Wall clock time and date at job start Tue Mar 31 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.50705 * 109.47376 * 120.00200 * 2 1 3 5 5 C 1.38285 * 119.97060 * 300.23432 * 4 2 1 6 6 C 1.38240 * 120.11093 * 180.27837 * 5 4 2 7 7 C 1.38171 * 120.05518 * 359.48268 * 6 5 4 8 8 C 1.38705 * 119.93978 * 0.26041 * 7 6 5 9 9 O 1.35904 * 120.05280 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00114 * 5.45237 * 9 8 7 11 11 H 1.09006 * 109.47087 * 35.05780 * 10 9 8 12 12 C 1.53004 * 109.47130 * 275.05962 * 10 9 8 13 13 C 1.50700 * 109.47279 * 155.06084 * 10 9 8 14 14 O 1.21276 * 119.99688 * 4.99932 * 13 10 9 15 15 N 1.34772 * 119.99669 * 185.00457 * 13 10 9 16 16 C 1.46505 * 119.99558 * 180.02562 * 15 13 10 17 17 C 1.50704 * 109.46926 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00014 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99802 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99951 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99835 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00133 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99972 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99870 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47375 * 90.00033 * 24 22 20 26 26 H 1.48504 * 109.46834 * 210.00337 * 24 22 20 27 27 H 1.48509 * 109.47003 * 329.99656 * 24 22 20 28 28 C 1.38118 * 119.97277 * 119.99712 * 4 2 1 29 29 H 1.09005 * 109.46992 * 299.99622 * 1 2 3 30 30 H 1.09001 * 109.47343 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46992 * 240.00378 * 2 1 3 33 33 H 1.09002 * 109.46775 * 300.00798 * 3 2 1 34 34 H 1.09007 * 109.46994 * 59.99748 * 3 2 1 35 35 H 1.08996 * 109.47226 * 180.02562 * 3 2 1 36 36 H 1.08003 * 119.94405 * 0.03830 * 5 4 2 37 37 H 1.08007 * 119.97341 * 179.76379 * 6 5 4 38 38 H 1.08001 * 120.02510 * 180.27585 * 7 6 5 39 39 H 1.08998 * 109.46878 * 59.99860 * 12 10 9 40 40 H 1.08998 * 109.47334 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47249 * 299.99876 * 12 10 9 42 42 H 0.96999 * 120.00675 * 359.97438 * 15 13 10 43 43 H 1.08999 * 109.46954 * 299.99456 * 16 15 13 44 44 H 1.08995 * 109.47391 * 59.99317 * 16 15 13 45 45 H 0.96998 * 120.00088 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00371 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.02986 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6940 -0.2404 2.4862 6 6 2.1580 -0.8864 3.6168 7 6 2.9525 -2.0102 3.4947 8 6 3.2890 -2.4868 2.2363 9 8 4.0699 -3.5922 2.1135 10 6 4.4102 -4.2832 3.3172 11 1 3.5733 -4.2330 4.0139 12 6 5.6404 -3.6297 3.9501 13 6 4.7143 -5.7247 3.0002 14 8 4.7352 -6.1006 1.8474 15 7 4.9629 -6.5960 3.9979 16 6 5.2592 -7.9973 3.6896 17 6 5.4982 -8.7538 4.9709 18 8 5.4276 -8.1791 6.0367 19 7 5.7894 -10.0692 4.9325 20 6 6.0064 -10.7575 6.0982 21 1 5.9435 -10.2458 7.0472 22 6 6.3072 -12.1135 6.0586 23 7 6.5146 -12.7733 7.1759 24 14 6.4166 -12.9984 4.4172 25 1 7.8101 -12.9281 3.9089 26 1 6.0253 -14.4200 4.5942 27 1 5.5012 -12.3506 3.4436 28 6 2.8264 -1.8334 1.1030 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.0694 0.6353 2.5837 37 1 1.8954 -0.5151 4.5965 38 1 3.3111 -2.5172 4.3783 39 1 5.4204 -2.5870 4.1793 40 1 5.8997 -4.1564 4.8684 41 1 6.4772 -3.6797 3.2535 42 1 4.9465 -6.2953 4.9199 43 1 4.4157 -8.4387 3.1587 44 1 6.1504 -8.0513 3.0645 45 1 5.8456 -10.5289 4.0802 46 1 6.7242 -13.7200 7.1484 47 1 3.0869 -2.2027 0.1221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343539903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:11 Heat of formation + Delta-G solvation = -93.461269 kcal Electronic energy + Delta-G solvation = -27585.166274 eV Core-core repulsion = 23540.085666 eV Total energy + Delta-G solvation = -4045.080608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85341 -39.70149 -38.59671 -37.89681 -35.23621 -34.64354 -33.89517 -32.43400 -31.83769 -30.47530 -29.50095 -27.96583 -27.50740 -25.12377 -24.27098 -23.27784 -22.79720 -20.76630 -20.01172 -19.63474 -18.73890 -18.16096 -17.45837 -16.50779 -16.09779 -15.89414 -15.61199 -15.39238 -15.20359 -15.03614 -14.86562 -14.34212 -14.10592 -13.87630 -13.82358 -13.67833 -13.48355 -13.19328 -12.82553 -12.71084 -12.59335 -12.48136 -12.25852 -12.23625 -12.14554 -12.01047 -11.65409 -11.53323 -11.27564 -11.14479 -11.11639 -10.87053 -10.67969 -10.10795 -9.80824 -9.74787 -9.07838 -9.03248 -8.84376 -8.39645 -8.35545 -6.45232 -3.98126 1.05737 1.21043 2.45833 2.54933 2.96313 3.01206 3.09738 3.48165 3.49538 3.49994 3.99692 4.32165 4.38939 4.46842 4.48215 4.61837 4.65435 4.69257 4.82560 4.85968 4.96274 5.06827 5.09465 5.18757 5.25285 5.25969 5.35228 5.40283 5.45411 5.55317 5.59800 5.62935 5.70668 5.73104 5.78440 5.82465 5.84127 5.86820 6.07799 6.19206 6.34689 6.39787 6.52066 7.16026 7.38773 7.56618 7.94660 8.19385 8.39860 8.76620 9.24639 9.57201 10.66730 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.001811 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.371065 B =15455.075956 C =15858.147575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.038 4.038 5 C -0.156 4.156 6 C -0.077 4.077 7 C -0.217 4.217 8 C 0.136 3.864 9 O -0.285 6.285 10 C 0.069 3.931 11 H 0.100 0.900 12 C -0.177 4.177 13 C 0.517 3.483 14 O -0.525 6.525 15 N -0.702 5.702 16 C 0.107 3.893 17 C 0.437 3.563 18 O -0.579 6.579 19 N -0.574 5.574 20 C -0.312 4.312 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.872 5.872 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.267 1.267 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.413 0.587 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.375 0.625 46 H 0.276 0.724 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 25.598 -12.228 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.039 4.039 5 C -0.174 4.174 6 C -0.095 4.095 7 C -0.236 4.236 8 C 0.091 3.909 9 O -0.197 6.197 10 C 0.009 3.991 11 H 0.118 0.882 12 C -0.234 4.234 13 C 0.301 3.699 14 O -0.401 6.401 15 N -0.358 5.358 16 C -0.020 4.020 17 C 0.223 3.777 18 O -0.464 6.464 19 N -0.211 5.211 20 C -0.440 4.440 21 H 0.140 0.860 22 C -0.158 4.158 23 N -0.511 5.511 24 Si 0.705 3.295 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.192 1.192 28 C -0.167 4.167 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.251 0.749 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.208 0.792 46 H 0.087 0.913 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.710 25.368 -12.394 29.547 hybrid contribution 0.135 -0.882 -0.419 0.985 sum -8.575 24.487 -12.813 28.936 Atomic orbital electron populations 1.21857 0.94089 1.02229 1.01957 1.20158 0.96116 0.96092 0.95308 1.21852 1.01357 0.94900 1.01960 1.19629 0.95385 0.93918 0.94928 1.20852 1.03142 1.01601 0.91778 1.20919 0.95574 0.94271 0.98696 1.21331 1.05257 1.00569 0.96398 1.19042 0.90924 0.86979 0.93998 1.86205 1.64309 1.37504 1.31676 1.22164 0.99708 0.90379 0.86815 0.88221 1.22352 0.97194 1.01942 1.01954 1.19948 0.77764 0.86489 0.85672 1.90729 1.50457 1.78919 1.19963 1.45530 1.70974 1.08807 1.10523 1.21009 1.02519 0.81422 0.97049 1.19579 0.85174 0.83169 0.89797 1.90538 1.57104 1.67883 1.30877 1.42118 1.62186 1.07947 1.08898 1.19442 1.45556 0.92171 0.86828 0.86036 1.25068 0.96956 0.96239 0.97566 1.69612 1.45518 1.09871 1.26108 0.86674 0.79183 0.80475 0.83185 1.19348 1.19923 1.19220 1.20326 1.01784 0.97171 0.97404 0.92375 0.92293 0.92376 0.90217 0.92309 0.92378 0.92426 0.86088 0.85756 0.85166 0.90597 0.89696 0.90566 0.74873 0.89502 0.89471 0.79201 0.91322 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.00 37.16 0.33 -0.53 16 2 C -0.06 -0.40 3.09 -91.77 -0.28 -0.68 16 3 C -0.14 -0.83 9.01 37.16 0.33 -0.50 16 4 C -0.04 -0.34 4.78 -104.65 -0.50 -0.84 16 5 C -0.16 -1.28 8.71 -39.56 -0.34 -1.63 16 6 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 7 C -0.22 -2.12 8.24 -39.43 -0.33 -2.44 16 8 C 0.14 1.59 6.60 -39.22 -0.26 1.33 16 9 O -0.28 -3.87 9.34 -39.30 -0.37 -4.24 16 10 C 0.07 0.82 2.64 -27.88 -0.07 0.75 16 11 H 0.10 0.98 6.31 -51.93 -0.33 0.66 16 12 C -0.18 -1.70 9.13 37.16 0.34 -1.36 16 13 C 0.52 7.84 7.18 -10.99 -0.08 7.77 16 14 O -0.53 -9.85 16.51 -14.30 -0.24 -10.09 16 15 N -0.70 -10.65 5.49 -61.47 -0.34 -10.99 16 16 C 0.11 1.80 6.15 -5.19 -0.03 1.77 16 17 C 0.44 9.30 7.85 -10.98 -0.09 9.22 16 18 O -0.58 -14.12 15.24 5.55 0.08 -14.03 16 19 N -0.57 -13.06 5.09 -10.96 -0.06 -13.11 16 20 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 21 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 22 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 23 N -0.87 -24.58 13.96 55.50 0.77 -23.81 16 24 Si 0.88 18.74 27.74 -169.99 -4.71 14.03 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 28 C -0.15 -1.59 9.61 -39.44 -0.38 -1.97 16 29 H 0.06 0.33 7.37 -51.93 -0.38 -0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.31 7.40 -51.93 -0.38 -0.07 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.12 0.77 7.10 -52.48 -0.37 0.40 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.13 1.08 5.43 -52.49 -0.28 0.79 16 39 H 0.08 0.62 6.91 -51.93 -0.36 0.26 16 40 H 0.08 0.74 7.92 -51.93 -0.41 0.32 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.41 5.96 7.22 -40.82 -0.29 5.67 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 46 H 0.28 7.17 8.31 -40.82 -0.34 6.84 16 47 H 0.13 1.35 7.94 -52.48 -0.42 0.93 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -32.97 389.77 -7.79 -40.76 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.82 Total: 13.23 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.00 Total: 2.36 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.38 Total: -47.91 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.52 Total: -28.36 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.97 -7.79 -40.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.699 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds