Wall clock time and date at job start Tue Mar 31 2020 18:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47483 * 2 1 4 4 C 1.50705 * 109.47376 * 120.00200 * 2 1 3 5 5 C 1.38285 * 119.97060 * 300.23432 * 4 2 1 6 6 C 1.38240 * 120.11093 * 180.27837 * 5 4 2 7 7 C 1.38171 * 120.05518 * 359.48268 * 6 5 4 8 8 C 1.38705 * 119.93978 * 0.26041 * 7 6 5 9 9 O 1.35904 * 120.05280 * 180.02562 * 8 7 6 10 10 C 1.42902 * 117.00114 * 5.45237 * 9 8 7 11 11 H 1.09006 * 109.47087 * 35.05780 * 10 9 8 12 12 C 1.53004 * 109.47130 * 275.05962 * 10 9 8 13 13 C 1.50700 * 109.47279 * 155.06084 * 10 9 8 14 14 O 1.21276 * 119.99688 * 4.99932 * 13 10 9 15 15 N 1.34772 * 119.99669 * 185.00457 * 13 10 9 16 16 C 1.46505 * 119.99558 * 180.02562 * 15 13 10 17 17 C 1.50704 * 109.46926 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00014 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99802 * 179.97438 * 17 16 15 20 20 C 1.37096 * 119.99951 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99835 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00133 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99972 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99870 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47375 * 90.00033 * 24 22 20 26 26 H 1.48504 * 109.46834 * 210.00337 * 24 22 20 27 27 H 1.48509 * 109.47003 * 329.99656 * 24 22 20 28 28 C 1.38118 * 119.97277 * 119.99712 * 4 2 1 29 29 H 1.09005 * 109.46992 * 299.99622 * 1 2 3 30 30 H 1.09001 * 109.47343 * 59.99490 * 1 2 3 31 31 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46992 * 240.00378 * 2 1 3 33 33 H 1.09002 * 109.46775 * 300.00798 * 3 2 1 34 34 H 1.09007 * 109.46994 * 59.99748 * 3 2 1 35 35 H 1.08996 * 109.47226 * 180.02562 * 3 2 1 36 36 H 1.08003 * 119.94405 * 0.03830 * 5 4 2 37 37 H 1.08007 * 119.97341 * 179.76379 * 6 5 4 38 38 H 1.08001 * 120.02510 * 180.27585 * 7 6 5 39 39 H 1.08998 * 109.46878 * 59.99860 * 12 10 9 40 40 H 1.08998 * 109.47334 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47249 * 299.99876 * 12 10 9 42 42 H 0.96999 * 120.00675 * 359.97438 * 15 13 10 43 43 H 1.08999 * 109.46954 * 299.99456 * 16 15 13 44 44 H 1.08995 * 109.47391 * 59.99317 * 16 15 13 45 45 H 0.96998 * 120.00088 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00371 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.02986 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6940 -0.2404 2.4862 6 6 2.1580 -0.8864 3.6168 7 6 2.9525 -2.0102 3.4947 8 6 3.2890 -2.4868 2.2363 9 8 4.0699 -3.5922 2.1135 10 6 4.4102 -4.2832 3.3172 11 1 3.5733 -4.2330 4.0139 12 6 5.6404 -3.6297 3.9501 13 6 4.7143 -5.7247 3.0002 14 8 4.7352 -6.1006 1.8474 15 7 4.9629 -6.5960 3.9979 16 6 5.2592 -7.9973 3.6896 17 6 5.4982 -8.7538 4.9709 18 8 5.4276 -8.1791 6.0367 19 7 5.7894 -10.0692 4.9325 20 6 6.0064 -10.7575 6.0982 21 1 5.9435 -10.2458 7.0472 22 6 6.3072 -12.1135 6.0586 23 7 6.5146 -12.7733 7.1759 24 14 6.4166 -12.9984 4.4172 25 1 7.8101 -12.9281 3.9089 26 1 6.0253 -14.4200 4.5942 27 1 5.5012 -12.3506 3.4436 28 6 2.8264 -1.8334 1.1030 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.0694 0.6353 2.5837 37 1 1.8954 -0.5151 4.5965 38 1 3.3111 -2.5172 4.3783 39 1 5.4204 -2.5870 4.1793 40 1 5.8997 -4.1564 4.8684 41 1 6.4772 -3.6797 3.2535 42 1 4.9465 -6.2953 4.9199 43 1 4.4157 -8.4387 3.1587 44 1 6.1504 -8.0513 3.0645 45 1 5.8456 -10.5289 4.0802 46 1 6.7242 -13.7200 7.1484 47 1 3.0869 -2.2027 0.1221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343539903.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:10 Heat of formation + Delta-G solvation = -115.034980 kcal Electronic energy + Delta-G solvation = -27586.101780 eV Core-core repulsion = 23540.085666 eV Total energy + Delta-G solvation = -4046.016114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79183 -40.87541 -40.07290 -38.90014 -36.33582 -35.83577 -35.47876 -33.86534 -33.31002 -31.21945 -30.19016 -29.42878 -27.95619 -26.58444 -25.47394 -24.08857 -23.51016 -21.76454 -21.51742 -20.89074 -20.43506 -19.05247 -18.63181 -17.64774 -17.16230 -17.03961 -16.87524 -16.66611 -16.37650 -16.29297 -15.86178 -15.54652 -15.29881 -14.92690 -14.63975 -14.47647 -14.40824 -14.32081 -14.24499 -14.06416 -13.78729 -13.49545 -13.30858 -13.06297 -12.98064 -12.89390 -12.72045 -12.45642 -12.33341 -12.15682 -12.01560 -11.85454 -11.65831 -11.59277 -11.48931 -11.01059 -10.68098 -10.37089 -10.28715 -9.77203 -9.15800 -8.46506 -6.08484 0.36529 0.47861 1.30009 1.33016 1.36502 1.40403 1.44553 1.77340 2.19319 2.43155 2.79672 2.84308 3.09761 3.42581 3.66837 3.74388 3.81602 3.89877 3.96253 4.01707 4.20387 4.33191 4.35234 4.36564 4.38214 4.39747 4.55152 4.60700 4.63202 4.73106 4.84150 5.01410 5.01812 5.05552 5.06507 5.11162 5.21709 5.31479 5.36446 5.41217 5.46667 5.53435 5.68835 5.84423 5.86949 6.27850 6.43459 6.46819 6.76906 6.98211 7.27742 7.75660 8.69686 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029832 B = 0.001811 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.371065 B =15455.075956 C =15858.147575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.040 4.040 5 C -0.155 4.155 6 C -0.078 4.078 7 C -0.222 4.222 8 C 0.112 3.888 9 O -0.311 6.311 10 C 0.073 3.927 11 H 0.121 0.879 12 C -0.171 4.171 13 C 0.519 3.481 14 O -0.563 6.563 15 N -0.700 5.700 16 C 0.117 3.883 17 C 0.446 3.554 18 O -0.612 6.612 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.065 0.935 22 C -0.006 4.006 23 N -0.924 5.924 24 Si 0.957 3.043 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.233 1.233 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.417 0.583 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.392 0.608 46 H 0.281 0.719 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 27.211 -13.920 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.197 4.197 4 C -0.040 4.040 5 C -0.173 4.173 6 C -0.095 4.095 7 C -0.241 4.241 8 C 0.067 3.933 9 O -0.224 6.224 10 C 0.013 3.987 11 H 0.139 0.861 12 C -0.228 4.228 13 C 0.305 3.695 14 O -0.442 6.442 15 N -0.355 5.355 16 C -0.010 4.010 17 C 0.233 3.767 18 O -0.497 6.497 19 N -0.217 5.217 20 C -0.460 4.460 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.564 5.564 24 Si 0.777 3.223 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.157 1.157 28 C -0.188 4.188 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.257 0.743 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.227 0.773 46 H 0.091 0.909 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.690 27.019 -14.084 31.973 hybrid contribution 0.384 -1.228 0.181 1.299 sum -9.306 25.790 -13.903 30.742 Atomic orbital electron populations 1.21843 0.93244 1.01835 1.02953 1.20211 0.96747 0.96560 0.94287 1.21832 1.00844 0.94141 1.02931 1.19879 0.94621 0.93260 0.96208 1.21174 1.02754 1.02008 0.91353 1.21281 0.94643 0.93573 1.00038 1.21525 1.05432 1.01107 0.95990 1.19273 0.91837 0.87039 0.95141 1.86155 1.65163 1.38493 1.32635 1.22208 1.01393 0.88181 0.86880 0.86112 1.22339 0.95742 1.02939 1.01788 1.20503 0.76488 0.87641 0.84829 1.90708 1.52220 1.79795 1.21428 1.45522 1.70860 1.08264 1.10896 1.20925 1.04156 0.81735 0.94205 1.20404 0.82536 0.82750 0.90961 1.90528 1.57654 1.68606 1.32954 1.41927 1.63119 1.08412 1.08245 1.19037 1.47511 0.92961 0.86531 0.91642 1.26037 0.95663 0.96580 1.02378 1.69771 1.46772 1.10553 1.29288 0.85471 0.80357 0.78665 0.77800 1.18125 1.19866 1.15681 1.20479 1.02947 0.98285 0.97093 0.91638 0.91062 0.93449 0.90691 0.91112 0.91647 0.93221 0.83862 0.83164 0.83842 0.88853 0.88635 0.91616 0.74347 0.87736 0.87544 0.77252 0.90914 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.00 71.98 0.65 -0.82 16 2 C -0.06 -0.75 3.09 -11.54 -0.04 -0.78 16 3 C -0.14 -1.37 9.01 71.98 0.65 -0.72 16 4 C -0.04 -0.66 4.78 -19.88 -0.10 -0.76 16 5 C -0.15 -2.20 8.71 22.28 0.19 -2.00 16 6 C -0.08 -1.12 10.04 22.25 0.22 -0.89 16 7 C -0.22 -3.96 8.24 22.37 0.18 -3.77 16 8 C 0.11 2.57 6.60 22.50 0.15 2.72 16 9 O -0.31 -8.43 9.34 -73.48 -0.69 -9.11 16 10 C 0.07 1.65 2.64 29.85 0.08 1.73 16 11 H 0.12 2.18 6.31 -2.38 -0.02 2.17 16 12 C -0.17 -3.04 9.13 71.98 0.66 -2.38 16 13 C 0.52 15.24 7.18 87.66 0.63 15.87 16 14 O -0.56 -20.80 16.51 15.97 0.26 -20.54 16 15 N -0.70 -20.27 5.49 -466.79 -2.56 -22.83 16 16 C 0.12 3.70 6.15 85.63 0.53 4.23 16 17 C 0.45 18.76 7.85 87.66 0.69 19.44 16 18 O -0.61 -30.19 15.24 -3.07 -0.05 -30.23 16 19 N -0.58 -25.92 5.09 -306.97 -1.56 -27.48 16 20 C -0.33 -18.47 10.16 84.04 0.85 -17.62 16 21 H 0.07 4.30 7.39 -2.91 -0.02 4.28 16 22 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 23 N -0.92 -53.65 13.96 21.66 0.30 -53.34 16 24 Si 0.96 37.67 27.74 68.60 1.90 39.57 16 25 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.23 -7.85 6.52 99.48 0.65 -7.21 16 28 C -0.17 -3.67 9.61 22.36 0.21 -3.45 16 29 H 0.06 0.58 7.37 -2.38 -0.02 0.56 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.99 7.87 -2.38 -0.02 0.97 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.54 7.40 -2.38 -0.02 0.53 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.14 1.36 7.10 -2.91 -0.02 1.34 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 2.04 5.43 -2.91 -0.02 2.03 16 39 H 0.09 1.34 6.91 -2.39 -0.02 1.32 16 40 H 0.09 1.48 7.92 -2.39 -0.02 1.47 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.42 11.57 7.22 -92.71 -0.67 10.90 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.39 14.80 5.76 -92.71 -0.53 14.27 16 46 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 47 H 0.12 2.68 7.94 -2.91 -0.02 2.66 16 Total: -1.00 -75.14 389.77 3.39 -71.75 By element: Atomic # 1 Polarization: 41.55 SS G_CDS: -0.26 Total: 41.30 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.03 Total: 10.92 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.82 Total: -103.66 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -0.47 Total: -59.89 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.90 Total: 39.57 kcal Total: -75.14 3.39 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539903.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.283 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds