Wall clock time and date at job start Tue Mar 31 2020 18:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 C 1.50694 * 109.47033 * 120.00285 * 2 1 3 5 5 C 1.38293 * 119.97061 * 299.99458 * 4 2 1 6 6 C 1.38243 * 120.10773 * 179.97438 * 5 4 2 7 7 C 1.38159 * 120.05963 * 0.02562 * 6 5 4 8 8 C 1.38718 * 119.94490 * 359.97438 * 7 6 5 9 9 O 1.35900 * 120.05476 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00314 * 354.63102 * 9 8 7 11 11 H 1.09008 * 109.47409 * 324.82664 * 10 9 8 12 12 C 1.53000 * 109.47279 * 84.82878 * 10 9 8 13 13 C 1.50704 * 109.47181 * 204.83092 * 10 9 8 14 14 O 1.21283 * 119.99771 * 0.02562 * 13 10 9 15 15 N 1.34773 * 119.99970 * 179.97438 * 13 10 9 16 16 C 1.46503 * 119.99750 * 179.97438 * 15 13 10 17 17 C 1.50709 * 109.46895 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99932 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99583 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99586 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38943 * 119.99977 * 180.02562 * 20 19 17 23 23 N 1.31421 * 120.00016 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47327 * 89.99516 * 24 22 20 26 26 H 1.48504 * 109.47260 * 210.00110 * 24 22 20 27 27 H 1.48502 * 109.46699 * 329.99228 * 24 22 20 28 28 C 1.38124 * 119.97295 * 120.23349 * 4 2 1 29 29 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47063 * 299.99922 * 1 2 3 31 31 H 1.09006 * 109.47099 * 59.99820 * 1 2 3 32 32 H 1.09007 * 109.46857 * 240.00371 * 2 1 3 33 33 H 1.09006 * 109.47252 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47306 * 300.00052 * 3 2 1 35 35 H 1.08997 * 109.47542 * 60.00419 * 3 2 1 36 36 H 1.08002 * 119.94215 * 0.02562 * 5 4 2 37 37 H 1.08004 * 119.97167 * 180.02562 * 6 5 4 38 38 H 1.08005 * 120.03304 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46750 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47017 * 299.99571 * 12 10 9 41 41 H 1.08997 * 109.46968 * 60.00068 * 12 10 9 42 42 H 0.97003 * 120.00021 * 0.02562 * 15 13 10 43 43 H 1.08997 * 109.47227 * 300.00327 * 16 15 13 44 44 H 1.08991 * 109.47167 * 60.00642 * 16 15 13 45 45 H 0.96996 * 120.00202 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00058 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.02820 * 0.03897 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6979 -0.2374 2.4861 6 6 2.1567 -0.8873 3.6168 7 6 2.9512 -2.0110 3.4947 8 6 3.2880 -2.4875 2.2362 9 8 4.0698 -3.5923 2.1135 10 6 4.6065 -4.1442 3.3173 11 1 4.8397 -3.3389 4.0139 12 6 3.5785 -5.0843 3.9502 13 6 5.8629 -4.9138 3.0006 14 8 6.2598 -4.9825 1.8566 15 7 6.5460 -5.5249 3.9887 16 6 7.7671 -6.2736 3.6806 17 6 8.3332 -6.8555 4.9503 18 8 7.7722 -6.6634 6.0084 19 7 9.4635 -7.5886 4.9101 20 6 9.9788 -8.1176 6.0652 21 1 9.4793 -7.9465 7.0073 22 6 11.1443 -8.8728 6.0239 23 7 11.7525 -9.0806 4.8775 24 14 11.8462 -9.5943 7.5975 25 1 11.2732 -10.9458 7.8211 26 1 13.3231 -9.6958 7.4799 27 1 11.5003 -8.7143 8.7427 28 6 2.8304 -1.8306 1.1030 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.0767 0.6406 2.5836 37 1 1.8939 -0.5162 4.5964 38 1 3.3097 -2.5181 4.3783 39 1 3.9882 -5.5056 4.8682 40 1 2.6699 -4.5276 4.1793 41 1 3.3454 -5.8896 3.2536 42 1 6.2287 -5.4697 4.9037 43 1 7.5335 -7.0792 2.9846 44 1 8.4994 -5.6043 3.2292 45 1 9.9123 -7.7419 4.0640 46 1 12.5659 -9.6081 4.8486 47 1 3.0949 -2.1970 0.1220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343539909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:14 Heat of formation + Delta-G solvation = -100.589927 kcal Electronic energy + Delta-G solvation = -27525.652482 eV Core-core repulsion = 23480.262752 eV Total energy + Delta-G solvation = -4045.389730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81059 -39.62259 -38.45832 -37.79870 -35.21071 -34.56235 -33.82341 -32.37122 -31.41278 -30.43840 -29.47300 -27.73787 -27.48806 -25.09919 -24.36030 -23.28854 -22.77442 -20.73111 -19.94231 -19.56866 -18.22816 -18.11888 -17.45560 -16.45431 -16.05971 -15.83420 -15.52038 -15.36716 -15.10782 -14.98926 -14.59233 -14.27393 -14.04031 -13.93709 -13.80540 -13.66059 -13.46912 -13.40717 -12.77736 -12.68811 -12.48530 -12.27115 -12.22751 -12.03563 -11.94220 -11.67077 -11.62142 -11.50094 -11.16094 -11.11075 -11.08791 -10.84320 -10.48988 -10.35551 -9.72972 -9.67854 -9.05312 -8.92640 -8.69574 -8.36564 -8.14638 -6.55326 -3.97710 1.08230 1.23732 2.50899 2.64585 3.08912 3.19856 3.24789 3.52364 3.55007 3.68576 4.07560 4.34594 4.45070 4.50508 4.65266 4.68514 4.74069 4.80935 4.84642 4.88975 4.98499 5.09323 5.13048 5.21534 5.27142 5.28399 5.39152 5.43778 5.47260 5.57710 5.65052 5.80723 5.82799 5.85979 5.87036 5.88836 5.89125 6.00478 6.10728 6.21510 6.37196 6.51581 6.56251 7.20044 7.42253 7.65005 7.87247 8.28192 8.40375 9.00204 9.34340 9.81714 10.61363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.001721 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.470073 B =16263.915006 C =16589.781385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.038 4.038 5 C -0.156 4.156 6 C -0.077 4.077 7 C -0.217 4.217 8 C 0.137 3.863 9 O -0.284 6.284 10 C 0.069 3.931 11 H 0.100 0.900 12 C -0.177 4.177 13 C 0.516 3.484 14 O -0.525 6.525 15 N -0.701 5.701 16 C 0.110 3.890 17 C 0.427 3.573 18 O -0.598 6.598 19 N -0.547 5.547 20 C -0.306 4.306 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.893 5.893 24 Si 0.934 3.066 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.269 1.269 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.412 0.588 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.396 0.604 46 H 0.275 0.725 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 16.997 -6.812 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.039 4.039 5 C -0.174 4.174 6 C -0.095 4.095 7 C -0.236 4.236 8 C 0.091 3.909 9 O -0.197 6.197 10 C 0.009 3.991 11 H 0.118 0.882 12 C -0.235 4.235 13 C 0.300 3.700 14 O -0.401 6.401 15 N -0.357 5.357 16 C -0.017 4.017 17 C 0.213 3.787 18 O -0.485 6.485 19 N -0.182 5.182 20 C -0.436 4.436 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.533 5.533 24 Si 0.760 3.240 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.193 1.193 28 C -0.167 4.167 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.250 0.750 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.230 0.770 46 H 0.085 0.915 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.232 16.832 -7.154 27.273 hybrid contribution 0.652 -0.534 0.934 1.258 sum -19.580 16.298 -6.220 26.224 Atomic orbital electron populations 1.21851 0.94123 1.02149 1.01942 1.20154 0.96062 0.96127 0.95326 1.21855 1.01452 0.94881 1.01936 1.19628 0.95339 0.93976 0.94919 1.20846 1.03323 1.01464 0.91780 1.20909 0.95721 0.94184 0.98672 1.21330 1.05000 1.00851 0.96407 1.19048 0.91276 0.86557 0.93986 1.86204 1.61796 1.39942 1.31715 1.22172 0.93125 0.96996 0.86771 0.88208 1.22365 0.98960 1.00204 1.01974 1.19939 0.84427 0.80038 0.85621 1.90734 1.68512 1.60478 1.20362 1.45550 1.26270 1.52484 1.11434 1.20989 0.86788 0.96616 0.97339 1.19688 0.84264 0.85207 0.89567 1.90492 1.61990 1.64740 1.31279 1.41793 1.21318 1.44050 1.10992 1.19735 1.06968 1.28703 0.88180 0.87623 1.25338 0.96459 0.97191 0.98684 1.69616 1.19377 1.39315 1.25006 0.85800 0.77842 0.79297 0.81013 1.20237 1.20772 1.19312 1.20333 1.02102 0.96825 0.97430 0.92428 0.92390 0.92316 0.90205 0.92369 0.92309 0.92387 0.86111 0.85794 0.85188 0.89720 0.90658 0.90562 0.75013 0.89604 0.89631 0.76990 0.91530 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.01 37.16 0.33 -0.52 16 2 C -0.06 -0.41 3.09 -91.78 -0.28 -0.70 16 3 C -0.14 -0.90 9.01 37.15 0.33 -0.56 16 4 C -0.04 -0.35 4.78 -104.65 -0.50 -0.85 16 5 C -0.16 -1.32 8.71 -39.56 -0.34 -1.66 16 6 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 7 C -0.22 -2.18 8.24 -39.43 -0.32 -2.51 16 8 C 0.14 1.65 6.60 -39.21 -0.26 1.39 16 9 O -0.28 -4.00 9.33 -39.34 -0.37 -4.37 16 10 C 0.07 0.86 2.64 -27.88 -0.07 0.79 16 11 H 0.10 1.03 6.32 -51.92 -0.33 0.71 16 12 C -0.18 -1.78 9.07 37.16 0.34 -1.45 16 13 C 0.52 8.22 7.23 -10.99 -0.08 8.14 16 14 O -0.53 -10.33 16.50 -14.36 -0.24 -10.56 16 15 N -0.70 -11.23 5.42 -61.47 -0.33 -11.56 16 16 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 17 C 0.43 9.54 7.85 -10.98 -0.09 9.45 16 18 O -0.60 -14.82 15.24 5.55 0.08 -14.73 16 19 N -0.55 -13.32 5.29 -10.96 -0.06 -13.38 16 20 C -0.31 -8.20 9.68 -14.93 -0.14 -8.34 16 21 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 22 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 23 N -0.89 -23.57 13.05 55.50 0.72 -22.85 16 24 Si 0.93 20.26 29.55 -169.99 -5.02 15.24 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 28 C -0.15 -1.64 9.61 -39.43 -0.38 -2.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.32 7.39 -51.93 -0.38 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.34 7.39 -51.93 -0.38 -0.05 16 36 H 0.12 0.79 7.10 -52.49 -0.37 0.42 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.13 1.11 5.43 -52.48 -0.28 0.83 16 39 H 0.08 0.77 7.56 -51.93 -0.39 0.38 16 40 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.41 6.24 6.86 -40.82 -0.28 5.96 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.40 9.30 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.13 1.39 7.94 -52.48 -0.42 0.98 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -31.89 392.08 -8.12 -40.01 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.82 Total: 13.67 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.99 Total: 2.62 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.33 Total: -47.78 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.52 Total: -29.66 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.89 -8.12 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.576 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds