Wall clock time and date at job start Tue Mar 31 2020 18:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47278 * 2 1 4 4 C 1.53003 * 109.46781 * 240.00279 * 2 1 3 5 5 O 1.42904 * 109.46778 * 177.07479 * 4 2 1 6 6 N 1.46501 * 109.47156 * 120.00576 * 2 1 3 7 7 C 1.46502 * 119.99945 * 54.32979 * 6 2 1 8 8 C 1.52999 * 109.46818 * 109.01206 * 7 6 2 9 9 C 1.53780 * 113.61716 * 270.98741 * 8 7 6 10 10 C 1.53955 * 87.01981 * 220.05115 * 9 8 7 11 11 C 1.53781 * 87.11124 * 25.36289 * 10 9 8 12 12 S 1.65599 * 119.99820 * 234.33163 * 6 2 1 13 13 O 1.42107 * 106.40085 * 197.23577 * 12 6 2 14 14 O 1.42103 * 106.40326 * 330.15521 * 12 6 2 15 15 N 1.65599 * 107.21955 * 83.69595 * 12 6 2 16 16 C 1.46495 * 119.99784 * 89.99665 * 15 12 6 17 17 C 1.46493 * 119.99815 * 269.99964 * 15 12 6 18 18 H 1.08993 * 109.47594 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.46976 * 120.00045 * 17 15 12 20 20 C 1.50701 * 109.47017 * 239.99613 * 17 15 12 21 21 H 1.07996 * 119.99965 * 0.02562 * 20 17 15 22 22 C 1.37877 * 119.99999 * 180.02562 * 20 17 15 23 23 N 1.31509 * 120.00332 * 0.02562 * 22 20 17 24 24 Si 1.86799 * 119.99873 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47280 * 60.00320 * 24 22 20 26 26 H 1.48508 * 109.47358 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47396 * 300.00310 * 24 22 20 28 28 H 1.08993 * 109.47522 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47271 * 299.99791 * 1 2 3 30 30 H 1.09005 * 109.47516 * 59.99541 * 1 2 3 31 31 H 1.09006 * 109.47012 * 57.08059 * 4 2 1 32 32 H 1.08994 * 109.47658 * 297.07751 * 4 2 1 33 33 H 0.96700 * 113.99675 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.46817 * 229.01723 * 7 6 2 35 35 H 1.08998 * 109.47141 * 349.01872 * 7 6 2 36 36 H 1.09006 * 112.84933 * 42.18832 * 8 7 6 37 37 H 1.08994 * 113.61561 * 334.57369 * 9 8 7 38 38 H 1.09004 * 113.60954 * 105.47786 * 9 8 7 39 39 H 1.09003 * 113.53665 * 270.81144 * 10 9 8 40 40 H 1.08995 * 113.66698 * 139.93683 * 10 9 8 41 41 H 1.09007 * 113.61299 * 220.08986 * 11 10 9 42 42 H 1.09004 * 113.68758 * 89.20184 * 11 10 9 43 43 H 1.08997 * 109.47551 * 90.00057 * 16 15 12 44 44 H 1.09006 * 109.47419 * 209.99984 * 16 15 12 45 45 H 1.09000 * 109.47629 * 330.00268 * 16 15 12 46 46 H 1.09005 * 109.47420 * 59.99831 * 19 17 15 47 47 H 1.09008 * 109.47194 * 179.97438 * 19 17 15 48 48 H 1.09000 * 109.47684 * 299.99349 * 19 17 15 49 49 H 0.96994 * 120.00686 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 3.4673 -0.6620 -1.2842 6 7 2.0183 -0.6907 1.1961 7 6 1.5649 -2.0520 1.4923 8 6 2.7166 -3.0335 1.2660 9 6 2.7956 -3.5693 -0.1733 10 6 3.1392 -4.9386 0.4409 11 6 2.3944 -4.4724 1.7029 12 16 3.0827 0.0673 2.2133 13 8 3.6680 -0.9512 3.0130 14 8 3.8439 0.9564 1.4076 15 7 2.1912 1.0131 3.2395 16 6 1.7075 0.4631 4.5082 17 6 1.8862 2.3996 2.8784 18 1 2.3261 2.6276 1.9077 19 6 0.3692 2.5864 2.8080 20 6 2.4586 3.3272 3.9191 21 1 2.9962 2.9242 4.7646 22 6 2.2959 4.6904 3.7918 23 7 1.6408 5.1813 2.7625 24 14 3.0061 5.8402 5.0814 25 1 4.4785 5.6595 5.1488 26 1 2.6968 7.2459 4.7155 27 1 2.4082 5.5296 6.4047 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6344 -0.2384 -2.1385 32 1 1.7200 -1.7628 -1.2236 33 1 3.8604 -1.0999 -2.0515 34 1 1.2382 -2.1082 2.5306 35 1 0.7340 -2.3092 0.8354 36 1 3.6686 -2.6642 1.6474 37 1 1.8405 -3.5535 -0.6982 38 1 3.6077 -3.1354 -0.7567 39 1 4.2074 -5.0907 0.5954 40 1 2.6600 -5.7773 -0.0642 41 1 2.8830 -4.7664 2.6319 42 1 1.3292 -4.7035 1.6933 43 1 2.4505 0.6371 5.2865 44 1 0.7724 0.9512 4.7830 45 1 1.5397 -0.6084 4.3994 46 1 -0.0705 2.3586 3.7790 47 1 0.1422 3.6182 2.5397 48 1 -0.0449 1.9155 2.0553 49 1 1.5267 6.1403 2.6727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332076634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:31 Heat of formation + Delta-G solvation = -100.169585 kcal Electronic energy + Delta-G solvation = -30371.958824 eV Core-core repulsion = 26462.031273 eV Total energy + Delta-G solvation = -3909.927551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.30446 -37.44304 -36.44717 -36.08591 -35.31159 -35.00161 -32.52714 -31.20023 -29.04088 -27.56361 -26.15807 -25.54150 -25.46740 -25.06233 -22.96800 -21.05094 -20.33883 -19.61463 -18.20543 -17.27026 -17.12912 -16.76232 -16.30164 -15.87477 -15.38068 -15.09761 -14.80769 -14.46284 -14.31214 -13.64899 -13.35343 -13.25190 -13.15051 -12.84245 -12.79298 -12.53006 -12.24361 -12.07061 -11.85729 -11.81681 -11.64142 -11.49733 -11.31270 -11.20059 -11.14509 -10.98853 -10.87861 -10.75827 -10.73441 -10.58298 -10.39678 -10.23542 -10.21795 -10.11958 -9.93742 -9.79022 -9.20766 -8.68218 -8.40987 -7.88024 -6.03503 -4.09555 1.32316 3.32986 3.36975 3.40811 3.53642 4.18230 4.32998 4.43884 4.61026 4.67579 4.75411 4.83798 5.01402 5.10340 5.22359 5.25226 5.27835 5.41687 5.49397 5.53222 5.55013 5.59076 5.66772 5.72496 5.77049 5.81177 5.86386 5.90443 6.01548 6.07024 6.17412 6.20295 6.26853 6.38836 6.49191 6.59041 6.68278 6.83120 6.83670 7.00461 7.06205 7.53987 7.68581 7.78709 7.83827 8.08496 8.32514 8.92285 9.55930 11.02088 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.004252 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.261608 B = 6583.985373 C = 7020.993546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.103 0.897 4 C 0.064 3.936 5 O -0.554 6.554 6 N -0.996 5.996 7 C 0.139 3.861 8 C -0.132 4.132 9 C -0.134 4.134 10 C -0.143 4.143 11 C -0.134 4.134 12 S 2.778 3.222 13 O -0.995 6.995 14 O -0.963 6.963 15 N -0.994 5.994 16 C 0.112 3.888 17 C 0.268 3.732 18 H 0.057 0.943 19 C -0.150 4.150 20 C -0.519 4.519 21 H 0.061 0.939 22 C 0.064 3.936 23 N -0.891 5.891 24 Si 0.897 3.103 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.369 0.631 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.032 0.968 47 H 0.092 0.908 48 H 0.013 0.987 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -16.905 -7.569 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 H 0.121 0.879 4 C -0.015 4.015 5 O -0.357 6.357 6 N -0.832 5.832 7 C 0.013 3.987 8 C -0.152 4.152 9 C -0.171 4.171 10 C -0.181 4.181 11 C -0.172 4.172 12 S 2.789 3.211 13 O -0.979 6.979 14 O -0.947 6.947 15 N -0.836 5.836 16 C -0.035 4.035 17 C 0.165 3.835 18 H 0.075 0.925 19 C -0.209 4.209 20 C -0.559 4.559 21 H 0.079 0.921 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.725 3.275 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.215 0.785 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.111 0.889 48 H 0.032 0.968 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.989 -16.474 -7.089 18.373 hybrid contribution -0.075 0.433 0.175 0.473 sum -4.064 -16.041 -6.914 17.934 Atomic orbital electron populations 1.22168 0.94149 1.02182 1.03536 1.20786 0.94067 0.97186 0.83588 0.87877 1.22689 0.82068 0.99535 0.97225 1.86702 1.19162 1.80576 1.49284 1.58209 1.65306 1.23306 1.36410 1.21156 0.96219 0.80669 1.00647 1.23176 1.01006 0.94401 0.96573 1.23051 1.01344 0.96055 0.96683 1.22833 1.00556 0.97090 0.97588 1.22864 1.00301 0.95935 0.98079 1.02123 0.73806 0.72455 0.72746 1.93499 1.75394 1.59287 1.69723 1.93610 1.67052 1.64951 1.69063 1.57843 1.72264 1.24097 1.29428 1.21103 1.00256 0.95829 0.86286 1.18686 0.92782 0.74764 0.97228 0.92529 1.22182 0.97790 1.02975 0.97931 1.21308 1.35012 0.90834 1.08711 0.92119 1.24889 0.95106 0.98023 0.95793 1.69836 1.41226 1.12993 1.28914 0.86578 0.79771 0.79556 0.81627 1.20165 1.21222 1.20267 0.92374 0.90503 0.91538 0.93471 0.93019 0.78511 0.91487 0.90280 0.87540 0.90597 0.91309 0.90391 0.91904 0.91370 0.90353 0.93491 0.91166 0.93518 0.94867 0.88941 0.96788 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.09 37.16 0.34 -1.53 16 2 C 0.15 2.18 2.81 -67.93 -0.19 1.99 16 3 H 0.10 1.83 7.21 -51.93 -0.37 1.46 16 4 C 0.06 0.76 6.04 37.16 0.22 0.99 16 5 O -0.55 -7.67 12.74 -35.23 -0.45 -8.12 16 6 N -1.00 -15.62 2.70 -107.30 -0.29 -15.91 16 7 C 0.14 1.77 4.49 -4.04 -0.02 1.75 16 8 C -0.13 -1.68 3.58 -89.81 -0.32 -2.00 16 9 C -0.13 -1.38 5.73 -25.83 -0.15 -1.52 16 10 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 11 C -0.13 -1.38 7.65 -25.92 -0.20 -1.58 16 12 S 2.78 57.68 5.88 -107.50 -0.63 57.05 16 13 O -0.99 -21.31 14.42 -57.17 -0.82 -22.13 16 14 O -0.96 -23.91 15.56 -57.17 -0.89 -24.80 16 15 N -0.99 -21.29 3.12 -115.86 -0.36 -21.65 16 16 C 0.11 2.07 9.53 59.84 0.57 2.64 16 17 C 0.27 6.63 2.62 -69.09 -0.18 6.45 16 18 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 19 C -0.15 -3.34 8.95 37.16 0.33 -3.01 16 20 C -0.52 -14.24 8.37 -34.44 -0.29 -14.52 16 21 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 22 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 24 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 29 H 0.08 1.00 6.07 -51.93 -0.32 0.69 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.51 4.76 -51.93 -0.25 0.26 16 33 H 0.37 3.27 9.12 45.56 0.42 3.69 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.80 5.85 -51.93 -0.30 0.49 16 36 H 0.11 1.73 6.22 -51.93 -0.32 1.40 16 37 H 0.08 0.67 6.70 -51.93 -0.35 0.32 16 38 H 0.07 0.73 7.37 -51.93 -0.38 0.35 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 45 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 46 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 47 H 0.09 2.30 6.07 -51.92 -0.32 1.98 16 48 H 0.01 0.26 6.07 -51.93 -0.32 -0.06 16 49 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -33.39 379.67 -9.51 -42.91 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.21 Total: 5.03 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.18 Total: -10.26 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.02 Total: -61.80 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -2.16 Total: -55.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 57.68 SS G_CDS: -0.63 Total: 57.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.39 -9.51 -42.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.264 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds