Wall clock time and date at job start Tue Mar 31 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46974 * 2 1 4 4 C 1.46504 * 119.99750 * 86.84299 * 3 2 1 5 5 C 1.54266 * 110.02935 * 298.14865 * 4 3 2 6 6 C 1.54964 * 104.16222 * 95.75844 * 5 4 3 7 7 C 1.54884 * 102.77851 * 37.88186 * 6 5 4 8 8 C 1.53877 * 110.03399 * 55.36618 * 4 3 2 9 9 S 1.65598 * 120.00324 * 266.84252 * 3 2 1 10 10 O 1.42093 * 106.40346 * 23.53964 * 9 3 2 11 11 O 1.42103 * 106.40244 * 156.46515 * 9 3 2 12 12 N 1.65602 * 107.21556 * 269.99832 * 9 3 2 13 13 C 1.46504 * 120.00239 * 269.99917 * 12 9 3 14 14 C 1.50702 * 109.46946 * 95.00039 * 13 12 9 15 15 H 1.07997 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99883 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00191 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47218 * 89.99717 * 18 16 14 20 20 H 1.48500 * 109.47221 * 209.99835 * 18 16 14 21 21 H 1.48501 * 109.47130 * 329.99719 * 18 16 14 22 22 C 1.46506 * 119.99791 * 90.00244 * 12 9 3 23 23 C 1.52992 * 109.47249 * 94.99999 * 22 12 9 24 24 O 1.42897 * 109.47398 * 64.99618 * 23 22 12 25 25 C 1.42904 * 113.99986 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.46928 * 293.50194 * 1 2 3 27 27 H 1.09003 * 109.47119 * 53.50271 * 1 2 3 28 28 H 1.08997 * 109.46940 * 173.50565 * 1 2 3 29 29 H 1.08997 * 109.47051 * 240.00889 * 2 1 3 30 30 H 1.09000 * 109.47404 * 120.00221 * 2 1 3 31 31 H 1.08993 * 110.01931 * 176.75598 * 4 3 2 32 32 H 1.09002 * 110.48440 * 214.39841 * 5 4 3 33 33 H 1.09003 * 110.49046 * 337.04207 * 5 4 3 34 34 H 1.09004 * 110.71719 * 279.56895 * 6 5 4 35 35 H 1.08998 * 110.92790 * 156.29644 * 6 5 4 36 36 H 1.09004 * 110.48869 * 203.41133 * 7 6 5 37 37 H 1.09001 * 110.60069 * 80.82478 * 7 6 5 38 38 H 1.08997 * 110.03010 * 359.94873 * 8 4 3 39 39 H 1.08995 * 110.03123 * 121.38535 * 8 4 3 40 40 H 1.08997 * 109.47047 * 215.00197 * 13 12 9 41 41 H 1.08998 * 109.46669 * 335.00129 * 13 12 9 42 42 H 0.96991 * 120.00257 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.46580 * 214.99992 * 22 12 9 44 44 H 1.08999 * 109.46669 * 334.99732 * 22 12 9 45 45 H 1.08999 * 109.47443 * 185.00263 * 23 22 12 46 46 H 1.09003 * 109.47230 * 304.99798 * 23 22 12 47 47 H 1.08996 * 109.47328 * 299.99995 * 25 24 23 48 48 H 1.09001 * 109.46919 * 60.00707 * 25 24 23 49 49 H 1.09005 * 109.46812 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1966 2.0951 1.2669 5 6 0.8427 2.2259 1.9947 6 6 0.8269 1.0326 2.9833 7 6 2.2987 0.9639 3.4609 8 6 3.1220 1.2928 2.1984 9 16 2.3688 2.1356 -1.4319 10 8 1.6130 1.4678 -2.4328 11 8 2.2696 3.5315 -1.1848 12 7 3.9617 1.8325 -1.7686 13 6 4.9995 2.7460 -1.2840 14 6 5.5505 2.2331 0.0215 15 1 5.1663 1.3181 0.4475 16 6 6.5457 2.9315 0.6716 17 7 7.0262 2.4843 1.8112 18 14 7.2107 4.5139 -0.0655 19 1 6.4180 5.6650 0.4360 20 1 8.6328 4.6836 0.3270 21 1 7.1100 4.4510 -1.5458 22 6 4.3330 0.6509 -2.5510 23 6 4.4736 1.0383 -4.0244 24 8 5.5639 1.9496 -4.1753 25 6 5.7828 2.3761 -5.5215 26 1 -0.3633 0.4098 0.9425 27 1 -0.3633 0.6113 -0.8261 28 1 -0.3633 -1.0211 -0.1162 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.6182 3.0831 1.0823 32 1 0.7905 3.1703 2.5363 33 1 0.0189 2.1457 1.2854 34 1 0.5432 0.1124 2.4725 35 1 0.1578 1.2297 3.8208 36 1 2.5366 -0.0369 3.8214 37 1 2.4839 1.7031 4.2403 38 1 3.4377 0.3719 1.7082 39 1 3.9927 1.8915 2.4658 40 1 5.8024 2.8061 -2.0187 41 1 4.5701 3.7364 -1.1332 42 1 7.7261 2.9758 2.2687 43 1 5.2819 0.2574 -2.1866 44 1 3.5601 -0.1107 -2.4477 45 1 4.6622 0.1444 -4.6188 46 1 3.5534 1.5133 -4.3646 47 1 5.9989 1.5098 -6.1466 48 1 4.8898 2.8787 -5.8932 49 1 6.6264 3.0658 -5.5515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336914727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:56 Heat of formation + Delta-G solvation = -121.161749 kcal Electronic energy + Delta-G solvation = -30478.804848 eV Core-core repulsion = 26567.967008 eV Total energy + Delta-G solvation = -3910.837839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.71047 -37.82404 -36.75154 -35.42428 -35.23210 -34.20764 -32.46358 -30.48589 -29.74869 -28.29155 -27.18027 -26.54315 -25.76795 -22.72448 -22.54623 -21.57360 -20.48222 -19.62262 -18.24589 -17.46952 -17.02863 -16.72083 -16.11152 -15.78864 -15.62154 -15.17135 -14.74827 -14.59344 -14.17750 -14.04759 -13.68791 -13.50403 -13.14133 -12.65950 -12.57998 -12.47447 -12.33653 -12.22528 -12.02619 -11.78918 -11.62972 -11.47668 -11.31910 -11.18395 -11.14835 -10.93961 -10.88967 -10.72808 -10.71023 -10.62480 -10.35636 -10.25630 -10.20301 -10.10207 -9.96605 -9.44979 -9.37147 -8.62708 -8.52003 -7.99339 -6.06774 -4.04475 1.24104 3.33529 3.39804 3.46544 3.47731 4.06543 4.08929 4.45447 4.88016 4.93321 5.02850 5.14660 5.23019 5.27441 5.33591 5.35560 5.47907 5.49792 5.52552 5.59169 5.63086 5.71213 5.77262 5.84074 5.85739 5.90882 5.92650 5.98786 6.03739 6.07664 6.21816 6.22503 6.25592 6.28170 6.44612 6.47233 6.53709 6.65654 6.91211 7.07792 7.10462 7.16730 7.32887 7.45744 7.53778 7.69385 8.51613 8.98097 9.56062 11.04885 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.006799 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.606492 B = 4117.182807 C = 5994.635105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 N -0.992 5.992 4 C 0.156 3.844 5 C -0.137 4.137 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.125 4.125 9 S 2.781 3.219 10 O -0.998 6.998 11 O -0.981 6.981 12 N -0.980 5.980 13 C 0.214 3.786 14 C -0.533 4.533 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.895 5.895 18 Si 0.861 3.139 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.136 3.864 23 C 0.043 3.957 24 O -0.374 6.374 25 C 0.030 3.970 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.035 0.965 42 H 0.262 0.738 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -5.669 -4.174 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.002 4.002 3 N -0.830 5.830 4 C 0.049 3.951 5 C -0.177 4.177 6 C -0.166 4.166 7 C -0.161 4.161 8 C -0.164 4.164 9 S 2.791 3.209 10 O -0.983 6.983 11 O -0.965 6.965 12 N -0.820 5.820 13 C 0.090 3.910 14 C -0.573 4.573 15 H 0.104 0.896 16 C -0.124 4.124 17 N -0.534 5.534 18 Si 0.688 3.312 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.185 1.185 22 C 0.009 3.991 23 C -0.036 4.036 24 O -0.292 6.292 25 C -0.067 4.067 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.818 -5.038 -4.420 11.888 hybrid contribution 0.681 0.531 -0.334 0.926 sum -9.137 -4.507 -4.753 11.243 Atomic orbital electron populations 1.22491 0.96678 1.01862 1.02856 1.21067 0.93879 0.82600 1.02617 1.58034 1.79689 1.23015 1.22277 1.21421 0.94547 0.96126 0.82963 1.22874 0.97931 0.98552 0.98301 1.22650 0.97035 0.98593 0.98279 1.22372 0.94581 1.00889 0.98288 1.22497 0.98619 1.01193 0.94087 1.01892 0.73002 0.73281 0.72723 1.93523 1.70310 1.76820 1.57606 1.93551 1.86453 1.30927 1.85572 1.57488 1.24901 1.34601 1.65003 1.19660 0.87194 0.88182 0.95940 1.21534 1.20348 1.11069 1.04300 0.89610 1.24766 0.96003 0.97097 0.94584 1.69876 1.28234 1.39433 1.15824 0.87057 0.78404 0.84820 0.80869 1.20082 1.21367 1.18537 1.21093 1.02645 0.87138 0.88221 1.23128 0.89648 0.92532 0.98250 1.88060 1.51273 1.63944 1.25921 1.22712 1.00836 0.98779 0.84379 0.91305 0.92304 0.92221 0.91202 0.90214 0.88011 0.91116 0.91139 0.91249 0.92375 0.92305 0.91983 0.91023 0.88895 0.92987 0.94679 0.92779 0.88904 0.90163 0.92963 0.93245 0.94564 0.94551 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.08 37.16 0.34 -1.86 16 2 C 0.12 1.71 4.99 -4.04 -0.02 1.69 16 3 N -0.99 -16.67 2.74 -106.11 -0.29 -16.96 16 4 C 0.16 2.66 3.31 -66.81 -0.22 2.44 16 5 C -0.14 -1.93 5.77 -25.03 -0.14 -2.08 16 6 C -0.13 -1.56 6.07 -24.70 -0.15 -1.71 16 7 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 8 C -0.13 -2.15 5.13 -25.61 -0.13 -2.28 16 9 S 2.78 54.66 6.01 -107.50 -0.65 54.01 16 10 O -1.00 -19.53 15.98 -57.17 -0.91 -20.44 16 11 O -0.98 -22.37 15.31 -57.17 -0.88 -23.24 16 12 N -0.98 -19.70 2.81 -115.66 -0.33 -20.02 16 13 C 0.21 5.02 4.34 -5.19 -0.02 4.99 16 14 C -0.53 -13.62 9.93 -34.44 -0.34 -13.96 16 15 H 0.09 2.26 7.03 -52.49 -0.37 1.89 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -25.29 13.96 55.43 0.77 -24.51 16 18 Si 0.86 21.01 27.47 -169.99 -4.67 16.35 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.14 2.30 5.79 -4.04 -0.02 2.28 16 23 C 0.04 0.68 6.28 37.15 0.23 0.91 16 24 O -0.37 -6.58 9.02 -35.23 -0.32 -6.90 16 25 C 0.03 0.40 11.01 101.05 1.11 1.51 16 26 H 0.07 0.79 4.12 -51.93 -0.21 0.57 16 27 H 0.06 0.80 8.00 -51.93 -0.42 0.39 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.92 7.36 -51.93 -0.38 0.54 16 30 H 0.08 1.01 5.82 -51.93 -0.30 0.71 16 31 H 0.10 2.03 7.01 -51.93 -0.36 1.66 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.96 6.08 -51.93 -0.32 0.65 16 34 H 0.07 0.79 5.28 -51.93 -0.27 0.52 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.26 6.51 -51.93 -0.34 0.92 16 39 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 40 H 0.05 1.26 5.66 -51.93 -0.29 0.97 16 41 H 0.04 0.88 6.34 -51.93 -0.33 0.55 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.09 1.62 8.11 -51.93 -0.42 1.19 16 44 H 0.08 1.15 7.29 -51.93 -0.38 0.77 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -30.81 380.55 -9.39 -40.20 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.22 Total: 3.73 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 0.36 Total: -7.93 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.16 Total: -61.50 kcal Atomic # 8 Polarization: -48.48 SS G_CDS: -2.11 Total: -50.58 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.65 Total: 54.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.81 -9.39 -40.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336914727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.967 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds