Wall clock time and date at job start Tue Mar 31 2020 18:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47044 * 2 1 4 4 C 1.50700 * 109.46938 * 240.00532 * 2 1 3 5 5 H 1.08001 * 120.00052 * 239.99637 * 4 2 1 6 6 C 1.37881 * 120.00450 * 59.99638 * 4 2 1 7 7 N 1.31513 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47202 * 90.00452 * 8 6 4 10 10 H 1.48501 * 109.47098 * 210.00096 * 8 6 4 11 11 H 1.48499 * 109.47439 * 330.00186 * 8 6 4 12 12 N 1.46495 * 109.47542 * 120.00290 * 2 1 3 13 13 C 1.46497 * 119.99925 * 59.99648 * 12 2 1 14 14 S 1.65598 * 120.00065 * 240.00183 * 12 2 1 15 15 O 1.42098 * 106.40591 * 336.45467 * 14 12 2 16 16 O 1.42102 * 106.40340 * 203.53819 * 14 12 2 17 17 N 1.65596 * 107.22093 * 89.99906 * 14 12 2 18 18 C 1.46494 * 120.00193 * 89.99812 * 17 14 12 19 19 C 1.53004 * 109.47463 * 93.76758 * 18 17 14 20 20 C 1.53778 * 113.61194 * 271.81323 * 19 18 17 21 21 C 1.53946 * 87.01909 * 220.04430 * 20 19 18 22 22 C 1.53778 * 87.11524 * 25.36331 * 21 20 19 23 23 C 1.46497 * 119.99797 * 270.00089 * 17 14 12 24 24 H 1.09002 * 109.47614 * 4.68647 * 23 17 14 25 25 C 1.53002 * 109.47355 * 124.68546 * 23 17 14 26 26 C 1.53008 * 109.47030 * 244.68455 * 23 17 14 27 27 O 1.42893 * 109.46741 * 62.29644 * 26 23 17 28 28 H 1.08994 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46740 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47165 * 59.99719 * 1 2 3 31 31 H 0.96999 * 119.99837 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47451 * 270.00544 * 13 12 2 33 33 H 1.09004 * 109.47348 * 30.00630 * 13 12 2 34 34 H 1.09005 * 109.47493 * 150.00197 * 13 12 2 35 35 H 1.08998 * 109.47366 * 333.76319 * 18 17 14 36 36 H 1.09004 * 109.47588 * 213.76672 * 18 17 14 37 37 H 1.09004 * 112.84650 * 43.00565 * 19 18 17 38 38 H 1.09004 * 113.61610 * 334.56350 * 20 19 18 39 39 H 1.09009 * 113.61417 * 105.46457 * 20 19 18 40 40 H 1.08997 * 113.53906 * 270.81046 * 21 20 19 41 41 H 1.09005 * 113.66877 * 139.93669 * 21 20 19 42 42 H 1.08993 * 113.61992 * 220.09755 * 22 21 20 43 43 H 1.08999 * 113.68740 * 89.19205 * 22 21 20 44 44 H 1.09005 * 109.46725 * 55.60284 * 25 23 17 45 45 H 1.09001 * 109.47261 * 175.59590 * 25 23 17 46 46 H 1.08993 * 109.47269 * 295.60151 * 25 23 17 47 47 H 1.09003 * 109.47025 * 182.29431 * 26 23 17 48 48 H 1.08996 * 109.46852 * 302.29583 * 26 23 17 49 49 H 0.96698 * 113.99908 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4126 10 1 2.4871 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.5795 1.1829 1.5748 16 8 3.7120 -0.8790 2.9813 17 7 1.9608 0.8089 3.3998 18 6 1.5815 0.0696 4.6063 19 6 2.5352 0.4309 5.7469 20 6 3.7936 -0.4514 5.8003 21 6 3.6372 -0.4422 7.3317 22 6 2.1391 -0.1844 7.0994 23 6 1.4470 2.1628 3.1784 24 1 1.7667 2.5172 2.1984 25 6 -0.0817 2.1446 3.2402 26 6 1.9901 3.0978 4.2610 27 8 3.4149 3.1562 4.1688 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7094 1.1619 -3.4844 32 1 0.7377 -2.1444 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4630 -2.5820 1.9862 35 1 1.6392 -1.0009 4.4097 36 1 0.5619 0.3327 4.8882 37 1 2.7480 1.4987 5.7985 38 1 3.6560 -1.4359 5.3532 39 1 4.6948 0.0517 5.4494 40 1 4.1527 0.3866 7.8170 41 1 3.8475 -1.4044 7.7989 42 1 1.7064 0.5338 7.7957 43 1 1.5471 -1.0951 7.0081 44 1 -0.4018 1.7173 4.1905 45 1 -0.4610 3.1629 3.1537 46 1 -0.4713 1.5409 2.4207 47 1 1.5756 4.0960 4.1203 48 1 1.7046 2.7209 5.2431 49 1 3.8282 3.7324 4.8263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332076632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:28 Heat of formation + Delta-G solvation = -100.249060 kcal Electronic energy + Delta-G solvation = -30377.016204 eV Core-core repulsion = 26467.085207 eV Total energy + Delta-G solvation = -3909.930997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.26426 -37.50158 -36.43148 -36.07317 -35.31543 -34.98964 -32.52680 -31.11783 -29.04744 -27.65591 -26.12273 -25.49603 -25.36135 -25.11174 -22.87751 -21.05508 -20.30869 -19.41788 -18.38449 -17.41164 -17.16548 -16.77970 -16.26315 -15.81136 -15.32574 -15.07738 -14.83287 -14.47844 -14.26721 -13.77085 -13.42392 -13.17708 -13.02059 -12.74825 -12.62602 -12.31121 -12.27611 -12.09081 -11.93282 -11.81669 -11.67726 -11.49853 -11.33241 -11.16781 -11.15536 -10.96909 -10.82649 -10.76912 -10.65929 -10.56931 -10.32089 -10.27772 -10.18068 -10.02435 -9.98316 -9.81563 -9.22178 -8.68741 -8.42231 -7.88010 -6.04645 -4.10645 1.33373 3.29937 3.37011 3.41626 3.54184 4.20006 4.29956 4.43198 4.67746 4.73129 4.80312 4.94348 4.98134 5.08762 5.23347 5.27007 5.28460 5.38664 5.45536 5.54823 5.57183 5.67933 5.73045 5.75512 5.81644 5.86427 5.87795 5.91833 6.08489 6.14650 6.20030 6.27863 6.36396 6.39587 6.54206 6.67915 6.70625 6.84090 6.88600 7.00033 7.07777 7.54233 7.67327 7.72221 7.83428 8.08663 8.31593 8.91210 9.54751 11.01000 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.004320 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.770563 B = 6479.361567 C = 6954.609014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.056 0.944 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.993 5.993 13 C 0.098 3.902 14 S 2.778 3.222 15 O -0.967 6.967 16 O -0.991 6.991 17 N -0.994 5.994 18 C 0.135 3.865 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.134 4.134 23 C 0.149 3.851 24 H 0.105 0.895 25 C -0.163 4.163 26 C 0.065 3.935 27 O -0.558 6.558 28 H 0.031 0.969 29 H 0.012 0.988 30 H 0.091 0.909 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 1.746 18.519 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.074 0.926 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.835 5.835 13 C -0.049 4.049 14 S 2.788 3.212 15 O -0.951 6.951 16 O -0.975 6.975 17 N -0.831 5.831 18 C 0.009 3.991 19 C -0.155 4.155 20 C -0.163 4.163 21 C -0.184 4.184 22 C -0.172 4.172 23 C 0.042 3.958 24 H 0.123 0.877 25 C -0.222 4.222 26 C -0.014 4.014 27 O -0.362 6.362 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.054 1.497 17.848 18.028 hybrid contribution -0.154 -0.019 -0.396 0.425 sum -2.208 1.478 17.452 17.653 Atomic orbital electron populations 1.22161 0.98353 0.99686 1.00454 1.18676 0.91195 0.92927 0.80644 0.92609 1.21347 1.31455 1.12954 0.90141 0.92020 1.24896 0.94993 0.95005 0.98947 1.69856 1.36669 1.22655 1.23699 0.86517 0.79315 0.79305 0.82413 1.20680 1.21114 1.19830 1.57823 1.70133 1.19744 1.35832 1.21264 0.98528 0.82656 1.02466 1.02071 0.73760 0.73048 0.72272 1.93593 1.73631 1.55676 1.72198 1.93502 1.69026 1.60594 1.74332 1.58170 1.67491 1.23405 1.33996 1.21195 0.98127 0.95554 0.84190 1.23243 0.97248 1.00757 0.94219 1.22969 0.97896 1.01076 0.94341 1.22871 0.96465 1.01304 0.97763 1.22882 0.96685 1.00797 0.96871 1.20796 0.93681 0.81317 0.99987 0.87664 1.22163 0.94159 1.02704 1.03166 1.22669 0.81876 0.98154 0.98741 1.86675 1.19183 1.70886 1.59413 0.94954 0.96906 0.89049 0.92760 0.94723 0.90052 0.92053 0.90477 0.90768 0.88324 0.88939 0.91824 0.90829 0.91850 0.92020 0.90185 0.92145 0.91594 0.90486 0.93282 0.93064 0.78299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.27 6.63 2.62 -69.09 -0.18 6.45 16 3 H 0.06 1.54 6.91 -51.92 -0.36 1.18 16 4 C -0.52 -14.16 7.99 -34.44 -0.28 -14.44 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.19 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.99 -21.12 3.12 -115.86 -0.36 -21.48 16 13 C 0.10 1.77 9.65 59.85 0.58 2.35 16 14 S 2.78 57.16 6.04 -107.50 -0.65 56.51 16 15 O -0.97 -23.97 15.32 -57.17 -0.88 -24.85 16 16 O -0.99 -20.61 13.49 -57.17 -0.77 -21.38 16 17 N -0.99 -15.62 2.70 -107.30 -0.29 -15.91 16 18 C 0.14 1.72 4.84 -4.04 -0.02 1.70 16 19 C -0.13 -1.59 3.50 -89.81 -0.31 -1.91 16 20 C -0.13 -1.68 6.20 -25.83 -0.16 -1.84 16 21 C -0.15 -1.51 8.09 -25.83 -0.21 -1.72 16 22 C -0.13 -1.28 7.65 -25.92 -0.20 -1.47 16 23 C 0.15 2.17 2.88 -67.93 -0.20 1.97 16 24 H 0.11 1.87 7.00 -51.93 -0.36 1.51 16 25 C -0.16 -1.92 9.17 37.16 0.34 -1.58 16 26 C 0.07 0.77 5.69 37.16 0.21 0.98 16 27 O -0.56 -7.63 12.94 -35.23 -0.46 -8.08 16 28 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 29 H 0.01 0.24 6.06 -51.93 -0.31 -0.08 16 30 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.55 7.02 -51.93 -0.36 1.19 16 34 H 0.06 1.05 7.02 -51.93 -0.36 0.69 16 35 H 0.08 1.00 7.34 -51.93 -0.38 0.62 16 36 H 0.07 0.77 6.13 -51.93 -0.32 0.46 16 37 H 0.10 1.15 4.71 -51.93 -0.24 0.91 16 38 H 0.09 1.37 7.16 -51.93 -0.37 0.99 16 39 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.06 0.59 6.36 -51.93 -0.33 0.26 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.04 6.05 -51.93 -0.31 0.72 16 47 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.05 0.51 5.86 -51.93 -0.30 0.20 16 49 H 0.37 3.17 9.12 45.56 0.42 3.58 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -33.07 379.55 -9.49 -42.56 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.23 Total: 5.63 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.18 Total: -10.83 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.02 Total: -61.57 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -2.10 Total: -54.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 57.16 SS G_CDS: -0.65 Total: 56.51 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.07 -9.49 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.690 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds