Wall clock time and date at job start Tue Mar 31 2020 18:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47090 * 2 1 4 4 C 1.50696 * 109.47393 * 120.00214 * 2 1 3 5 5 H 1.07999 * 119.99779 * 119.99900 * 4 2 1 6 6 C 1.37871 * 120.00087 * 299.99731 * 4 2 1 7 7 N 1.31517 * 120.00021 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00009 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47289 * 89.99759 * 8 6 4 10 10 H 1.48501 * 109.47185 * 209.99903 * 8 6 4 11 11 H 1.48503 * 109.46975 * 329.99511 * 8 6 4 12 12 N 1.46503 * 109.47128 * 240.00322 * 2 1 3 13 13 C 1.46500 * 119.99808 * 299.99901 * 12 2 1 14 14 S 1.65600 * 120.00058 * 119.99423 * 12 2 1 15 15 O 1.42098 * 106.40388 * 203.54047 * 14 12 2 16 16 O 1.42105 * 106.40483 * 336.46167 * 14 12 2 17 17 N 1.65603 * 107.21858 * 90.00296 * 14 12 2 18 18 C 1.46498 * 120.00216 * 89.99501 * 17 14 12 19 19 C 1.53005 * 109.47150 * 92.88620 * 18 17 14 20 20 C 1.53783 * 113.61502 * 271.96923 * 19 18 17 21 21 C 1.53962 * 87.01314 * 220.04455 * 20 19 18 22 22 C 1.53773 * 113.61604 * 174.35717 * 19 18 17 23 23 C 1.46497 * 119.99817 * 270.00176 * 17 14 12 24 24 H 1.08991 * 109.47419 * 4.50628 * 23 17 14 25 25 C 1.53006 * 109.46902 * 124.50622 * 23 17 14 26 26 C 1.53000 * 109.46965 * 244.50272 * 23 17 14 27 27 O 1.42895 * 109.47056 * 61.40216 * 26 23 17 28 28 H 1.09002 * 109.47058 * 299.99865 * 1 2 3 29 29 H 1.09000 * 109.47135 * 59.99708 * 1 2 3 30 30 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99460 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46881 * 90.00076 * 13 12 2 33 33 H 1.09006 * 109.46706 * 209.99601 * 13 12 2 34 34 H 1.08993 * 109.47122 * 329.99896 * 13 12 2 35 35 H 1.09000 * 109.47503 * 212.89059 * 18 17 14 36 36 H 1.09002 * 109.46987 * 332.89468 * 18 17 14 37 37 H 1.09008 * 112.84128 * 43.16112 * 19 18 17 38 38 H 1.08997 * 113.61289 * 334.56077 * 20 19 18 39 39 H 1.09001 * 113.61393 * 105.46744 * 20 19 18 40 40 H 1.08997 * 113.53399 * 270.80813 * 21 20 19 41 41 H 1.09000 * 113.66074 * 139.93648 * 21 20 19 42 42 H 1.09008 * 113.61592 * 254.53418 * 22 19 18 43 43 H 1.09001 * 113.61924 * 25.34719 * 22 19 18 44 44 H 1.08992 * 109.47576 * 59.99969 * 25 23 17 45 45 H 1.09007 * 109.46643 * 179.97438 * 25 23 17 46 46 H 1.09002 * 109.47118 * 299.99348 * 25 23 17 47 47 H 1.08998 * 109.46939 * 181.40535 * 26 23 17 48 48 H 1.09002 * 109.47444 * 301.39881 * 26 23 17 49 49 H 0.96699 * 113.99852 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 2.1374 -0.8597 3.5564 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5644 -3.5260 16 8 2.6902 1.4975 -2.1193 17 7 4.5437 -0.1040 -1.8182 18 6 5.3068 -1.2472 -2.3251 19 6 6.0732 -0.8316 -3.5825 20 6 5.2654 -1.0002 -4.8802 21 6 6.5660 -1.5085 -5.5287 22 6 7.0162 -1.9220 -4.1177 23 6 5.1724 0.8460 -0.8971 24 1 4.4335 1.5766 -0.5684 25 6 5.7199 0.0928 0.3170 26 6 6.3188 1.5654 -1.6105 27 8 5.8027 2.2952 -2.7254 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5281 4.4374 32 1 0.7375 -2.1443 -1.9994 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4710 35 1 6.0118 -1.5801 -1.5633 36 1 4.6237 -2.0610 -2.5684 37 1 6.5459 0.1459 -3.4862 38 1 4.4854 -1.7586 -4.8135 39 1 4.9074 -0.0588 -5.2971 40 1 7.1730 -0.7158 -5.9660 41 1 6.4177 -2.3510 -6.2042 42 1 8.0697 -1.7238 -3.9199 43 1 6.7166 -2.9328 -3.8410 44 1 6.4589 -0.6379 -0.0116 45 1 6.1881 0.7996 1.0021 46 1 4.9032 -0.4197 0.8253 47 1 6.8025 2.2541 -0.9178 48 1 7.0456 0.8325 -1.9610 49 1 6.4755 2.7775 -3.2252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332076636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:34 Heat of formation + Delta-G solvation = -94.320720 kcal Electronic energy + Delta-G solvation = -30632.338986 eV Core-core repulsion = 26722.665061 eV Total energy + Delta-G solvation = -3909.673925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.20790 -37.45613 -36.57399 -36.31333 -35.25492 -35.14186 -32.51444 -30.99219 -29.99640 -27.59327 -25.93209 -25.65727 -25.39132 -25.03018 -22.83522 -21.04237 -20.40800 -19.37226 -18.42115 -17.43257 -17.13034 -16.96581 -16.45325 -15.90189 -15.31334 -15.23052 -14.87209 -14.41962 -14.30632 -13.74145 -13.50515 -13.20073 -13.00275 -12.80552 -12.54122 -12.33338 -12.27091 -12.20102 -12.06404 -11.91118 -11.83123 -11.75208 -11.41870 -11.39510 -11.32287 -11.16923 -10.97380 -10.90215 -10.61955 -10.55053 -10.33589 -10.22969 -10.13114 -9.98686 -9.79440 -9.57937 -9.41512 -8.68703 -8.60204 -8.04090 -6.18531 -4.18978 1.25501 3.22656 3.35222 3.38523 3.44886 4.13538 4.32500 4.34106 4.70811 4.76461 4.84141 4.92104 4.99107 5.13824 5.19062 5.28555 5.34425 5.48452 5.50311 5.60441 5.64249 5.73215 5.78124 5.80278 5.90406 5.92017 5.95878 6.06831 6.11946 6.16186 6.20369 6.27946 6.31386 6.40784 6.41684 6.56187 6.61037 6.67874 6.71057 6.76618 6.86668 7.02082 7.32025 7.42211 7.66022 7.74640 8.41817 8.83935 9.43373 10.93376 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.004998 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.694707 B = 5601.399309 C = 6006.104191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.054 0.946 4 C -0.523 4.523 5 H 0.083 0.917 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.873 3.127 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.261 1.261 12 N -0.989 5.989 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.987 6.987 16 O -0.977 6.977 17 N -0.988 5.988 18 C 0.136 3.864 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.134 4.134 23 C 0.154 3.846 24 H 0.103 0.897 25 C -0.163 4.163 26 C 0.065 3.935 27 O -0.560 6.560 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.051 0.949 49 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -0.485 -11.581 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.072 0.928 4 C -0.562 4.562 5 H 0.101 0.899 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.830 5.830 13 C -0.040 4.040 14 S 2.793 3.207 15 O -0.971 6.971 16 O -0.961 6.961 17 N -0.824 5.824 18 C 0.010 3.990 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.184 4.184 22 C -0.172 4.172 23 C 0.048 3.952 24 H 0.120 0.880 25 C -0.221 4.221 26 C -0.015 4.015 27 O -0.364 6.364 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.392 -0.257 -11.911 15.170 hybrid contribution 0.096 0.774 0.541 0.949 sum 9.488 0.517 -11.370 14.817 Atomic orbital electron populations 1.22413 0.98987 1.01269 0.99071 1.19054 0.90905 0.93316 0.83385 0.92822 1.21186 1.32590 1.14264 0.88197 0.89856 1.24858 0.95474 0.96429 0.95772 1.69873 1.45226 1.40016 0.97943 0.87071 0.80955 0.84130 0.77517 1.20354 1.22205 1.18617 1.57648 1.64866 1.21485 1.38995 1.21216 0.98919 0.81840 1.02058 1.01880 0.72385 0.73280 0.73141 1.93531 1.85959 1.76250 1.41383 1.93565 1.83791 1.32119 1.86644 1.57916 1.29934 1.34870 1.59708 1.21209 0.95688 0.87394 0.94707 1.23239 0.97537 0.99653 0.95023 1.22968 0.95793 1.02114 0.95350 1.22873 0.98609 1.00668 0.96255 1.22881 0.98749 0.99021 0.96580 1.20786 0.95606 0.90264 0.88587 0.87951 1.22124 1.02867 1.00612 0.96514 1.22708 0.96216 0.94260 0.88311 1.86650 1.38106 1.67650 1.43982 0.93399 0.94815 0.92325 0.92506 0.93953 0.93090 0.89879 0.90419 0.90630 0.88325 0.88990 0.91922 0.90859 0.91882 0.91987 0.90140 0.92697 0.91919 0.88860 0.93239 0.93106 0.78414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.67 37.16 0.32 -3.14 16 2 C 0.24 5.50 2.21 -69.08 -0.15 5.34 16 3 H 0.05 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.52 -13.26 8.57 -34.44 -0.30 -13.55 16 5 H 0.08 2.23 7.58 -52.49 -0.40 1.84 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -25.24 13.96 55.43 0.77 -24.46 16 8 Si 0.87 21.01 24.37 -169.99 -4.14 16.86 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.99 -20.02 3.12 -115.85 -0.36 -20.38 16 13 C 0.11 1.85 9.28 59.85 0.56 2.41 16 14 S 2.78 54.90 5.99 -107.50 -0.64 54.25 16 15 O -0.99 -19.48 13.85 -57.17 -0.79 -20.27 16 16 O -0.98 -22.50 15.32 -57.17 -0.88 -23.38 16 17 N -0.99 -16.11 2.67 -107.30 -0.29 -16.40 16 18 C 0.14 1.84 4.82 -4.04 -0.02 1.82 16 19 C -0.13 -1.65 3.50 -89.81 -0.31 -1.97 16 20 C -0.12 -1.67 6.11 -25.82 -0.16 -1.83 16 21 C -0.15 -1.54 8.09 -25.83 -0.21 -1.75 16 22 C -0.13 -1.34 7.64 -25.93 -0.20 -1.54 16 23 C 0.15 2.43 2.89 -67.93 -0.20 2.23 16 24 H 0.10 1.90 7.00 -51.93 -0.36 1.54 16 25 C -0.16 -2.37 9.07 37.16 0.34 -2.04 16 26 C 0.06 0.81 5.68 37.16 0.21 1.02 16 27 O -0.56 -7.69 12.83 -35.23 -0.45 -8.14 16 28 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.78 7.40 -51.93 -0.38 0.39 16 34 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 35 H 0.08 0.93 6.22 -51.93 -0.32 0.61 16 36 H 0.08 1.03 6.99 -51.93 -0.36 0.66 16 37 H 0.10 1.20 4.76 -51.92 -0.25 0.95 16 38 H 0.09 1.35 7.13 -51.93 -0.37 0.98 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 46 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.55 6.02 -51.93 -0.31 0.24 16 49 H 0.37 3.19 9.12 45.56 0.42 3.61 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -31.68 377.00 -8.65 -40.33 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.34 Total: 6.90 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.21 Total: -11.00 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.13 Total: -61.24 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.12 Total: -51.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.14 Total: 16.86 kcal Atomic # 16 Polarization: 54.90 SS G_CDS: -0.64 Total: 54.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.68 -8.65 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.986 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds