Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46595 * 2 1 4 4 N 1.46501 * 109.47062 * 119.99457 * 2 1 3 5 5 C 1.34770 * 120.00122 * 275.00087 * 4 2 1 6 6 O 1.21282 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00010 * 180.02562 * 5 4 2 8 8 O 1.42902 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.35898 * 116.99694 * 180.02562 * 8 7 5 10 10 C 1.38735 * 120.05254 * 179.97438 * 9 8 7 11 11 C 1.38144 * 119.94607 * 179.97438 * 10 9 8 12 12 C 1.38265 * 120.05233 * 359.97438 * 11 10 9 13 13 C 1.38269 * 120.11630 * 0.04162 * 12 11 10 14 14 C 1.38142 * 120.04900 * 359.95598 * 13 12 11 15 15 C 1.50697 * 109.47209 * 239.99908 * 2 1 3 16 16 O 1.21278 * 120.00071 * 240.00148 * 15 2 1 17 17 N 1.34780 * 119.99781 * 59.99423 * 15 2 1 18 18 C 1.46500 * 119.99855 * 179.97438 * 17 15 2 19 19 C 1.52997 * 109.47092 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46821 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.46689 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00298 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47197 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47052 * 120.00134 * 25 23 21 28 28 H 1.48498 * 109.47121 * 240.00338 * 25 23 21 29 29 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47151 * 299.99808 * 1 2 3 31 31 H 1.08995 * 109.47685 * 60.00048 * 1 2 3 32 32 H 0.96998 * 119.99602 * 95.00196 * 4 2 1 33 33 H 1.08999 * 109.46805 * 59.99992 * 7 5 4 34 34 H 1.08998 * 109.47364 * 300.00344 * 7 5 4 35 35 H 1.08002 * 120.02704 * 359.70561 * 10 9 8 36 36 H 1.08001 * 119.97447 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.94053 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.97612 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.02748 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00168 * 0.02562 * 17 15 2 41 41 H 1.09000 * 109.47153 * 300.00831 * 18 17 15 42 42 H 1.09002 * 109.46809 * 60.00134 * 18 17 15 43 43 H 1.08997 * 109.46985 * 299.99991 * 19 18 17 44 44 H 1.08996 * 109.47152 * 60.00262 * 19 18 17 45 45 H 1.08997 * 109.47094 * 299.99630 * 20 19 18 46 46 H 1.08996 * 109.47284 * 60.00048 * 20 19 18 47 47 H 0.97000 * 119.99847 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8582 1.1586 2.4117 7 6 2.6499 -0.7283 3.5875 8 8 2.6973 0.1898 4.6816 9 6 3.1327 -0.2941 5.8745 10 6 3.2045 0.5423 6.9791 11 6 3.6468 0.0480 8.1908 12 6 4.0173 -1.2793 8.3035 13 6 3.9470 -2.1149 7.2041 14 6 3.5053 -1.6254 5.9902 15 6 2.0324 -0.7104 -1.2304 16 8 2.7296 -1.6965 -1.1191 17 7 1.7066 -0.2500 -2.4545 18 6 2.1955 -0.9403 -3.6507 19 6 1.6858 -0.2188 -4.8999 20 6 2.1958 -0.9402 -6.1492 21 6 1.6932 -0.2299 -7.3796 22 1 1.0726 0.6483 -7.2805 23 6 2.0267 -0.7007 -8.6319 24 7 2.7829 -1.7699 -8.7526 25 14 1.4032 0.1792 -10.1571 26 1 0.5776 1.3456 -9.7530 27 1 2.5578 0.6469 -10.9655 28 1 0.5789 -0.7549 -10.9653 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2490 -1.6316 1.1527 33 1 3.6492 -1.1201 3.3979 34 1 1.9778 -1.5506 3.8326 35 1 2.9189 1.5802 6.8906 36 1 3.7033 0.6989 9.0508 37 1 4.3633 -1.6637 9.2516 38 1 4.2374 -3.1511 7.2945 39 1 3.4501 -2.2785 5.1318 40 1 1.1492 0.5388 -2.5436 41 1 3.2855 -0.9399 -3.6505 42 1 1.8326 -1.9681 -3.6508 43 1 0.5958 -0.2190 -4.9003 44 1 2.0490 0.8088 -4.8996 45 1 3.2858 -0.9404 -6.1490 46 1 1.8322 -1.9677 -6.1493 47 1 3.0172 -2.1014 -9.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337832288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -98.416480 kcal Electronic energy + Delta-G solvation = -26709.864252 eV Core-core repulsion = 22664.568770 eV Total energy + Delta-G solvation = -4045.295482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92755 -40.27829 -39.22152 -37.63052 -35.74481 -35.14008 -33.47889 -32.06169 -31.49939 -30.94325 -30.33332 -28.30402 -26.90448 -24.76214 -23.30896 -22.92592 -22.43685 -20.92566 -20.76710 -20.09670 -18.86061 -18.19920 -16.99385 -16.78689 -16.57472 -16.35296 -16.19439 -15.90748 -15.63253 -15.02634 -14.84965 -14.74030 -14.48269 -14.22798 -14.10392 -13.84322 -13.63407 -13.18053 -13.08544 -12.77063 -12.64811 -12.34684 -12.03707 -11.99324 -11.89821 -11.75950 -11.55859 -11.34951 -10.96076 -10.81141 -10.61911 -10.26648 -10.08764 -9.94576 -9.62069 -9.45349 -9.40519 -9.15485 -8.96542 -8.66327 -8.41803 -6.06317 -4.09529 0.89011 1.00121 2.01732 2.14642 2.49772 3.04225 3.27205 3.34778 3.35159 3.36154 3.38896 4.12430 4.35824 4.40606 4.45278 4.50352 4.52773 4.54990 4.70822 4.74019 4.84735 4.94006 5.01993 5.18783 5.25642 5.29841 5.44167 5.56012 5.60186 5.67290 5.80971 5.83877 5.93525 5.95793 6.05909 6.09795 6.28835 6.30352 6.50649 6.70907 6.87787 6.91907 7.07197 7.46186 7.58110 7.69538 7.76626 7.92007 8.10641 8.33064 8.97302 9.55163 11.04953 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.001406 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.866461 B =19911.558959 C =20317.861410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.116 0.884 4 N -0.708 5.708 5 C 0.520 3.480 6 O -0.516 6.516 7 C 0.043 3.957 8 O -0.289 6.289 9 C 0.129 3.871 10 C -0.149 4.149 11 C -0.080 4.080 12 C -0.160 4.160 13 C -0.080 4.080 14 C -0.211 4.211 15 C 0.506 3.494 16 O -0.542 6.542 17 N -0.717 5.717 18 C 0.116 3.884 19 C -0.122 4.122 20 C 0.023 3.977 21 C -0.523 4.523 22 H 0.056 0.944 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 0.562 33.044 33.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.134 0.866 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.391 6.391 7 C -0.036 4.036 8 O -0.202 6.202 9 C 0.084 3.916 10 C -0.167 4.167 11 C -0.098 4.098 12 C -0.178 4.178 13 C -0.098 4.098 14 C -0.230 4.230 15 C 0.291 3.709 16 O -0.419 6.419 17 N -0.367 5.367 18 C -0.006 4.006 19 C -0.160 4.160 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.532 5.532 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.806 0.791 32.950 32.969 hybrid contribution -0.337 0.013 -1.143 1.191 sum -1.143 0.804 31.807 31.838 Atomic orbital electron populations 1.22148 0.92494 1.03387 1.03866 1.20814 0.95876 0.98192 0.83333 0.86593 1.45535 1.67663 1.15007 1.08155 1.19951 0.78286 0.87372 0.83894 1.90766 1.48365 1.15401 1.84537 1.22427 1.03277 0.92452 0.85460 1.86150 1.80957 1.37121 1.15945 1.19076 0.94703 0.92468 0.85380 1.20495 1.04988 1.00331 0.90926 1.21004 0.96629 0.95610 0.96600 1.21107 1.03501 0.94123 0.99053 1.20977 0.96917 0.99789 0.92096 1.21304 1.07128 0.94739 0.99828 1.20449 0.80657 0.84895 0.84932 1.90698 1.38161 1.26441 1.86637 1.46154 1.52837 1.31947 1.05794 1.21719 0.99410 0.96589 0.82926 1.21905 1.00305 0.99598 0.94166 1.19035 0.96696 0.95693 0.89994 1.21234 1.31646 1.12358 0.90888 0.92553 1.25028 0.95118 0.95044 0.99228 1.69975 1.36775 1.22984 1.23515 0.86527 0.78661 0.79675 0.83077 1.19725 1.20986 1.20984 0.91543 0.90755 0.90495 0.75097 0.88537 0.88653 0.84946 0.85232 0.85842 0.85645 0.85321 0.76422 0.91554 0.91507 0.92588 0.92588 0.96254 0.96252 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.38 37.16 0.35 -0.99 16 2 C 0.13 1.27 2.98 -69.08 -0.21 1.06 16 3 H 0.12 1.20 7.58 -51.92 -0.39 0.80 16 4 N -0.71 -6.64 4.95 -54.93 -0.27 -6.91 16 5 C 0.52 5.40 7.87 -10.99 -0.09 5.32 16 6 O -0.52 -7.36 16.16 -14.35 -0.23 -7.59 16 7 C 0.04 0.33 5.22 36.01 0.19 0.51 16 8 O -0.29 -3.04 9.67 -39.33 -0.38 -3.42 16 9 C 0.13 1.17 6.69 -39.22 -0.26 0.91 16 10 C -0.15 -1.24 9.99 -39.43 -0.39 -1.63 16 11 C -0.08 -0.53 10.04 -39.61 -0.40 -0.93 16 12 C -0.16 -0.98 10.04 -39.56 -0.40 -1.38 16 13 C -0.08 -0.51 10.04 -39.60 -0.40 -0.91 16 14 C -0.21 -1.53 9.04 -39.44 -0.36 -1.89 16 15 C 0.51 6.48 7.22 -10.99 -0.08 6.41 16 16 O -0.54 -8.67 15.84 5.56 0.09 -8.58 16 17 N -0.72 -9.08 5.45 -60.30 -0.33 -9.41 16 18 C 0.12 1.88 5.67 -4.04 -0.02 1.86 16 19 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 20 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 21 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 25 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.54 7.56 -51.93 -0.39 0.15 16 32 H 0.41 3.38 7.79 -40.82 -0.32 3.06 16 33 H 0.10 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.10 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.67 6.30 -52.48 -0.33 0.34 16 40 H 0.40 4.03 7.89 -40.82 -0.32 3.70 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -34.95 401.08 -9.29 -44.23 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.17 Total: 1.83 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.75 Total: -6.70 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.14 Total: -41.97 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.52 Total: -19.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.95 -9.29 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337832288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.183 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds