Wall clock time and date at job start Tue Mar 31 2020 18:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47506 * 2 1 4 4 C 1.46496 * 119.99781 * 84.99522 * 3 2 1 5 5 C 1.53003 * 109.47041 * 82.33068 * 4 3 2 6 6 C 1.53004 * 109.47451 * 184.64157 * 5 4 3 7 7 C 1.52994 * 117.49837 * 244.70632 * 6 5 4 8 8 C 1.52991 * 117.50064 * 176.04358 * 6 5 4 9 9 S 1.65595 * 120.00082 * 265.00065 * 3 2 1 10 10 O 1.42102 * 106.40335 * 210.19881 * 9 3 2 11 11 O 1.42101 * 106.40451 * 343.11756 * 9 3 2 12 12 N 1.65597 * 107.22052 * 96.65655 * 9 3 2 13 13 C 1.46502 * 120.00150 * 273.77332 * 12 9 3 14 14 C 1.50696 * 109.47191 * 115.00526 * 13 12 9 15 15 H 1.08000 * 120.00151 * 2.99033 * 14 13 12 16 16 C 1.37879 * 120.00177 * 182.99158 * 14 13 12 17 17 N 1.31525 * 119.99744 * 5.34797 * 16 14 13 18 18 Si 1.86796 * 120.00490 * 185.34381 * 16 14 13 19 19 H 1.48503 * 109.47081 * 94.99187 * 18 16 14 20 20 H 1.48497 * 109.47133 * 214.99492 * 18 16 14 21 21 H 1.48502 * 109.46848 * 334.99354 * 18 16 14 22 22 C 1.46503 * 120.00255 * 93.77206 * 12 9 3 23 23 C 1.52991 * 109.47267 * 95.00001 * 22 12 9 24 24 O 1.42897 * 109.47421 * 65.00095 * 23 22 12 25 25 C 1.42898 * 114.00594 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47185 * 300.00554 * 1 2 3 27 27 H 1.09001 * 109.46522 * 59.99780 * 1 2 3 28 28 H 1.08992 * 109.47241 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47185 * 239.99446 * 2 1 3 30 30 H 1.09001 * 109.46522 * 120.00220 * 2 1 3 31 31 H 1.08997 * 109.47549 * 322.33513 * 4 3 2 32 32 H 1.09005 * 109.47563 * 202.32891 * 4 3 2 33 33 H 1.09005 * 109.46876 * 64.64337 * 5 4 3 34 34 H 1.08993 * 109.47154 * 304.64583 * 5 4 3 35 35 H 1.08999 * 115.54564 * 30.37390 * 6 5 4 36 36 H 1.08999 * 117.50514 * 359.97438 * 7 6 5 37 37 H 1.09000 * 117.49909 * 145.02281 * 7 6 5 38 38 H 1.09000 * 117.49921 * 214.98403 * 8 6 5 39 39 H 1.09003 * 117.50204 * 359.97438 * 8 6 5 40 40 H 1.09002 * 109.47207 * 235.00540 * 13 12 9 41 41 H 1.09008 * 109.46921 * 355.00365 * 13 12 9 42 42 H 0.96999 * 119.99874 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.47290 * 215.00187 * 22 12 9 44 44 H 1.09004 * 109.46575 * 335.00040 * 22 12 9 45 45 H 1.09006 * 109.47414 * 185.00366 * 23 22 12 46 46 H 1.09009 * 109.47219 * 305.00324 * 23 22 12 47 47 H 1.08997 * 109.46913 * 300.00372 * 25 24 23 48 48 H 1.08999 * 109.46896 * 59.99646 * 25 24 23 49 49 H 1.08997 * 109.47459 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 3.4862 1.7326 1.9245 6 6 3.5805 2.4018 3.2972 7 6 4.6778 3.4487 3.4988 8 6 4.8001 2.0739 4.1607 9 16 2.4123 2.1201 -1.4286 10 8 3.4435 3.0505 -1.1282 11 8 2.5565 1.0838 -2.3901 12 7 1.0988 3.0131 -1.8972 13 6 0.0272 2.3868 -2.6755 14 6 -1.2425 2.3754 -1.8638 15 1 -1.2631 2.8359 -0.8870 16 6 -2.3778 1.7771 -2.3680 17 7 -2.3261 1.1254 -3.5092 18 14 -3.9892 1.8920 -1.4303 19 1 -4.7860 3.0309 -1.9530 20 1 -4.7543 0.6313 -1.6046 21 1 -3.7083 2.1052 0.0123 22 6 1.0082 4.4293 -1.5334 23 6 1.5420 5.2863 -2.6828 24 8 0.6950 5.1342 -3.8236 25 6 1.1075 5.8966 -4.9597 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.3349 1.8452 1.9278 32 1 2.1398 3.1811 1.0699 33 1 4.3120 2.0703 1.2982 34 1 3.5392 0.6505 2.0434 35 1 2.6311 2.5631 3.8077 36 1 5.3329 3.6605 2.6537 37 1 4.4505 4.2985 4.1424 38 1 4.6532 2.0198 5.2393 39 1 5.5352 1.3810 3.7511 40 1 -0.1335 2.9524 -3.5933 41 1 0.3089 1.3635 -2.9238 42 1 -3.1246 0.7042 -3.8638 43 1 -0.0325 4.6889 -1.3396 44 1 1.6013 4.6129 -0.6374 45 1 1.5577 6.3330 -2.3789 46 1 2.5529 4.9662 -2.9356 47 1 1.1145 6.9559 -4.7032 48 1 2.1092 5.5888 -5.2595 49 1 0.4133 5.7269 -5.7827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336956555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:43 Heat of formation + Delta-G solvation = -121.801030 kcal Electronic energy + Delta-G solvation = -29536.187124 eV Core-core repulsion = 25625.321564 eV Total energy + Delta-G solvation = -3910.865561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.06312 -38.91965 -38.35288 -37.31468 -36.92101 -36.86337 -34.47082 -32.46892 -30.95961 -29.67118 -28.43053 -27.01300 -24.96926 -24.52964 -23.44045 -23.14854 -22.85864 -21.28404 -19.72798 -18.72035 -18.49516 -18.32052 -17.58772 -17.06199 -16.89751 -16.50138 -16.37025 -15.93828 -15.76841 -15.23953 -15.00091 -14.71842 -14.56281 -14.38450 -14.37435 -13.91571 -13.51528 -13.40304 -13.27067 -13.20602 -13.15902 -12.96590 -12.81903 -12.67275 -12.64289 -12.53584 -12.32099 -12.23689 -12.10825 -12.03113 -11.96125 -11.81817 -11.53502 -11.51713 -11.15848 -10.71728 -10.54673 -10.43180 -9.95683 -9.61107 -8.05599 -6.13080 -0.29800 1.46479 1.48507 1.57204 1.98786 2.49383 2.55644 2.97784 3.00634 3.27165 3.38271 3.71874 3.89093 4.06397 4.07487 4.12186 4.21868 4.27882 4.39595 4.42922 4.48609 4.50844 4.55318 4.58770 4.65172 4.65916 4.77617 4.78848 4.84790 4.85979 4.91559 5.00407 5.11856 5.13207 5.14315 5.21413 5.33428 5.40595 5.49096 5.51467 5.60986 5.74735 5.82892 5.90417 6.03440 6.27748 6.41673 6.95330 7.51967 9.03376 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010185 B = 0.005044 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.389281 B = 5549.306511 C = 6956.112246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.128 3.872 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.187 4.187 8 C -0.176 4.176 9 S 2.786 3.214 10 O -0.999 6.999 11 O -1.020 7.020 12 N -0.989 5.989 13 C 0.270 3.730 14 C -0.509 4.509 15 H 0.070 0.930 16 C 0.015 3.985 17 N -0.929 5.929 18 Si 0.951 3.049 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.258 1.258 22 C 0.126 3.874 23 C 0.042 3.958 24 O -0.405 6.405 25 C 0.024 3.976 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.261 0.739 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.038 0.962 47 H 0.060 0.940 48 H 0.039 0.961 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 5.504 12.978 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.005 4.005 3 N -0.838 5.838 4 C 0.003 3.997 5 C -0.145 4.145 6 C -0.172 4.172 7 C -0.224 4.224 8 C -0.213 4.213 9 S 2.796 3.204 10 O -0.983 6.983 11 O -1.004 7.004 12 N -0.829 5.829 13 C 0.147 3.853 14 C -0.548 4.548 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.570 5.570 18 Si 0.777 3.223 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.182 1.182 22 C 0.000 4.000 23 C -0.036 4.036 24 O -0.324 6.324 25 C -0.072 4.072 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.185 5.200 12.386 16.858 hybrid contribution -1.096 0.003 -0.218 1.118 sum 9.089 5.204 12.168 16.054 Atomic orbital electron populations 1.22444 0.95793 1.02288 1.04184 1.21319 0.94619 0.80943 1.03576 1.57797 1.81363 1.23071 1.21570 1.21377 0.98385 0.95581 0.84384 1.21578 0.97385 1.01097 0.94434 1.22233 0.95064 1.03361 0.96560 1.23116 1.02379 0.93446 1.03455 1.23029 1.00201 0.98659 0.99387 1.01574 0.73384 0.72357 0.73077 1.93511 1.55351 1.63998 1.85470 1.93507 1.86712 1.59059 1.61159 1.57577 1.38824 1.18987 1.67536 1.18672 0.84408 0.91411 0.90845 1.21536 0.94970 1.35080 1.03243 0.91146 1.25658 1.01953 0.94925 0.95846 1.70105 1.29789 1.35662 1.21424 0.85659 0.80039 0.76972 0.79652 1.20905 1.21666 1.18219 1.21368 1.03820 0.79045 0.95722 1.23168 0.92944 1.00323 0.87203 1.88086 1.52381 1.69433 1.22524 1.22876 1.00033 0.95581 0.88698 0.91877 0.91415 0.91801 0.91579 0.87590 0.88601 0.90500 0.92906 0.90594 0.86369 0.89700 0.87743 0.87498 0.89103 0.96716 0.96879 0.92994 0.89319 0.87530 0.89628 0.94410 0.92105 0.94207 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.47 10.24 71.98 0.74 -5.73 16 2 C 0.12 3.73 6.37 86.38 0.55 4.28 16 3 N -1.00 -31.96 2.85 -515.79 -1.47 -33.42 16 4 C 0.13 3.16 5.34 86.38 0.46 3.62 16 5 C -0.11 -2.34 5.80 30.60 0.18 -2.16 16 6 C -0.15 -2.72 5.73 -10.80 -0.06 -2.79 16 7 C -0.19 -3.23 10.18 30.62 0.31 -2.92 16 8 C -0.18 -2.75 10.25 30.61 0.31 -2.44 16 9 S 2.79 111.29 5.98 -56.49 -0.34 110.95 16 10 O -1.00 -39.04 16.15 -128.00 -2.07 -41.11 16 11 O -1.02 -49.07 15.22 -128.00 -1.95 -51.02 16 12 N -0.99 -41.15 2.92 -519.85 -1.52 -42.67 16 13 C 0.27 13.82 4.98 85.63 0.43 14.25 16 14 C -0.51 -25.87 6.33 25.60 0.16 -25.71 16 15 H 0.07 3.38 7.50 -2.91 -0.02 3.36 16 16 C 0.02 0.80 5.45 84.65 0.46 1.26 16 17 N -0.93 -53.96 13.30 21.45 0.29 -53.68 16 18 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 C 0.13 4.34 5.66 86.38 0.49 4.82 16 23 C 0.04 1.36 6.28 71.98 0.45 1.81 16 24 O -0.40 -15.43 9.05 -148.98 -1.35 -16.78 16 25 C 0.02 0.70 11.01 113.37 1.25 1.94 16 26 H 0.06 1.94 8.12 -2.39 -0.02 1.93 16 27 H 0.07 2.96 4.76 -2.39 -0.01 2.95 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.32 6.87 -2.39 -0.02 2.30 16 30 H 0.11 2.45 7.82 -2.39 -0.02 2.43 16 31 H 0.10 2.02 8.11 -2.39 -0.02 2.00 16 32 H 0.08 1.87 7.30 -2.38 -0.02 1.85 16 33 H 0.05 1.37 7.88 -2.38 -0.02 1.35 16 34 H 0.08 1.56 7.85 -2.39 -0.02 1.54 16 35 H 0.12 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.08 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.01 0.84 6.68 -2.39 -0.02 0.83 16 41 H 0.01 0.76 6.79 -2.38 -0.02 0.75 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.09 3.14 7.29 -2.39 -0.02 3.12 16 44 H 0.11 2.96 7.10 -2.38 -0.02 2.94 16 45 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 46 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.87 401.71 0.26 -68.61 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.91 Total: 24.96 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 5.73 Total: -9.75 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -2.70 Total: -129.77 kcal Atomic # 8 Polarization: -103.54 SS G_CDS: -5.36 Total: -108.91 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 111.29 SS G_CDS: -0.34 Total: 110.95 kcal Total: -68.87 0.26 -68.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336956555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.188 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds