.00425 * 344.99769 * 5 4 2 33 33 H 1.09005 * 109.47449 * 300.00166 * 9 6 5 34 34 H 1.08998 * 109.47264 * 59.99692 * 9 6 5 35 35 H 1.09007 * 109.46811 * 59.99913 * 11 10 9 36 36 H 1.09001 * 109.47216 * 179.97438 * 11 10 9 37 37 H 1.08998 * 109.46781 * 299.99904 * 11 10 9 38 38 H 1.09003 * 109.47037 * 60.00591 * 12 10 9 39 39 H 1.09002 * 109.46748 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47518 * 300.00815 * 12 10 9 41 41 H 0.96995 * 120.00563 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.50275 * 297.54334 * 22 21 2 43 43 H 1.08995 * 109.50315 * 57.67243 * 22 21 2 44 44 H 1.08999 * 109.50855 * 296.90929 * 23 22 21 45 45 H 1.08999 * 109.53811 * 176.80416 * 23 22 21 46 46 H 1.08999 * 109.50957 * 298.73705 * 25 24 23 47 47 H 1.09001 * 109.53986 * 178.62962 * 25 24 23 48 48 H 1.09002 * 109.50726 * 302.31937 * 26 21 2 49 49 H 1.08999 * 109.51112 * 62.41284 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6691 -2.1370 1.1811 6 16 2.3924 -3.2319 2.1913 7 8 1.8140 -4.4783 1.8289 8 8 3.7837 -2.9944 2.0268 9 6 1.8546 -2.7396 3.8522 10 6 2.4647 -3.6865 4.8876 11 6 2.0022 -5.1174 4.6050 12 6 3.9909 -3.6181 4.8044 13 6 2.0173 -3.2778 6.2673 14 1 1.3636 -2.4275 6.3933 15 6 2.4436 -3.9890 7.3690 16 7 3.2400 -5.0242 7.2157 17 14 1.8896 -3.4819 9.0794 18 1 1.0039 -2.2940 8.9811 19 1 1.1476 -4.6021 9.7118 20 1 3.0774 -3.1464 9.9051 21 7 2.0196 -0.6924 -1.1996 22 6 3.4882 -0.7605 -1.2061 23 6 3.9519 -1.5399 -2.4395 24 8 3.4339 -0.9130 -3.6159 25 6 2.0064 -0.8304 -3.6431 26 6 1.5228 -0.0438 -2.4218 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.5944 -0.2711 2.1360 31 1 3.1251 -0.6324 1.3025 32 1 0.9997 -2.4330 0.5445 33 1 2.1844 -1.7203 4.0537 34 1 0.7673 -2.7879 3.9113 35 1 2.3254 -5.4132 3.6068 36 1 2.4371 -5.7921 5.3423 37 1 0.9149 -5.1660 4.6642 38 1 4.3204 -2.5988 5.0057 39 1 4.4255 -4.2931 5.5417 40 1 4.3140 -3.9139 3.8063 41 1 3.5395 -5.5247 7.9907 42 1 3.8992 0.2485 -1.2372 43 1 3.8329 -1.2670 -0.3046 44 1 3.5853 -2.5647 -2.3816 45 1 5.0412 -1.5447 -2.4793 46 1 1.5831 -1.8346 -3.6202 47 1 1.6879 -0.3219 -4.5531 48 1 0.4330 -0.0272 -2.4079 49 1 1.9018 0.9769 -2.4721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331287039.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = -134.747086 kcal Electronic energy + Delta-G solvation = -29079.337839 eV Core-core repulsion = 25167.910895 eV Total energy + Delta-G solvation = -3911.426944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.77122 -38.30186 -38.09839 -37.94892 -36.81591 -35.17351 -33.62011 -32.37744 -31.63465 -28.28288 -27.68158 -27.67233 -27.25721 -26.97609 -24.48974 -22.14748 -21.36037 -21.01526 -20.12561 -18.76882 -18.03145 -17.83366 -17.17726 -16.95050 -16.86083 -16.61791 -16.11200 -15.97606 -15.76989 -15.67596 -15.12703 -14.95911 -14.65969 -14.54010 -14.40702 -14.08182 -13.77123 -13.42939 -13.19233 -13.00644 -12.90257 -12.85151 -12.78317 -12.71800 -12.70281 -12.47275 -12.31345 -12.26968 -12.16196 -12.10470 -11.91055 -11.56317 -11.53398 -11.44257 -11.32607 -10.65640 -10.64075 -10.41459 -10.19434 -9.33892 -8.02247 -6.20850 -0.52952 1.43261 1.46397 1.55803 2.00332 2.44766 2.72827 2.92907 2.96935 3.20216 3.39733 3.68033 3.94309 3.96340 4.04611 4.08654 4.20257 4.21084 4.33295 4.34211 4.41778 4.51908 4.62014 4.66792 4.69620 4.74134 4.81404 4.85463 4.87798 4.88551 4.94895 4.97782 5.01789 5.07051 5.10139 5.15458 5.40482 5.40936 5.52441 5.65836 5.97397 5.98702 6.04842 6.13191 6.18500 6.28373 6.35504 6.84631 7.47597 8.97706 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.003016 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.620799 B = 9280.849288 C = 9726.890459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 H 0.068 0.932 4 C 0.109 3.891 5 N -1.099 6.099 6 S 2.616 3.384 7 O -0.997 6.997 8 O -0.991 6.991 9 C -0.588 4.588 10 C 0.069 3.931 11 C -0.160 4.160 12 C -0.159 4.159 13 C -0.516 4.516 14 H 0.064 0.936 15 C 0.016 3.984 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.285 1.285 20 H -0.284 1.284 21 N -0.539 5.539 22 C 0.013 3.987 23 C 0.062 3.938 24 O -0.404 6.404 25 C 0.057 3.943 26 C 0.018 3.982 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.423 0.577 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.260 0.740 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.767 13.453 -17.921 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.862 5.862 6 S 2.713 3.287 7 O -0.988 6.988 8 O -0.981 6.981 9 C -0.720 4.720 10 C 0.067 3.933 11 C -0.218 4.218 12 C -0.216 4.216 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.210 1.210 21 N -0.265 5.265 22 C -0.115 4.115 23 C -0.015 4.015 24 O -0.323 6.323 25 C -0.020 4.020 26 C -0.110 4.110 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.260 0.740 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.124 0.876 46 H 0.074 0.926 47 H 0.134 0.866 48 H 0.126 0.874 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.036 12.278 -18.143 22.479 hybrid contribution -0.374 0.752 1.531 1.746 sum -5.410 13.030 -16.612 21.795 Atomic orbital electron populations 1.21928 0.92238 1.03042 1.03295 1.21864 0.97284 0.95662 0.88266 0.91448 1.21653 1.00544 0.80163 0.99370 1.55113 1.58822 1.19235 1.52982 1.04603 0.74058 0.73246 0.76816 1.93500 1.79369 1.42952 1.82930 1.93488 1.33081 1.85669 1.85854 1.30468 1.11978 1.10759 1.18783 1.17912 0.91931 0.90259 0.93209 1.22209 0.99985 1.00162 0.99434 1.22190 0.98161 1.01268 1.00019 1.21351 1.29601 1.13934 0.90621 0.91758 1.25689 0.95079 0.94995 1.02527 1.69951 1.34625 1.19538 1.30627 0.85565 0.77994 0.78274 0.80136 1.18808 1.21095 1.21034 1.62186 1.08612 1.53335 1.02394 1.22813 0.88617 1.00155 0.99954 1.22686 0.99664 0.95554 0.83594 1.87947 1.22157 1.80871 1.41305 1.22861 0.80167 1.00413 0.98548 1.22893 1.02290 0.96232 0.89580 0.90484 0.90979 0.91964 0.88907 0.91240 0.73957 0.84463 0.84563 0.95020 0.91181 0.94190 0.94048 0.91280 0.94847 0.92993 0.93594 0.89857 0.93115 0.87618 0.92616 0.86573 0.87385 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.80 71.98 0.63 -1.09 16 2 C 0.08 1.19 2.34 44.91 0.11 1.29 16 3 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.11 2.11 5.11 86.38 0.44 2.55 16 5 N -1.10 -26.65 5.50 -187.51 -1.03 -27.68 16 6 S 2.62 91.57 4.49 -56.49 -0.25 91.32 16 7 O -1.00 -41.21 15.70 -127.65 -2.00 -43.21 16 8 O -0.99 -39.56 15.12 -127.65 -1.93 -41.49 16 9 C -0.59 -21.38 5.01 71.98 0.36 -21.02 16 10 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 11 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 12 C -0.16 -7.79 7.78 71.98 0.56 -7.23 16 13 C -0.52 -26.54 8.01 25.60 0.21 -26.33 16 14 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 15 C 0.02 0.86 5.15 84.66 0.44 1.30 16 16 N -0.91 -50.27 9.35 21.45 0.20 -50.07 16 17 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 18 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 N -0.54 -9.57 4.22 -869.99 -3.67 -13.24 16 22 C 0.01 0.26 5.28 86.31 0.46 0.72 16 23 C 0.06 1.30 7.01 72.01 0.50 1.81 16 24 O -0.40 -8.59 10.83 -148.98 -1.61 -10.20 16 25 C 0.06 0.88 7.01 72.02 0.50 1.38 16 26 C 0.02 0.25 5.31 86.32 0.46 0.70 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.65 6.33 -2.38 -0.02 0.64 16 29 H 0.06 0.83 6.95 -2.39 -0.02 0.81 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.50 6.20 -2.39 -0.01 1.48 16 32 H 0.42 9.31 7.33 -96.74 -0.71 8.60 16 33 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 34 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 35 H 0.03 1.51 5.47 -2.38 -0.01 1.49 16 36 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 37 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 40 H 0.03 1.57 5.46 -2.39 -0.01 1.55 16 41 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 2.02 6.27 -2.39 -0.01 2.00 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.11 1.10 6.16 -2.39 -0.01 1.08 16 49 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -68.28 375.37 -2.84 -71.12 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.23 Total: 29.71 kcal Atomic # 6 Polarization: -55.27 SS G_CDS: 5.20 Total: -50.07 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -4.50 Total: -91.00 kcal Atomic # 8 Polarization: -89.37 SS G_CDS: -5.55 Total: -94.91 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 91.57 SS G_CDS: -0.25 Total: 91.32 kcal Total: -68.28 -2.84 -71.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331287039.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.625 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds