Wall clock time and date at job start Tue Mar 31 2020 18:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47278 * 2 1 4 4 C 1.53003 * 109.46781 * 240.00279 * 2 1 3 5 5 O 1.42904 * 109.46778 * 177.07479 * 4 2 1 6 6 N 1.46501 * 109.47156 * 120.00576 * 2 1 3 7 7 C 1.46502 * 119.99945 * 54.32979 * 6 2 1 8 8 C 1.52999 * 109.46818 * 109.01206 * 7 6 2 9 9 C 1.53780 * 113.61716 * 270.98741 * 8 7 6 10 10 C 1.53955 * 87.01981 * 220.05115 * 9 8 7 11 11 C 1.53781 * 87.11124 * 25.36289 * 10 9 8 12 12 S 1.65599 * 119.99820 * 234.33163 * 6 2 1 13 13 O 1.42107 * 106.40085 * 197.23577 * 12 6 2 14 14 O 1.42103 * 106.40326 * 330.15521 * 12 6 2 15 15 N 1.65599 * 107.21955 * 83.69595 * 12 6 2 16 16 C 1.46495 * 119.99784 * 89.99665 * 15 12 6 17 17 C 1.46493 * 119.99815 * 269.99964 * 15 12 6 18 18 H 1.08993 * 109.47594 * 359.97438 * 17 15 12 19 19 C 1.53000 * 109.46976 * 120.00045 * 17 15 12 20 20 C 1.50701 * 109.47017 * 239.99613 * 17 15 12 21 21 H 1.07996 * 119.99965 * 0.02562 * 20 17 15 22 22 C 1.37877 * 119.99999 * 180.02562 * 20 17 15 23 23 N 1.31509 * 120.00332 * 0.02562 * 22 20 17 24 24 Si 1.86799 * 119.99873 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47280 * 60.00320 * 24 22 20 26 26 H 1.48508 * 109.47358 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47396 * 300.00310 * 24 22 20 28 28 H 1.08993 * 109.47522 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47271 * 299.99791 * 1 2 3 30 30 H 1.09005 * 109.47516 * 59.99541 * 1 2 3 31 31 H 1.09006 * 109.47012 * 57.08059 * 4 2 1 32 32 H 1.08994 * 109.47658 * 297.07751 * 4 2 1 33 33 H 0.96700 * 113.99675 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.46817 * 229.01723 * 7 6 2 35 35 H 1.08998 * 109.47141 * 349.01872 * 7 6 2 36 36 H 1.09006 * 112.84933 * 42.18832 * 8 7 6 37 37 H 1.08994 * 113.61561 * 334.57369 * 9 8 7 38 38 H 1.09004 * 113.60954 * 105.47786 * 9 8 7 39 39 H 1.09003 * 113.53665 * 270.81144 * 10 9 8 40 40 H 1.08995 * 113.66698 * 139.93683 * 10 9 8 41 41 H 1.09007 * 113.61299 * 220.08986 * 11 10 9 42 42 H 1.09004 * 113.68758 * 89.20184 * 11 10 9 43 43 H 1.08997 * 109.47551 * 90.00057 * 16 15 12 44 44 H 1.09006 * 109.47419 * 209.99984 * 16 15 12 45 45 H 1.09000 * 109.47629 * 330.00268 * 16 15 12 46 46 H 1.09005 * 109.47420 * 59.99831 * 19 17 15 47 47 H 1.09008 * 109.47194 * 179.97438 * 19 17 15 48 48 H 1.09000 * 109.47684 * 299.99349 * 19 17 15 49 49 H 0.96994 * 120.00686 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 3.4673 -0.6620 -1.2842 6 7 2.0183 -0.6907 1.1961 7 6 1.5649 -2.0520 1.4923 8 6 2.7166 -3.0335 1.2660 9 6 2.7956 -3.5693 -0.1733 10 6 3.1392 -4.9386 0.4409 11 6 2.3944 -4.4724 1.7029 12 16 3.0827 0.0673 2.2133 13 8 3.6680 -0.9512 3.0130 14 8 3.8439 0.9564 1.4076 15 7 2.1912 1.0131 3.2395 16 6 1.7075 0.4631 4.5082 17 6 1.8862 2.3996 2.8784 18 1 2.3261 2.6276 1.9077 19 6 0.3692 2.5864 2.8080 20 6 2.4586 3.3272 3.9191 21 1 2.9962 2.9242 4.7646 22 6 2.2959 4.6904 3.7918 23 7 1.6408 5.1813 2.7625 24 14 3.0061 5.8402 5.0814 25 1 4.4785 5.6595 5.1488 26 1 2.6968 7.2459 4.7155 27 1 2.4082 5.5296 6.4047 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6344 -0.2384 -2.1385 32 1 1.7200 -1.7628 -1.2236 33 1 3.8604 -1.0999 -2.0515 34 1 1.2382 -2.1082 2.5306 35 1 0.7340 -2.3092 0.8354 36 1 3.6686 -2.6642 1.6474 37 1 1.8405 -3.5535 -0.6982 38 1 3.6077 -3.1354 -0.7567 39 1 4.2074 -5.0907 0.5954 40 1 2.6600 -5.7773 -0.0642 41 1 2.8830 -4.7664 2.6319 42 1 1.3292 -4.7035 1.6933 43 1 2.4505 0.6371 5.2865 44 1 0.7724 0.9512 4.7830 45 1 1.5397 -0.6084 4.3994 46 1 -0.0705 2.3586 3.7790 47 1 0.1422 3.6182 2.5397 48 1 -0.0449 1.9155 2.0553 49 1 1.5267 6.1403 2.6727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332076634.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:30 Heat of formation + Delta-G solvation = -125.576406 kcal Electronic energy + Delta-G solvation = -30373.060547 eV Core-core repulsion = 26462.031273 eV Total energy + Delta-G solvation = -3911.029273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.23735 -38.59886 -37.99975 -37.86763 -36.75727 -36.38987 -34.52860 -32.24466 -30.89585 -28.59966 -27.34512 -27.05035 -26.89817 -26.30513 -23.90003 -22.67590 -21.75146 -20.48971 -19.68139 -18.76309 -18.45906 -18.15729 -18.12234 -17.26078 -16.73904 -16.31476 -16.01941 -15.87396 -15.50476 -15.23893 -14.83530 -14.56410 -14.45757 -14.19507 -14.00015 -13.70445 -13.41112 -13.31339 -13.27203 -13.14462 -12.98791 -12.96955 -12.93144 -12.77325 -12.65853 -12.57312 -12.54480 -12.26382 -12.12964 -12.06877 -11.86081 -11.68641 -11.47794 -11.15156 -11.11153 -10.99236 -10.70370 -10.50845 -9.86504 -9.60686 -8.12201 -6.25926 -0.27131 1.40336 1.42956 1.49837 2.09618 2.41921 2.64562 3.15208 3.36186 3.44415 3.77241 3.83693 3.89585 4.03371 4.06830 4.15033 4.19636 4.22831 4.52249 4.54989 4.61454 4.65308 4.70071 4.72177 4.79165 4.85782 4.87310 4.95034 4.96998 4.98213 5.02598 5.11274 5.14071 5.15748 5.16401 5.23650 5.37159 5.42818 5.47524 5.60385 5.67719 5.74859 5.87766 5.94195 6.17464 6.31147 6.80737 7.04958 7.42631 8.91451 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.004252 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.261608 B = 6583.985373 C = 7020.993546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.058 0.942 4 C 0.066 3.934 5 O -0.588 6.588 6 N -0.983 5.983 7 C 0.132 3.868 8 C -0.148 4.148 9 C -0.127 4.127 10 C -0.139 4.139 11 C -0.127 4.127 12 S 2.787 3.213 13 O -1.009 7.009 14 O -1.014 7.014 15 N -1.002 6.002 16 C 0.107 3.893 17 C 0.276 3.724 18 H 0.018 0.982 19 C -0.135 4.135 20 C -0.543 4.543 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.953 3.047 25 H -0.282 1.282 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.389 0.611 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 -19.090 -8.280 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.077 0.923 4 C -0.013 4.013 5 O -0.395 6.395 6 N -0.823 5.823 7 C 0.008 3.992 8 C -0.169 4.169 9 C -0.165 4.165 10 C -0.176 4.176 11 C -0.165 4.165 12 S 2.798 3.202 13 O -0.992 6.992 14 O -0.998 6.998 15 N -0.843 5.843 16 C -0.039 4.039 17 C 0.171 3.829 18 H 0.036 0.964 19 C -0.194 4.194 20 C -0.583 4.583 21 H 0.069 0.931 22 C -0.180 4.180 23 N -0.550 5.550 24 Si 0.778 3.222 25 H -0.208 1.208 26 H -0.203 1.203 27 H -0.190 1.190 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.226 -18.676 -7.789 21.172 hybrid contribution 0.663 1.036 0.346 1.278 sum -5.563 -17.640 -7.443 19.938 Atomic orbital electron populations 1.22126 0.91375 1.04227 1.03538 1.21029 0.96212 0.95282 0.84165 0.92332 1.22762 0.81216 1.00927 0.96381 1.86665 1.20612 1.81321 1.50893 1.57768 1.64562 1.24249 1.35715 1.21520 0.97309 0.78511 1.01902 1.23151 0.99059 0.95715 0.98927 1.23073 1.02371 0.95874 0.95132 1.22804 1.00156 0.97526 0.97133 1.22899 1.01855 0.93802 0.97985 1.01573 0.74101 0.71907 0.72632 1.93472 1.76244 1.59104 1.70429 1.93537 1.69277 1.66755 1.70214 1.57752 1.72424 1.23175 1.30968 1.21284 1.00143 0.97665 0.84804 1.18346 0.93823 0.76087 0.94609 0.96399 1.21954 0.96098 1.02053 0.99276 1.21629 1.35509 0.91976 1.09165 0.93113 1.25606 0.95435 0.99353 0.97628 1.69951 1.41713 1.13284 1.30007 0.85701 0.78583 0.78014 0.79877 1.20772 1.20295 1.19019 0.89191 0.92250 0.89787 0.91280 0.90181 0.76277 0.91230 0.86359 0.91853 0.88006 0.92202 0.91452 0.89626 0.92461 0.87790 0.94604 0.90257 0.90452 0.94029 0.91518 0.93824 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.09 71.98 0.65 -2.44 16 2 C 0.14 3.90 2.81 44.99 0.13 4.03 16 3 H 0.06 2.18 7.21 -2.39 -0.02 2.16 16 4 C 0.07 1.42 6.04 71.98 0.43 1.85 16 5 O -0.59 -16.04 12.74 -148.98 -1.90 -17.94 16 6 N -0.98 -30.12 2.70 -493.40 -1.33 -31.46 16 7 C 0.13 3.01 4.49 86.38 0.39 3.40 16 8 C -0.15 -3.54 3.58 -10.27 -0.04 -3.58 16 9 C -0.13 -2.24 5.73 31.18 0.18 -2.06 16 10 C -0.14 -2.25 8.09 31.18 0.25 -2.00 16 11 C -0.13 -2.29 7.65 31.12 0.24 -2.05 16 12 S 2.79 119.53 5.88 -56.49 -0.33 119.20 16 13 O -1.01 -44.45 14.42 -128.00 -1.85 -46.29 16 14 O -1.01 -53.49 15.56 -128.00 -1.99 -55.48 16 15 N -1.00 -43.90 3.12 -520.48 -1.62 -45.52 16 16 C 0.11 3.92 9.53 127.77 1.22 5.13 16 17 C 0.28 14.09 2.62 44.25 0.12 14.20 16 18 H 0.02 1.06 6.91 -2.39 -0.02 1.05 16 19 C -0.13 -6.05 8.95 71.98 0.64 -5.41 16 20 C -0.54 -30.71 8.37 25.60 0.21 -30.49 16 21 H 0.05 2.88 7.65 -2.91 -0.02 2.86 16 22 C 0.02 1.11 5.30 84.66 0.45 1.56 16 23 N -0.91 -51.96 11.32 21.45 0.24 -51.71 16 24 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H 0.09 1.23 6.55 -2.39 -0.02 1.21 16 29 H 0.06 1.41 6.07 -2.39 -0.01 1.40 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.08 1.23 4.76 -2.39 -0.01 1.22 16 33 H 0.39 6.54 9.12 -74.06 -0.68 5.86 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.12 1.78 5.85 -2.39 -0.01 1.76 16 36 H 0.06 2.09 6.22 -2.38 -0.01 2.08 16 37 H 0.10 1.26 6.70 -2.39 -0.02 1.25 16 38 H 0.06 1.17 7.37 -2.39 -0.02 1.15 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.10 1.35 8.10 -2.39 -0.02 1.33 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.08 2.74 6.43 -2.38 -0.02 2.72 16 45 H 0.08 2.32 7.79 -2.39 -0.02 2.30 16 46 H 0.04 1.75 6.66 -2.38 -0.02 1.74 16 47 H 0.07 3.37 6.07 -2.38 -0.01 3.35 16 48 H 0.04 1.65 6.07 -2.39 -0.01 1.64 16 49 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -77.04 379.67 -1.60 -78.64 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.28 Total: 21.94 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.88 Total: -17.85 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -2.72 Total: -128.70 kcal Atomic # 8 Polarization: -113.98 SS G_CDS: -5.74 Total: -119.71 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 119.53 SS G_CDS: -0.33 Total: 119.20 kcal Total: -77.04 -1.60 -78.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076634.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.938 kcal (2) G-P(sol) polarization free energy of solvation -77.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds