Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46595 * 2 1 4 4 N 1.46501 * 109.47062 * 119.99457 * 2 1 3 5 5 C 1.34770 * 120.00122 * 275.00087 * 4 2 1 6 6 O 1.21282 * 120.00256 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00010 * 180.02562 * 5 4 2 8 8 O 1.42902 * 109.47357 * 180.02562 * 7 5 4 9 9 C 1.35898 * 116.99694 * 180.02562 * 8 7 5 10 10 C 1.38735 * 120.05254 * 179.97438 * 9 8 7 11 11 C 1.38144 * 119.94607 * 179.97438 * 10 9 8 12 12 C 1.38265 * 120.05233 * 359.97438 * 11 10 9 13 13 C 1.38269 * 120.11630 * 0.04162 * 12 11 10 14 14 C 1.38142 * 120.04900 * 359.95598 * 13 12 11 15 15 C 1.50697 * 109.47209 * 239.99908 * 2 1 3 16 16 O 1.21278 * 120.00071 * 240.00148 * 15 2 1 17 17 N 1.34780 * 119.99781 * 59.99423 * 15 2 1 18 18 C 1.46500 * 119.99855 * 179.97438 * 17 15 2 19 19 C 1.52997 * 109.47092 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.46821 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.46689 * 179.97438 * 20 19 18 22 22 H 1.07995 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00001 * 179.97438 * 21 20 19 24 24 N 1.31523 * 119.99878 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00298 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47197 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47052 * 120.00134 * 25 23 21 28 28 H 1.48498 * 109.47121 * 240.00338 * 25 23 21 29 29 H 1.09008 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47151 * 299.99808 * 1 2 3 31 31 H 1.08995 * 109.47685 * 60.00048 * 1 2 3 32 32 H 0.96998 * 119.99602 * 95.00196 * 4 2 1 33 33 H 1.08999 * 109.46805 * 59.99992 * 7 5 4 34 34 H 1.08998 * 109.47364 * 300.00344 * 7 5 4 35 35 H 1.08002 * 120.02704 * 359.70561 * 10 9 8 36 36 H 1.08001 * 119.97447 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.94053 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.97612 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.02748 * 180.02562 * 14 13 12 40 40 H 0.96998 * 120.00168 * 0.02562 * 17 15 2 41 41 H 1.09000 * 109.47153 * 300.00831 * 18 17 15 42 42 H 1.09002 * 109.46809 * 60.00134 * 18 17 15 43 43 H 1.08997 * 109.46985 * 299.99991 * 19 18 17 44 44 H 1.08996 * 109.47152 * 60.00262 * 19 18 17 45 45 H 1.08997 * 109.47094 * 299.99630 * 20 19 18 46 46 H 1.08996 * 109.47284 * 60.00048 * 20 19 18 47 47 H 0.97000 * 119.99847 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8582 1.1586 2.4117 7 6 2.6499 -0.7283 3.5875 8 8 2.6973 0.1898 4.6816 9 6 3.1327 -0.2941 5.8745 10 6 3.2045 0.5423 6.9791 11 6 3.6468 0.0480 8.1908 12 6 4.0173 -1.2793 8.3035 13 6 3.9470 -2.1149 7.2041 14 6 3.5053 -1.6254 5.9902 15 6 2.0324 -0.7104 -1.2304 16 8 2.7296 -1.6965 -1.1191 17 7 1.7066 -0.2500 -2.4545 18 6 2.1955 -0.9403 -3.6507 19 6 1.6858 -0.2188 -4.8999 20 6 2.1958 -0.9402 -6.1492 21 6 1.6932 -0.2299 -7.3796 22 1 1.0726 0.6483 -7.2805 23 6 2.0267 -0.7007 -8.6319 24 7 2.7829 -1.7699 -8.7526 25 14 1.4032 0.1792 -10.1571 26 1 0.5776 1.3456 -9.7530 27 1 2.5578 0.6469 -10.9655 28 1 0.5789 -0.7549 -10.9653 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2490 -1.6316 1.1527 33 1 3.6492 -1.1201 3.3979 34 1 1.9778 -1.5506 3.8326 35 1 2.9189 1.5802 6.8906 36 1 3.7033 0.6989 9.0508 37 1 4.3633 -1.6637 9.2516 38 1 4.2374 -3.1511 7.2945 39 1 3.4501 -2.2785 5.1318 40 1 1.1492 0.5388 -2.5436 41 1 3.2855 -0.9399 -3.6505 42 1 1.8326 -1.9681 -3.6508 43 1 0.5958 -0.2190 -4.9003 44 1 2.0490 0.8088 -4.8996 45 1 3.2858 -0.9404 -6.1490 46 1 1.8322 -1.9677 -6.1493 47 1 3.0172 -2.1014 -9.6336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337832288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -121.518521 kcal Electronic energy + Delta-G solvation = -26710.866032 eV Core-core repulsion = 22664.568770 eV Total energy + Delta-G solvation = -4046.297262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70978 -41.07612 -40.12136 -38.22449 -37.09087 -36.10830 -35.25640 -33.35435 -32.32086 -31.84773 -30.95257 -29.00388 -28.51777 -25.90289 -24.58471 -23.64402 -23.08828 -22.33106 -21.67014 -21.25488 -19.44500 -19.10781 -18.51580 -17.74337 -17.46748 -17.24265 -17.02081 -16.83706 -16.61659 -16.46183 -15.98844 -15.73859 -15.38992 -15.27521 -14.94131 -14.68531 -14.32748 -14.26908 -13.97225 -13.74953 -13.70384 -13.56467 -13.38433 -13.33980 -12.78866 -12.69760 -12.54854 -12.47929 -12.35181 -12.11685 -11.84770 -11.67643 -11.59755 -11.22998 -11.12428 -10.94260 -10.55631 -10.38097 -10.15722 -9.95161 -9.21192 -8.19667 -6.30593 0.39458 0.47450 1.27646 1.36170 1.41635 1.42471 1.46195 1.55039 2.10581 2.42315 2.61524 2.84590 3.14666 3.41022 3.57149 3.86828 3.94253 3.99542 4.02869 4.04439 4.08714 4.15868 4.22734 4.30242 4.47413 4.53566 4.55681 4.60392 4.71281 4.75245 4.95077 4.95624 5.09239 5.15154 5.15595 5.18131 5.33357 5.36769 5.48218 5.53061 5.61342 5.71788 5.81471 5.85043 6.22602 6.24631 6.39834 6.43477 6.87345 6.98673 7.07672 7.39232 8.92458 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.039324 B = 0.001406 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.866461 B =19911.558959 C =20317.861410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.117 0.883 4 N -0.701 5.701 5 C 0.521 3.479 6 O -0.560 6.560 7 C 0.043 3.957 8 O -0.319 6.319 9 C 0.106 3.894 10 C -0.172 4.172 11 C -0.084 4.084 12 C -0.163 4.163 13 C -0.086 4.086 14 C -0.216 4.216 15 C 0.510 3.490 16 O -0.574 6.574 17 N -0.707 5.707 18 C 0.130 3.870 19 C -0.104 4.104 20 C 0.023 3.977 21 C -0.540 4.540 22 H 0.066 0.934 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.281 1.281 28 H -0.280 1.280 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.419 0.581 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.417 0.583 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.067 0.933 45 H -0.008 1.008 46 H -0.006 1.006 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 0.745 34.115 34.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.134 0.866 4 N -0.357 5.357 5 C 0.308 3.692 6 O -0.438 6.438 7 C -0.035 4.035 8 O -0.232 6.232 9 C 0.061 3.939 10 C -0.191 4.191 11 C -0.102 4.102 12 C -0.181 4.181 13 C -0.103 4.103 14 C -0.235 4.235 15 C 0.296 3.704 16 O -0.454 6.454 17 N -0.358 5.358 18 C 0.007 3.993 19 C -0.142 4.142 20 C -0.015 4.015 21 C -0.578 4.578 22 H 0.084 0.916 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.789 3.211 26 H -0.182 1.182 27 H -0.207 1.207 28 H -0.206 1.206 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.257 0.743 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.255 0.745 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.010 0.990 46 H 0.013 0.987 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.644 0.980 34.035 34.088 hybrid contribution -0.040 -0.088 -1.419 1.422 sum -1.684 0.891 32.616 32.672 Atomic orbital electron populations 1.22128 0.90763 1.03842 1.04562 1.20776 0.97054 0.97621 0.82135 0.86581 1.45525 1.67128 1.15259 1.07768 1.20429 0.77312 0.86867 0.84635 1.90744 1.50482 1.17327 1.85247 1.22572 1.04987 0.92220 0.83734 1.86093 1.81594 1.38640 1.16896 1.19315 0.95991 0.93543 0.85059 1.20701 1.06107 1.00412 0.91834 1.21292 0.95965 0.96382 0.96551 1.21472 1.02654 0.93880 1.00085 1.21347 0.96228 1.01013 0.91754 1.21563 1.06718 0.94192 1.01019 1.20861 0.79781 0.84350 0.85415 1.90689 1.39579 1.28003 1.87104 1.45900 1.52910 1.32238 1.04782 1.21279 0.98421 0.96117 0.83521 1.21613 1.00951 0.99375 0.92248 1.18953 0.95000 0.95003 0.92564 1.21723 1.31459 1.12660 0.91978 0.91583 1.25982 0.95300 0.95785 1.02861 1.70113 1.38261 1.24720 1.24380 0.85405 0.78159 0.78762 0.78754 1.18235 1.20724 1.20600 0.91180 0.91007 0.88873 0.74253 0.86449 0.85775 0.85517 0.83229 0.83571 0.83340 0.83456 0.74543 0.93042 0.92527 0.91115 0.91476 0.98955 0.98731 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.38 71.98 0.68 -1.62 16 2 C 0.13 2.50 2.98 44.24 0.13 2.64 16 3 H 0.12 2.27 7.58 -2.38 -0.02 2.26 16 4 N -0.70 -12.42 4.95 -446.09 -2.21 -14.63 16 5 C 0.52 10.53 7.87 87.66 0.69 11.22 16 6 O -0.56 -16.10 16.16 16.00 0.26 -15.84 16 7 C 0.04 0.61 5.22 71.24 0.37 0.98 16 8 O -0.32 -6.74 9.67 -73.37 -0.71 -7.45 16 9 C 0.11 1.90 6.69 22.51 0.15 2.05 16 10 C -0.17 -2.90 9.99 22.37 0.22 -2.68 16 11 C -0.08 -1.02 10.04 22.25 0.22 -0.80 16 12 C -0.16 -1.69 10.04 22.28 0.22 -1.47 16 13 C -0.09 -0.91 10.04 22.25 0.22 -0.69 16 14 C -0.22 -2.82 9.04 22.36 0.20 -2.62 16 15 C 0.51 12.50 7.22 87.66 0.63 13.13 16 16 O -0.57 -18.05 15.84 -3.02 -0.05 -18.10 16 17 N -0.71 -16.89 5.45 -463.06 -2.52 -19.41 16 18 C 0.13 4.18 5.67 86.38 0.49 4.67 16 19 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 20 C 0.02 1.13 4.97 29.85 0.15 1.28 16 21 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 22 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 24 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 25 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.08 7.56 -2.39 -0.02 1.06 16 32 H 0.42 6.35 7.79 -92.71 -0.72 5.63 16 33 H 0.12 1.15 7.66 -2.39 -0.02 1.13 16 34 H 0.12 1.01 7.66 -2.39 -0.02 0.99 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 38 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 1.20 6.30 -2.91 -0.02 1.18 16 40 H 0.42 7.40 7.89 -92.71 -0.73 6.67 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -77.09 401.08 1.86 -75.24 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.47 Total: 17.22 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.24 Total: -6.38 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -4.45 Total: -89.90 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.50 Total: -41.39 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -77.09 1.86 -75.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337832288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.282 kcal (2) G-P(sol) polarization free energy of solvation -77.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds