Wall clock time and date at job start Tue Mar 31 2020 18:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47506 * 2 1 4 4 C 1.46496 * 119.99781 * 84.99522 * 3 2 1 5 5 C 1.53003 * 109.47041 * 82.33068 * 4 3 2 6 6 C 1.53004 * 109.47451 * 184.64157 * 5 4 3 7 7 C 1.52994 * 117.49837 * 244.70632 * 6 5 4 8 8 C 1.52991 * 117.50064 * 176.04358 * 6 5 4 9 9 S 1.65595 * 120.00082 * 265.00065 * 3 2 1 10 10 O 1.42102 * 106.40335 * 210.19881 * 9 3 2 11 11 O 1.42101 * 106.40451 * 343.11756 * 9 3 2 12 12 N 1.65597 * 107.22052 * 96.65655 * 9 3 2 13 13 C 1.46502 * 120.00150 * 273.77332 * 12 9 3 14 14 C 1.50696 * 109.47191 * 115.00526 * 13 12 9 15 15 H 1.08000 * 120.00151 * 2.99033 * 14 13 12 16 16 C 1.37879 * 120.00177 * 182.99158 * 14 13 12 17 17 N 1.31525 * 119.99744 * 5.34797 * 16 14 13 18 18 Si 1.86796 * 120.00490 * 185.34381 * 16 14 13 19 19 H 1.48503 * 109.47081 * 94.99187 * 18 16 14 20 20 H 1.48497 * 109.47133 * 214.99492 * 18 16 14 21 21 H 1.48502 * 109.46848 * 334.99354 * 18 16 14 22 22 C 1.46503 * 120.00255 * 93.77206 * 12 9 3 23 23 C 1.52991 * 109.47267 * 95.00001 * 22 12 9 24 24 O 1.42897 * 109.47421 * 65.00095 * 23 22 12 25 25 C 1.42898 * 114.00594 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47185 * 300.00554 * 1 2 3 27 27 H 1.09001 * 109.46522 * 59.99780 * 1 2 3 28 28 H 1.08992 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 239.99446 * 2 1 3 30 30 H 1.09001 * 109.46522 * 120.00220 * 2 1 3 31 31 H 1.08997 * 109.47549 * 322.33513 * 4 3 2 32 32 H 1.09005 * 109.47563 * 202.32891 * 4 3 2 33 33 H 1.09005 * 109.46876 * 64.64337 * 5 4 3 34 34 H 1.08993 * 109.47154 * 304.64583 * 5 4 3 35 35 H 1.08999 * 115.54564 * 30.37390 * 6 5 4 36 36 H 1.08999 * 117.50514 * 359.97438 * 7 6 5 37 37 H 1.09000 * 117.49909 * 145.02281 * 7 6 5 38 38 H 1.09000 * 117.49921 * 214.98403 * 8 6 5 39 39 H 1.09003 * 117.50204 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47207 * 235.00540 * 13 12 9 41 41 H 1.09008 * 109.46921 * 355.00365 * 13 12 9 42 42 H 0.96999 * 119.99874 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47290 * 215.00187 * 22 12 9 44 44 H 1.09004 * 109.46575 * 335.00040 * 22 12 9 45 45 H 1.09006 * 109.47414 * 185.00366 * 23 22 12 46 46 H 1.09009 * 109.47219 * 305.00324 * 23 22 12 47 47 H 1.08997 * 109.46913 * 300.00372 * 25 24 23 48 48 H 1.08999 * 109.46896 * 59.99646 * 25 24 23 49 49 H 1.08997 * 109.47459 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4862 1.7326 1.9245 6 6 3.5805 2.4018 3.2972 7 6 4.6778 3.4487 3.4988 8 6 4.8001 2.0739 4.1607 9 16 2.4123 2.1201 -1.4286 10 8 3.4435 3.0505 -1.1282 11 8 2.5565 1.0838 -2.3901 12 7 1.0988 3.0131 -1.8972 13 6 0.0272 2.3868 -2.6755 14 6 -1.2425 2.3754 -1.8638 15 1 -1.2631 2.8359 -0.8870 16 6 -2.3778 1.7771 -2.3680 17 7 -2.3261 1.1254 -3.5092 18 14 -3.9892 1.8920 -1.4303 19 1 -4.7860 3.0309 -1.9530 20 1 -4.7543 0.6313 -1.6046 21 1 -3.7083 2.1052 0.0123 22 6 1.0082 4.4293 -1.5334 23 6 1.5420 5.2863 -2.6828 24 8 0.6950 5.1342 -3.8236 25 6 1.1075 5.8966 -4.9597 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.3349 1.8452 1.9278 32 1 2.1398 3.1811 1.0699 33 1 4.3120 2.0703 1.2982 34 1 3.5392 0.6505 2.0434 35 1 2.6311 2.5631 3.8077 36 1 5.3329 3.6605 2.6537 37 1 4.4505 4.2985 4.1424 38 1 4.6532 2.0198 5.2393 39 1 5.5352 1.3810 3.7511 40 1 -0.1335 2.9524 -3.5933 41 1 0.3089 1.3635 -2.9238 42 1 -3.1246 0.7042 -3.8638 43 1 -0.0325 4.6889 -1.3396 44 1 1.6013 4.6129 -0.6374 45 1 1.5577 6.3330 -2.3789 46 1 2.5529 4.9662 -2.9356 47 1 1.1145 6.9559 -4.7032 48 1 2.1092 5.5888 -5.2595 49 1 0.4133 5.7269 -5.7827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336956555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:44 Heat of formation + Delta-G solvation = -101.899040 kcal Electronic energy + Delta-G solvation = -29535.324109 eV Core-core repulsion = 25625.321564 eV Total energy + Delta-G solvation = -3910.002546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -37.99675 -37.67064 -36.70646 -36.16122 -35.30836 -35.19081 -32.54345 -31.28999 -29.40602 -28.43275 -26.70426 -25.64885 -23.77924 -22.84443 -22.43671 -22.03985 -21.35566 -20.44375 -18.23149 -17.22061 -16.95521 -16.36222 -16.12023 -15.78290 -15.59547 -15.51722 -14.78407 -14.43561 -14.40466 -14.04843 -13.72136 -13.47778 -13.24268 -13.11741 -12.60051 -12.32283 -12.07846 -11.97565 -11.81115 -11.69413 -11.66272 -11.60360 -11.51833 -11.40206 -11.24743 -11.11245 -11.01010 -10.81784 -10.76624 -10.55105 -10.49962 -10.37926 -10.14608 -10.00966 -9.86529 -9.64463 -9.21303 -8.66360 -8.39318 -7.91669 -6.03636 -4.05727 1.26846 3.28598 3.36348 3.36781 3.47574 3.72861 4.09444 4.24441 4.42127 4.62308 4.84945 4.86626 4.95637 5.05656 5.23847 5.29559 5.44055 5.46352 5.52615 5.53756 5.59657 5.62918 5.67835 5.71887 5.74721 5.82616 5.85583 5.87928 5.89297 5.99192 6.00124 6.03401 6.05686 6.29128 6.37141 6.38415 6.45016 6.62859 6.74862 7.01641 7.31647 7.55039 7.61008 7.62642 7.77375 7.95584 8.28942 8.96735 9.55910 11.04388 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005044 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.389281 B = 5549.306511 C = 6956.112246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.120 3.880 3 N -1.004 6.004 4 C 0.135 3.865 5 C -0.110 4.110 6 C -0.147 4.147 7 C -0.181 4.181 8 C -0.183 4.183 9 S 2.777 3.223 10 O -0.999 6.999 11 O -0.980 6.980 12 N -0.984 5.984 13 C 0.248 3.752 14 C -0.522 4.522 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C 0.135 3.865 23 C 0.045 3.955 24 O -0.365 6.365 25 C 0.030 3.970 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.262 0.738 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 4.497 9.893 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.006 4.006 3 N -0.841 5.841 4 C 0.009 3.991 5 C -0.150 4.150 6 C -0.166 4.166 7 C -0.218 4.218 8 C -0.221 4.221 9 S 2.787 3.213 10 O -0.983 6.983 11 O -0.964 6.964 12 N -0.825 5.825 13 C 0.126 3.874 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.199 1.199 22 C 0.008 3.992 23 C -0.034 4.034 24 O -0.283 6.283 25 C -0.067 4.067 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.128 4.154 9.284 14.354 hybrid contribution -1.178 0.290 0.722 1.412 sum 8.950 4.444 10.006 14.141 Atomic orbital electron populations 1.22537 0.94752 1.01968 1.05764 1.21255 0.95580 0.81166 1.02555 1.58016 1.81607 1.22878 1.21617 1.21068 0.96742 0.95690 0.85606 1.21658 0.99087 1.00498 0.93723 1.22251 0.94051 1.02951 0.97370 1.23060 1.02702 0.92636 1.03378 1.22951 1.01147 0.99311 0.98646 1.02017 0.73563 0.72902 0.72834 1.93521 1.55451 1.63953 1.85372 1.93562 1.86155 1.57705 1.59006 1.57683 1.39954 1.17464 1.67395 1.19249 0.83273 0.93530 0.91354 1.21379 0.95088 1.36375 1.03310 0.92079 1.24905 0.98673 0.95086 0.95098 1.69961 1.29047 1.34099 1.19456 0.86654 0.84127 0.77446 0.80154 1.20813 1.21359 1.19918 1.21077 1.03409 0.80659 0.94079 1.23076 0.93873 0.98485 0.87938 1.88142 1.51233 1.67993 1.20978 1.22698 0.99793 0.94423 0.89763 0.93242 0.87248 0.92898 0.89667 0.91638 0.90683 0.90734 0.91010 0.91248 0.87684 0.88587 0.89030 0.89083 0.88963 0.93624 0.93492 0.92770 0.88747 0.90471 0.93262 0.93634 0.94857 0.94719 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 10.24 37.16 0.38 -3.02 16 2 C 0.12 1.93 6.37 -4.04 -0.03 1.90 16 3 N -1.00 -16.65 2.85 -114.38 -0.33 -16.98 16 4 C 0.14 1.84 5.34 -4.04 -0.02 1.82 16 5 C -0.11 -1.35 5.80 -26.73 -0.15 -1.50 16 6 C -0.15 -1.53 5.73 -90.63 -0.52 -2.04 16 7 C -0.18 -1.78 10.18 -26.70 -0.27 -2.05 16 8 C -0.18 -1.69 10.25 -26.70 -0.27 -1.97 16 9 S 2.78 55.09 5.98 -107.50 -0.64 54.44 16 10 O -1.00 -19.78 16.15 -57.17 -0.92 -20.71 16 11 O -0.98 -22.69 15.22 -57.17 -0.87 -23.56 16 12 N -0.98 -20.23 2.92 -115.66 -0.34 -20.57 16 13 C 0.25 6.10 4.98 -5.19 -0.03 6.08 16 14 C -0.52 -13.14 6.33 -34.44 -0.22 -13.35 16 15 H 0.06 1.49 7.50 -52.49 -0.39 1.10 16 16 C 0.07 1.72 5.45 -17.81 -0.10 1.62 16 17 N -0.89 -24.96 13.30 55.43 0.74 -24.22 16 18 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.13 2.37 5.66 -4.04 -0.02 2.35 16 23 C 0.05 0.75 6.28 37.15 0.23 0.99 16 24 O -0.37 -6.91 9.05 -35.23 -0.32 -7.23 16 25 C 0.03 0.44 11.01 101.05 1.11 1.55 16 26 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.11 2.38 4.76 -51.93 -0.25 2.14 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.48 6.87 -51.93 -0.36 1.12 16 30 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 31 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.07 1.00 7.30 -51.93 -0.38 0.62 16 33 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 34 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 35 H 0.11 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.10 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 1.23 6.68 -51.93 -0.35 0.88 16 41 H 0.05 1.28 6.79 -51.92 -0.35 0.92 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.09 1.71 7.29 -51.93 -0.38 1.33 16 44 H 0.08 1.15 7.10 -51.93 -0.37 0.78 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -30.93 401.71 -10.22 -41.15 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.67 Total: 3.81 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.10 Total: -7.63 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.07 Total: -61.77 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -2.11 Total: -51.49 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 55.09 SS G_CDS: -0.64 Total: 54.44 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.93 -10.22 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336956555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.752 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds