Wall clock time and date at job start Tue Mar 31 2020 18:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47090 * 2 1 4 4 C 1.50696 * 109.47393 * 120.00214 * 2 1 3 5 5 H 1.07999 * 119.99779 * 119.99900 * 4 2 1 6 6 C 1.37871 * 120.00087 * 299.99731 * 4 2 1 7 7 N 1.31517 * 120.00021 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00009 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47289 * 89.99759 * 8 6 4 10 10 H 1.48501 * 109.47185 * 209.99903 * 8 6 4 11 11 H 1.48503 * 109.46975 * 329.99511 * 8 6 4 12 12 N 1.46503 * 109.47128 * 240.00322 * 2 1 3 13 13 C 1.46500 * 119.99808 * 299.99901 * 12 2 1 14 14 S 1.65600 * 120.00058 * 119.99423 * 12 2 1 15 15 O 1.42098 * 106.40388 * 203.54047 * 14 12 2 16 16 O 1.42105 * 106.40483 * 336.46167 * 14 12 2 17 17 N 1.65603 * 107.21858 * 90.00296 * 14 12 2 18 18 C 1.46498 * 120.00216 * 89.99501 * 17 14 12 19 19 C 1.53005 * 109.47150 * 92.88620 * 18 17 14 20 20 C 1.53783 * 113.61502 * 271.96923 * 19 18 17 21 21 C 1.53962 * 87.01314 * 220.04455 * 20 19 18 22 22 C 1.53773 * 113.61604 * 174.35717 * 19 18 17 23 23 C 1.46497 * 119.99817 * 270.00176 * 17 14 12 24 24 H 1.08991 * 109.47419 * 4.50628 * 23 17 14 25 25 C 1.53006 * 109.46902 * 124.50622 * 23 17 14 26 26 C 1.53000 * 109.46965 * 244.50272 * 23 17 14 27 27 O 1.42895 * 109.47056 * 61.40216 * 26 23 17 28 28 H 1.09002 * 109.47058 * 299.99865 * 1 2 3 29 29 H 1.09000 * 109.47135 * 59.99708 * 1 2 3 30 30 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 31 31 H 0.97005 * 119.99460 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46881 * 90.00076 * 13 12 2 33 33 H 1.09006 * 109.46706 * 209.99601 * 13 12 2 34 34 H 1.08993 * 109.47122 * 329.99896 * 13 12 2 35 35 H 1.09000 * 109.47503 * 212.89059 * 18 17 14 36 36 H 1.09002 * 109.46987 * 332.89468 * 18 17 14 37 37 H 1.09008 * 112.84128 * 43.16112 * 19 18 17 38 38 H 1.08997 * 113.61289 * 334.56077 * 20 19 18 39 39 H 1.09001 * 113.61393 * 105.46744 * 20 19 18 40 40 H 1.08997 * 113.53399 * 270.80813 * 21 20 19 41 41 H 1.09000 * 113.66074 * 139.93648 * 21 20 19 42 42 H 1.09008 * 113.61592 * 254.53418 * 22 19 18 43 43 H 1.09001 * 113.61924 * 25.34719 * 22 19 18 44 44 H 1.08992 * 109.47576 * 59.99969 * 25 23 17 45 45 H 1.09007 * 109.46643 * 179.97438 * 25 23 17 46 46 H 1.09002 * 109.47118 * 299.99348 * 25 23 17 47 47 H 1.08998 * 109.46939 * 181.40535 * 26 23 17 48 48 H 1.09002 * 109.47444 * 301.39881 * 26 23 17 49 49 H 0.96699 * 113.99852 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 2.1374 -0.8597 3.5564 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5644 -3.5260 16 8 2.6902 1.4975 -2.1193 17 7 4.5437 -0.1040 -1.8182 18 6 5.3068 -1.2472 -2.3251 19 6 6.0732 -0.8316 -3.5825 20 6 5.2654 -1.0002 -4.8802 21 6 6.5660 -1.5085 -5.5287 22 6 7.0162 -1.9220 -4.1177 23 6 5.1724 0.8460 -0.8971 24 1 4.4335 1.5766 -0.5684 25 6 5.7199 0.0928 0.3170 26 6 6.3188 1.5654 -1.6105 27 8 5.8027 2.2952 -2.7254 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9034 -0.5281 4.4374 32 1 0.7375 -2.1443 -1.9994 33 1 2.4629 -2.5817 -1.9866 34 1 1.5295 -2.5968 -0.4710 35 1 6.0118 -1.5801 -1.5633 36 1 4.6237 -2.0610 -2.5684 37 1 6.5459 0.1459 -3.4862 38 1 4.4854 -1.7586 -4.8135 39 1 4.9074 -0.0588 -5.2971 40 1 7.1730 -0.7158 -5.9660 41 1 6.4177 -2.3510 -6.2042 42 1 8.0697 -1.7238 -3.9199 43 1 6.7166 -2.9328 -3.8410 44 1 6.4589 -0.6379 -0.0116 45 1 6.1881 0.7996 1.0021 46 1 4.9032 -0.4197 0.8253 47 1 6.8025 2.2541 -0.9178 48 1 7.0456 0.8325 -1.9610 49 1 6.4755 2.7775 -3.2252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332076636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:33 Heat of formation + Delta-G solvation = -118.586689 kcal Electronic energy + Delta-G solvation = -30633.391237 eV Core-core repulsion = 26722.665061 eV Total energy + Delta-G solvation = -3910.726176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.21911 -38.64860 -38.12370 -37.96170 -36.78394 -36.37127 -34.48724 -32.16701 -31.78180 -28.70153 -27.30908 -26.97170 -26.92193 -26.30452 -23.81864 -22.72707 -21.78911 -20.33124 -19.80416 -19.01780 -18.60412 -18.29965 -18.14439 -17.36727 -16.84614 -16.27530 -16.01998 -15.89409 -15.52046 -15.25312 -14.92544 -14.64637 -14.56023 -14.16065 -14.05106 -13.86790 -13.73717 -13.45958 -13.40180 -13.22672 -13.11353 -13.03855 -12.93245 -12.87320 -12.80509 -12.72681 -12.47084 -12.28005 -12.08210 -11.99307 -11.70151 -11.51263 -11.41892 -11.30456 -11.17011 -10.94683 -10.74862 -10.72385 -9.88714 -9.65566 -8.27023 -6.28532 -0.27816 1.29302 1.38681 1.45736 1.99857 2.32226 2.61193 3.07712 3.32116 3.41634 3.71910 3.88931 3.92207 4.00922 4.07304 4.10139 4.22034 4.23980 4.41835 4.45848 4.53993 4.58918 4.62584 4.65410 4.69176 4.73578 4.81294 4.82666 4.88386 4.94702 4.96919 5.04654 5.07533 5.13875 5.19742 5.21406 5.28117 5.30561 5.48066 5.49803 5.51722 5.56424 5.73023 5.77263 5.98654 6.37529 6.74880 7.00380 7.35837 8.87620 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.004998 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.694707 B = 5601.399309 C = 6006.104191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.242 3.758 3 H 0.035 0.965 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.035 3.965 7 N -0.931 5.931 8 Si 0.915 3.085 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.996 5.996 13 C 0.101 3.899 14 S 2.788 3.212 15 O -0.990 6.990 16 O -1.014 7.014 17 N -0.983 5.983 18 C 0.128 3.872 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.121 4.121 23 C 0.146 3.854 24 H 0.065 0.935 25 C -0.152 4.152 26 C 0.070 3.930 27 O -0.587 6.587 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.266 0.734 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -0.836 -12.760 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.571 5.571 8 Si 0.744 3.256 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.836 5.836 13 C -0.044 4.044 14 S 2.799 3.201 15 O -0.974 6.974 16 O -0.998 6.998 17 N -0.822 5.822 18 C 0.003 3.997 19 C -0.154 4.154 20 C -0.177 4.177 21 C -0.174 4.174 22 C -0.159 4.159 23 C 0.040 3.960 24 H 0.083 0.917 25 C -0.211 4.211 26 C -0.009 4.009 27 O -0.395 6.395 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.079 -0.614 -13.122 17.184 hybrid contribution -0.370 0.843 0.826 1.237 sum 10.708 0.229 -12.296 16.307 Atomic orbital electron populations 1.22386 0.97769 1.02204 0.99508 1.18809 0.91853 0.92277 0.83512 0.94720 1.21255 1.31131 1.13071 0.89038 0.91989 1.25399 0.96752 0.98553 0.95710 1.69967 1.47071 1.41662 0.98372 0.86380 0.80358 0.81668 0.77239 1.19028 1.22224 1.18660 1.57635 1.65633 1.22454 1.37875 1.21376 1.00522 0.80447 1.02061 1.01529 0.73090 0.72420 0.73038 1.93524 1.86404 1.76030 1.41468 1.93512 1.84767 1.34397 1.87116 1.57680 1.28757 1.35917 1.59824 1.21505 0.95870 0.86309 0.96002 1.23261 0.97773 1.00915 0.93493 1.22983 0.96885 1.00657 0.97136 1.22850 0.96598 1.01136 0.96862 1.22842 0.99312 0.98396 0.95357 1.20901 0.95872 0.89883 0.89389 0.91653 1.22001 1.01929 1.01139 0.96041 1.22650 0.94782 0.95014 0.88423 1.86596 1.40061 1.68255 1.44608 0.94011 0.93294 0.91176 0.92508 0.92532 0.90932 0.90862 0.88317 0.90912 0.87856 0.90705 0.94242 0.89742 0.91048 0.89881 0.89494 0.89918 0.90540 0.93017 0.91204 0.90548 0.75883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.87 8.67 71.98 0.62 -6.25 16 2 C 0.24 11.25 2.21 44.24 0.10 11.35 16 3 H 0.04 1.77 5.97 -2.39 -0.01 1.75 16 4 C -0.51 -26.11 8.57 25.60 0.22 -25.89 16 5 H 0.06 3.42 7.58 -2.91 -0.02 3.40 16 6 C 0.04 1.91 5.45 84.65 0.46 2.37 16 7 N -0.93 -53.56 13.96 21.45 0.30 -53.26 16 8 Si 0.92 43.38 24.37 68.60 1.67 45.05 16 9 H -0.26 -11.93 6.87 99.48 0.68 -11.25 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.26 -12.34 6.53 99.48 0.65 -11.69 16 12 N -1.00 -40.47 3.12 -520.44 -1.62 -42.09 16 13 C 0.10 3.49 9.28 127.77 1.19 4.67 16 14 S 2.79 110.78 5.99 -56.49 -0.34 110.45 16 15 O -0.99 -38.99 13.85 -128.00 -1.77 -40.76 16 16 O -1.01 -47.77 15.32 -128.00 -1.96 -49.73 16 17 N -0.98 -31.56 2.67 -493.39 -1.32 -32.88 16 18 C 0.13 3.23 4.82 86.38 0.42 3.65 16 19 C -0.13 -2.98 3.50 -10.27 -0.04 -3.01 16 20 C -0.14 -3.57 6.11 31.18 0.19 -3.38 16 21 C -0.14 -2.50 8.09 31.18 0.25 -2.25 16 22 C -0.12 -1.99 7.64 31.12 0.24 -1.75 16 23 C 0.15 4.53 2.89 44.99 0.13 4.66 16 24 H 0.07 2.51 7.00 -2.39 -0.02 2.50 16 25 C -0.15 -4.33 9.07 71.98 0.65 -3.67 16 26 C 0.07 1.61 5.68 71.98 0.41 2.02 16 27 O -0.59 -15.30 12.83 -148.98 -1.91 -17.21 16 28 H 0.04 1.83 3.27 -2.39 -0.01 1.83 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 2.80 7.67 -2.39 -0.02 2.78 16 31 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.07 2.15 7.40 -2.38 -0.02 2.13 16 34 H 0.07 2.66 7.02 -2.39 -0.02 2.64 16 35 H 0.10 2.07 6.22 -2.39 -0.01 2.06 16 36 H 0.07 1.88 6.99 -2.39 -0.02 1.86 16 37 H 0.10 2.21 4.76 -2.38 -0.01 2.20 16 38 H 0.07 2.16 7.13 -2.39 -0.02 2.14 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 44 H 0.08 1.84 6.56 -2.39 -0.02 1.82 16 45 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.08 1.36 6.02 -2.39 -0.01 1.35 16 49 H 0.39 5.95 9.12 -74.06 -0.68 5.28 16 Total: -1.00 -69.79 377.00 -1.92 -71.71 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.20 Total: 26.20 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.84 Total: -17.47 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -2.64 Total: -128.23 kcal Atomic # 8 Polarization: -102.05 SS G_CDS: -5.64 Total: -107.70 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.67 Total: 45.05 kcal Atomic # 16 Polarization: 110.78 SS G_CDS: -0.34 Total: 110.45 kcal Total: -69.79 -1.92 -71.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332076636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.877 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds