Wall clock time and date at job start Tue Mar 31 2020 18:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47044 * 2 1 4 4 C 1.50700 * 109.46938 * 240.00532 * 2 1 3 5 5 H 1.08001 * 120.00052 * 239.99637 * 4 2 1 6 6 C 1.37881 * 120.00450 * 59.99638 * 4 2 1 7 7 N 1.31513 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00101 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47202 * 90.00452 * 8 6 4 10 10 H 1.48501 * 109.47098 * 210.00096 * 8 6 4 11 11 H 1.48499 * 109.47439 * 330.00186 * 8 6 4 12 12 N 1.46495 * 109.47542 * 120.00290 * 2 1 3 13 13 C 1.46497 * 119.99925 * 59.99648 * 12 2 1 14 14 S 1.65598 * 120.00065 * 240.00183 * 12 2 1 15 15 O 1.42098 * 106.40591 * 336.45467 * 14 12 2 16 16 O 1.42102 * 106.40340 * 203.53819 * 14 12 2 17 17 N 1.65596 * 107.22093 * 89.99906 * 14 12 2 18 18 C 1.46494 * 120.00193 * 89.99812 * 17 14 12 19 19 C 1.53004 * 109.47463 * 93.76758 * 18 17 14 20 20 C 1.53778 * 113.61194 * 271.81323 * 19 18 17 21 21 C 1.53946 * 87.01909 * 220.04430 * 20 19 18 22 22 C 1.53778 * 87.11524 * 25.36331 * 21 20 19 23 23 C 1.46497 * 119.99797 * 270.00089 * 17 14 12 24 24 H 1.09002 * 109.47614 * 4.68647 * 23 17 14 25 25 C 1.53002 * 109.47355 * 124.68546 * 23 17 14 26 26 C 1.53008 * 109.47030 * 244.68455 * 23 17 14 27 27 O 1.42893 * 109.46741 * 62.29644 * 26 23 17 28 28 H 1.08994 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46740 * 299.99686 * 1 2 3 30 30 H 1.09004 * 109.47165 * 59.99719 * 1 2 3 31 31 H 0.96999 * 119.99837 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47451 * 270.00544 * 13 12 2 33 33 H 1.09004 * 109.47348 * 30.00630 * 13 12 2 34 34 H 1.09005 * 109.47493 * 150.00197 * 13 12 2 35 35 H 1.08998 * 109.47366 * 333.76319 * 18 17 14 36 36 H 1.09004 * 109.47588 * 213.76672 * 18 17 14 37 37 H 1.09004 * 112.84650 * 43.00565 * 19 18 17 38 38 H 1.09004 * 113.61610 * 334.56350 * 20 19 18 39 39 H 1.09009 * 113.61417 * 105.46457 * 20 19 18 40 40 H 1.08997 * 113.53906 * 270.81046 * 21 20 19 41 41 H 1.09005 * 113.66877 * 139.93669 * 21 20 19 42 42 H 1.08993 * 113.61992 * 220.09755 * 22 21 20 43 43 H 1.08999 * 113.68740 * 89.19205 * 22 21 20 44 44 H 1.09005 * 109.46725 * 55.60284 * 25 23 17 45 45 H 1.09001 * 109.47261 * 175.59590 * 25 23 17 46 46 H 1.08993 * 109.47269 * 295.60151 * 25 23 17 47 47 H 1.09003 * 109.47025 * 182.29431 * 26 23 17 48 48 H 1.08996 * 109.46852 * 302.29583 * 26 23 17 49 49 H 0.96698 * 113.99908 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.3447 -2.1613 -4.4126 10 1 2.4871 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2861 15 8 3.5795 1.1829 1.5748 16 8 3.7120 -0.8790 2.9813 17 7 1.9608 0.8089 3.3998 18 6 1.5815 0.0696 4.6063 19 6 2.5352 0.4309 5.7469 20 6 3.7936 -0.4514 5.8003 21 6 3.6372 -0.4422 7.3317 22 6 2.1391 -0.1844 7.0994 23 6 1.4470 2.1628 3.1784 24 1 1.7667 2.5172 2.1984 25 6 -0.0817 2.1446 3.2402 26 6 1.9901 3.0978 4.2610 27 8 3.4149 3.1562 4.1688 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7094 1.1619 -3.4844 32 1 0.7377 -2.1444 1.9992 33 1 1.5296 -2.5969 0.4707 34 1 2.4630 -2.5820 1.9862 35 1 1.6392 -1.0009 4.4097 36 1 0.5619 0.3327 4.8882 37 1 2.7480 1.4987 5.7985 38 1 3.6560 -1.4359 5.3532 39 1 4.6948 0.0517 5.4494 40 1 4.1527 0.3866 7.8170 41 1 3.8475 -1.4044 7.7989 42 1 1.7064 0.5338 7.7957 43 1 1.5471 -1.0951 7.0081 44 1 -0.4018 1.7173 4.1905 45 1 -0.4610 3.1629 3.1537 46 1 -0.4713 1.5409 2.4207 47 1 1.5756 4.0960 4.1203 48 1 1.7046 2.7209 5.2431 49 1 3.8282 3.7324 4.8263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332076632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:27 Heat of formation + Delta-G solvation = -125.160771 kcal Electronic energy + Delta-G solvation = -30378.096457 eV Core-core repulsion = 26467.085207 eV Total energy + Delta-G solvation = -3911.011250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23152 -38.63034 -38.01033 -37.84763 -36.72888 -36.39362 -34.51708 -32.17528 -30.89701 -28.70563 -27.32385 -26.99616 -26.92345 -26.30734 -23.81707 -22.69365 -21.70264 -20.33940 -19.75864 -18.90582 -18.58174 -18.19471 -18.06093 -17.27024 -16.68461 -16.26448 -16.01784 -15.90170 -15.46226 -15.20001 -14.86632 -14.66222 -14.44024 -14.02557 -13.80994 -13.69368 -13.43060 -13.36744 -13.31077 -13.21279 -13.01814 -12.92088 -12.85736 -12.81240 -12.63444 -12.59092 -12.45463 -12.26791 -12.12705 -12.08006 -11.88630 -11.69638 -11.44453 -11.20138 -11.11712 -10.95394 -10.72729 -10.50802 -9.86078 -9.58829 -8.12552 -6.26110 -0.25058 1.39754 1.42080 1.51634 2.11280 2.41769 2.67583 3.15050 3.33266 3.47348 3.73426 3.88587 3.92242 4.05293 4.09421 4.14952 4.22622 4.25649 4.46481 4.51351 4.62665 4.68466 4.72702 4.75024 4.76939 4.80033 4.84235 4.96339 4.99042 5.02290 5.04588 5.12999 5.15713 5.19545 5.24310 5.27379 5.31048 5.45558 5.54434 5.60349 5.67752 5.75688 5.86998 5.94056 6.18165 6.30668 6.81005 7.00399 7.42367 8.91401 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.004320 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.770563 B = 6479.361567 C = 6954.609014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.277 1.277 12 N -1.002 6.002 13 C 0.094 3.906 14 S 2.786 3.214 15 O -1.019 7.019 16 O -1.000 7.000 17 N -0.983 5.983 18 C 0.126 3.874 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.117 4.117 23 C 0.138 3.862 24 H 0.061 0.939 25 C -0.155 4.155 26 C 0.067 3.933 27 O -0.592 6.592 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.265 0.735 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 1.526 21.075 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.172 3.828 3 H 0.035 0.965 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.843 5.843 13 C -0.052 4.052 14 S 2.797 3.203 15 O -1.003 7.003 16 O -0.984 6.984 17 N -0.823 5.823 18 C 0.002 3.998 19 C -0.155 4.155 20 C -0.181 4.181 21 C -0.176 4.176 22 C -0.155 4.155 23 C 0.032 3.968 24 H 0.079 0.921 25 C -0.214 4.214 26 C -0.012 4.012 27 O -0.399 6.399 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.938 1.260 20.419 20.834 hybrid contribution 0.495 0.075 -1.117 1.224 sum -3.442 1.335 19.303 19.653 Atomic orbital electron populations 1.21931 0.96532 1.00091 1.00590 1.18324 0.92401 0.90914 0.81171 0.96532 1.21664 1.31715 1.13031 0.91739 0.92907 1.25621 0.95208 0.95716 1.01556 1.69970 1.37231 1.23491 1.24328 0.85628 0.78762 0.78554 0.79134 1.19193 1.20734 1.20221 1.57725 1.70140 1.21011 1.35423 1.21427 1.00394 0.80915 1.02426 1.01531 0.74062 0.72317 0.72383 1.93520 1.75444 1.57397 1.73911 1.93483 1.69799 1.60914 1.74199 1.57753 1.66882 1.23945 1.33716 1.21553 1.00204 0.95148 0.82895 1.23277 0.96113 1.00744 0.95384 1.23000 0.97750 1.00236 0.97115 1.22858 0.97529 1.02188 0.95034 1.22826 0.96041 1.01469 0.95166 1.21024 0.95799 0.80918 0.99104 0.92081 1.22114 0.91527 1.03918 1.03816 1.22727 0.81043 0.98666 0.98746 1.86633 1.20550 1.71872 1.60875 0.94204 0.94038 0.91634 0.92605 0.91395 0.91274 0.91301 0.90804 0.87252 0.87941 0.90849 0.94774 0.89863 0.91121 0.89613 0.89212 0.89226 0.89581 0.92550 0.91024 0.90237 0.75953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.97 71.98 0.65 -5.33 16 2 C 0.28 14.10 2.62 44.25 0.12 14.22 16 3 H 0.02 0.99 6.91 -2.38 -0.02 0.97 16 4 C -0.54 -30.45 7.99 25.60 0.20 -30.25 16 5 H 0.05 2.97 7.33 -2.91 -0.02 2.95 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -51.98 11.32 21.45 0.24 -51.74 16 8 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 N -1.00 -43.49 3.12 -520.46 -1.62 -45.12 16 13 C 0.09 3.39 9.65 127.77 1.23 4.62 16 14 S 2.79 118.27 6.04 -56.49 -0.34 117.93 16 15 O -1.02 -53.61 15.32 -128.00 -1.96 -55.57 16 16 O -1.00 -42.78 13.49 -128.00 -1.73 -44.51 16 17 N -0.98 -30.20 2.70 -493.38 -1.33 -31.53 16 18 C 0.13 2.89 4.84 86.38 0.42 3.31 16 19 C -0.14 -2.86 3.50 -10.27 -0.04 -2.90 16 20 C -0.14 -3.77 6.20 31.18 0.19 -3.57 16 21 C -0.14 -2.51 8.09 31.18 0.25 -2.26 16 22 C -0.12 -1.75 7.65 31.12 0.24 -1.51 16 23 C 0.14 3.90 2.88 45.00 0.13 4.03 16 24 H 0.06 2.28 7.00 -2.39 -0.02 2.27 16 25 C -0.16 -3.23 9.17 71.98 0.66 -2.57 16 26 C 0.07 1.43 5.69 71.98 0.41 1.84 16 27 O -0.59 -15.88 12.94 -148.98 -1.93 -17.81 16 28 H 0.04 1.69 7.67 -2.39 -0.02 1.67 16 29 H 0.04 1.59 6.06 -2.39 -0.01 1.58 16 30 H 0.06 3.33 6.07 -2.39 -0.01 3.31 16 31 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.65 7.02 -2.38 -0.02 2.63 16 34 H 0.07 2.35 7.02 -2.38 -0.02 2.33 16 35 H 0.07 1.76 7.34 -2.39 -0.02 1.74 16 36 H 0.11 1.76 6.13 -2.38 -0.01 1.74 16 37 H 0.10 2.11 4.71 -2.38 -0.01 2.09 16 38 H 0.07 2.18 7.16 -2.38 -0.02 2.16 16 39 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.09 1.33 6.36 -2.38 -0.02 1.32 16 45 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.41 6.05 -2.39 -0.01 1.40 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.08 1.25 5.86 -2.39 -0.01 1.24 16 49 H 0.39 6.26 9.12 -74.06 -0.68 5.58 16 Total: -1.00 -76.06 379.55 -1.45 -77.51 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.28 Total: 23.38 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 4.91 Total: -18.87 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -2.71 Total: -128.39 kcal Atomic # 8 Polarization: -112.27 SS G_CDS: -5.61 Total: -117.89 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 118.27 SS G_CDS: -0.34 Total: 117.93 kcal Total: -76.06 -1.45 -77.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.651 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds