Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46974 * 2 1 4 4 C 1.46504 * 119.99750 * 86.84299 * 3 2 1 5 5 C 1.54266 * 110.02935 * 298.14865 * 4 3 2 6 6 C 1.54964 * 104.16222 * 95.75844 * 5 4 3 7 7 C 1.54884 * 102.77851 * 37.88186 * 6 5 4 8 8 C 1.53877 * 110.03399 * 55.36618 * 4 3 2 9 9 S 1.65598 * 120.00324 * 266.84252 * 3 2 1 10 10 O 1.42093 * 106.40346 * 23.53964 * 9 3 2 11 11 O 1.42103 * 106.40244 * 156.46515 * 9 3 2 12 12 N 1.65602 * 107.21556 * 269.99832 * 9 3 2 13 13 C 1.46504 * 120.00239 * 269.99917 * 12 9 3 14 14 C 1.50702 * 109.46946 * 95.00039 * 13 12 9 15 15 H 1.07997 * 119.99812 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99883 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00191 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47218 * 89.99717 * 18 16 14 20 20 H 1.48500 * 109.47221 * 209.99835 * 18 16 14 21 21 H 1.48501 * 109.47130 * 329.99719 * 18 16 14 22 22 C 1.46506 * 119.99791 * 90.00244 * 12 9 3 23 23 C 1.52992 * 109.47249 * 94.99999 * 22 12 9 24 24 O 1.42897 * 109.47398 * 64.99618 * 23 22 12 25 25 C 1.42904 * 113.99986 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.46928 * 293.50194 * 1 2 3 27 27 H 1.09003 * 109.47119 * 53.50271 * 1 2 3 28 28 H 1.08997 * 109.46940 * 173.50565 * 1 2 3 29 29 H 1.08997 * 109.47051 * 240.00889 * 2 1 3 30 30 H 1.09000 * 109.47404 * 120.00221 * 2 1 3 31 31 H 1.08993 * 110.01931 * 176.75598 * 4 3 2 32 32 H 1.09002 * 110.48440 * 214.39841 * 5 4 3 33 33 H 1.09003 * 110.49046 * 337.04207 * 5 4 3 34 34 H 1.09004 * 110.71719 * 279.56895 * 6 5 4 35 35 H 1.08998 * 110.92790 * 156.29644 * 6 5 4 36 36 H 1.09004 * 110.48869 * 203.41133 * 7 6 5 37 37 H 1.09001 * 110.60069 * 80.82478 * 7 6 5 38 38 H 1.08997 * 110.03010 * 359.94873 * 8 4 3 39 39 H 1.08995 * 110.03123 * 121.38535 * 8 4 3 40 40 H 1.08997 * 109.47047 * 215.00197 * 13 12 9 41 41 H 1.08998 * 109.46669 * 335.00129 * 13 12 9 42 42 H 0.96991 * 120.00257 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.46580 * 214.99992 * 22 12 9 44 44 H 1.08999 * 109.46669 * 334.99732 * 22 12 9 45 45 H 1.08999 * 109.47443 * 185.00263 * 23 22 12 46 46 H 1.09003 * 109.47230 * 304.99798 * 23 22 12 47 47 H 1.08996 * 109.47328 * 299.99995 * 25 24 23 48 48 H 1.09001 * 109.46919 * 60.00707 * 25 24 23 49 49 H 1.09005 * 109.46812 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1966 2.0951 1.2669 5 6 0.8427 2.2259 1.9947 6 6 0.8269 1.0326 2.9833 7 6 2.2987 0.9639 3.4609 8 6 3.1220 1.2928 2.1984 9 16 2.3688 2.1356 -1.4319 10 8 1.6130 1.4678 -2.4328 11 8 2.2696 3.5315 -1.1848 12 7 3.9617 1.8325 -1.7686 13 6 4.9995 2.7460 -1.2840 14 6 5.5505 2.2331 0.0215 15 1 5.1663 1.3181 0.4475 16 6 6.5457 2.9315 0.6716 17 7 7.0262 2.4843 1.8112 18 14 7.2107 4.5139 -0.0655 19 1 6.4180 5.6650 0.4360 20 1 8.6328 4.6836 0.3270 21 1 7.1100 4.4510 -1.5458 22 6 4.3330 0.6509 -2.5510 23 6 4.4736 1.0383 -4.0244 24 8 5.5639 1.9496 -4.1753 25 6 5.7828 2.3761 -5.5215 26 1 -0.3633 0.4098 0.9425 27 1 -0.3633 0.6113 -0.8261 28 1 -0.3633 -1.0211 -0.1162 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.6182 3.0831 1.0823 32 1 0.7905 3.1703 2.5363 33 1 0.0189 2.1457 1.2854 34 1 0.5432 0.1124 2.4725 35 1 0.1578 1.2297 3.8208 36 1 2.5366 -0.0369 3.8214 37 1 2.4839 1.7031 4.2403 38 1 3.4377 0.3719 1.7082 39 1 3.9927 1.8915 2.4658 40 1 5.8024 2.8061 -2.0187 41 1 4.5701 3.7364 -1.1332 42 1 7.7261 2.9758 2.2687 43 1 5.2819 0.2574 -2.1866 44 1 3.5601 -0.1107 -2.4477 45 1 4.6622 0.1444 -4.6188 46 1 3.5534 1.5133 -4.3646 47 1 5.9989 1.5098 -6.1466 48 1 4.8898 2.8787 -5.8932 49 1 6.6264 3.0658 -5.5515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336914727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -142.191001 kcal Electronic energy + Delta-G solvation = -30479.716744 eV Core-core repulsion = 26567.967008 eV Total energy + Delta-G solvation = -3911.749736 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.96468 -39.11460 -38.37282 -37.00380 -36.87811 -35.41175 -34.47285 -31.65088 -31.30057 -29.51627 -28.81802 -27.77575 -27.00899 -24.24288 -23.79759 -23.18749 -21.62369 -21.00193 -19.68606 -19.08664 -18.64198 -18.49007 -17.56705 -17.09685 -16.90143 -16.58681 -16.10848 -15.99284 -15.73446 -15.35612 -15.22346 -14.63538 -14.43245 -14.38577 -14.01276 -13.83551 -13.79202 -13.67342 -13.45417 -13.35293 -13.14386 -13.01128 -12.74194 -12.72993 -12.51444 -12.35932 -12.21632 -12.09374 -11.99360 -11.93243 -11.88969 -11.82529 -11.54474 -11.45138 -11.39969 -11.21241 -10.67507 -10.55511 -9.95874 -9.63626 -8.18619 -6.17569 -0.31033 1.35569 1.39615 1.48816 1.95912 2.40422 2.53467 2.93749 3.16918 3.36042 3.67595 3.83987 3.90641 4.04858 4.12524 4.17039 4.37017 4.42224 4.45815 4.47460 4.52966 4.57079 4.60200 4.67658 4.69526 4.75580 4.78093 4.80865 4.84342 4.89761 4.98925 4.99902 5.13005 5.16528 5.20037 5.21302 5.35156 5.40156 5.46309 5.56703 5.58261 5.63547 5.65761 5.75308 5.98397 6.34442 6.43043 6.86859 7.44609 8.94884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.006799 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.606492 B = 4117.182807 C = 5994.635105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.113 3.887 3 N -0.988 5.988 4 C 0.153 3.847 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.118 4.118 9 S 2.787 3.213 10 O -0.996 6.996 11 O -1.017 7.017 12 N -0.987 5.987 13 C 0.228 3.772 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.033 3.967 17 N -0.928 5.928 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.254 1.254 22 C 0.127 3.873 23 C 0.043 3.957 24 O -0.410 6.410 25 C 0.023 3.977 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.017 0.983 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.060 0.940 48 H 0.041 0.959 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -7.270 -4.691 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 N -0.828 5.828 4 C 0.047 3.953 5 C -0.174 4.174 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.157 4.157 9 S 2.798 3.202 10 O -0.980 6.980 11 O -1.002 7.002 12 N -0.825 5.825 13 C 0.103 3.897 14 C -0.557 4.557 15 H 0.090 0.910 16 C -0.167 4.167 17 N -0.568 5.568 18 Si 0.730 3.270 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.178 1.178 22 C 0.001 3.999 23 C -0.036 4.036 24 O -0.329 6.329 25 C -0.073 4.073 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.060 0.940 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.456 -6.655 -4.976 14.152 hybrid contribution 1.168 0.959 -0.202 1.524 sum -10.288 -5.697 -5.178 12.850 Atomic orbital electron populations 1.22468 0.94953 1.03383 1.02704 1.21412 0.95330 0.80670 1.03706 1.57847 1.79539 1.24375 1.20995 1.21378 0.96419 0.94305 0.83241 1.22866 0.95896 0.99927 0.98667 1.22610 0.95916 0.98157 0.98494 1.22337 0.95304 1.01590 0.96371 1.22329 0.97556 0.99863 0.95938 1.01558 0.72838 0.72637 0.73207 1.93514 1.70034 1.76491 1.57954 1.93500 1.86887 1.33589 1.86208 1.57448 1.24211 1.35197 1.65688 1.19273 0.87690 0.88041 0.94720 1.21668 1.19296 1.10093 1.04680 0.91028 1.25347 0.96784 0.99518 0.95023 1.69971 1.29152 1.40702 1.17020 0.86357 0.77979 0.81992 0.80641 1.20385 1.20812 1.17764 1.21392 1.03179 0.86540 0.88803 1.23169 0.89127 0.93671 0.97589 1.87997 1.51810 1.64662 1.28478 1.22909 1.01365 1.00030 0.82982 0.90362 0.93955 0.89465 0.90483 0.88823 0.91906 0.90838 0.90288 0.89693 0.89879 0.90851 0.92146 0.91657 0.93646 0.93472 0.96486 0.92876 0.89724 0.87448 0.89428 0.93855 0.92100 0.93999 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 9.08 71.98 0.65 -3.09 16 2 C 0.11 2.87 4.99 86.38 0.43 3.30 16 3 N -0.99 -32.80 2.74 -489.63 -1.34 -34.14 16 4 C 0.15 5.31 3.31 45.72 0.15 5.46 16 5 C -0.13 -3.59 5.77 31.69 0.18 -3.41 16 6 C -0.11 -2.44 6.07 31.91 0.19 -2.24 16 7 C -0.12 -3.11 6.83 31.67 0.22 -2.89 16 8 C -0.12 -4.12 5.13 31.32 0.16 -3.96 16 9 S 2.79 109.92 6.01 -56.49 -0.34 109.59 16 10 O -1.00 -37.89 15.98 -128.00 -2.05 -39.93 16 11 O -1.02 -47.76 15.31 -128.00 -1.96 -49.72 16 12 N -0.99 -39.92 2.81 -519.84 -1.46 -41.38 16 13 C 0.23 10.94 4.34 85.63 0.37 11.31 16 14 C -0.52 -27.28 9.93 25.60 0.25 -27.03 16 15 H 0.07 3.92 7.03 -2.91 -0.02 3.89 16 16 C 0.03 1.80 5.47 84.65 0.46 2.26 16 17 N -0.93 -54.03 13.96 21.45 0.30 -53.73 16 18 Si 0.90 44.05 27.47 68.60 1.88 45.94 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.25 -11.96 6.54 99.48 0.65 -11.31 16 22 C 0.13 4.17 5.79 86.38 0.50 4.67 16 23 C 0.04 1.28 6.28 71.98 0.45 1.73 16 24 O -0.41 -14.08 9.02 -148.98 -1.34 -15.42 16 25 C 0.02 0.58 11.01 113.37 1.25 1.83 16 26 H 0.08 1.50 4.12 -2.39 -0.01 1.49 16 27 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16 28 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 30 H 0.09 2.13 5.82 -2.39 -0.01 2.12 16 31 H 0.06 2.66 7.01 -2.39 -0.02 2.64 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.99 6.08 -2.39 -0.01 1.97 16 34 H 0.08 1.57 5.28 -2.38 -0.01 1.56 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 2.32 6.51 -2.39 -0.02 2.30 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 2.32 5.66 -2.39 -0.01 2.31 16 41 H 0.02 0.89 6.34 -2.39 -0.02 0.87 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 44 H 0.11 2.87 7.29 -2.39 -0.02 2.86 16 45 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -68.54 380.55 -0.15 -68.70 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.87 Total: 22.14 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.28 Total: -12.05 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -2.50 Total: -129.24 kcal Atomic # 8 Polarization: -99.72 SS G_CDS: -5.35 Total: -105.07 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.94 kcal Atomic # 16 Polarization: 109.92 SS G_CDS: -0.34 Total: 109.59 kcal Total: -68.54 -0.15 -68.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336914727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.493 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds