Wall clock time and date at job start Tue Mar 31 2020 18:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 C 1.50694 * 109.47033 * 120.00285 * 2 1 3 5 5 C 1.38293 * 119.97061 * 299.99458 * 4 2 1 6 6 C 1.38243 * 120.10773 * 179.97438 * 5 4 2 7 7 C 1.38159 * 120.05963 * 0.02562 * 6 5 4 8 8 C 1.38718 * 119.94490 * 359.97438 * 7 6 5 9 9 O 1.35900 * 120.05476 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00314 * 354.63102 * 9 8 7 11 11 H 1.09008 * 109.47409 * 324.82664 * 10 9 8 12 12 C 1.53000 * 109.47279 * 84.82878 * 10 9 8 13 13 C 1.50704 * 109.47181 * 204.83092 * 10 9 8 14 14 O 1.21283 * 119.99771 * 0.02562 * 13 10 9 15 15 N 1.34773 * 119.99970 * 179.97438 * 13 10 9 16 16 C 1.46503 * 119.99750 * 179.97438 * 15 13 10 17 17 C 1.50709 * 109.46895 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99932 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99583 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99586 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99788 * 359.97438 * 20 19 17 22 22 C 1.38943 * 119.99977 * 180.02562 * 20 19 17 23 23 N 1.31421 * 120.00016 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00316 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47327 * 89.99516 * 24 22 20 26 26 H 1.48504 * 109.47260 * 210.00110 * 24 22 20 27 27 H 1.48502 * 109.46699 * 329.99228 * 24 22 20 28 28 C 1.38124 * 119.97295 * 120.23349 * 4 2 1 29 29 H 1.08995 * 109.47354 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47063 * 299.99922 * 1 2 3 31 31 H 1.09006 * 109.47099 * 59.99820 * 1 2 3 32 32 H 1.09007 * 109.46857 * 240.00371 * 2 1 3 33 33 H 1.09006 * 109.47252 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47306 * 300.00052 * 3 2 1 35 35 H 1.08997 * 109.47542 * 60.00419 * 3 2 1 36 36 H 1.08002 * 119.94215 * 0.02562 * 5 4 2 37 37 H 1.08004 * 119.97167 * 180.02562 * 6 5 4 38 38 H 1.08005 * 120.03304 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46750 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47017 * 299.99571 * 12 10 9 41 41 H 1.08997 * 109.46968 * 60.00068 * 12 10 9 42 42 H 0.97003 * 120.00021 * 0.02562 * 15 13 10 43 43 H 1.08997 * 109.47227 * 300.00327 * 16 15 13 44 44 H 1.08991 * 109.47167 * 60.00642 * 16 15 13 45 45 H 0.96996 * 120.00202 * 359.97438 * 19 17 16 46 46 H 0.96996 * 120.00058 * 180.02562 * 23 22 20 47 47 H 1.08003 * 120.02820 * 0.03897 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6979 -0.2374 2.4861 6 6 2.1567 -0.8873 3.6168 7 6 2.9512 -2.0110 3.4947 8 6 3.2880 -2.4875 2.2362 9 8 4.0698 -3.5923 2.1135 10 6 4.6065 -4.1442 3.3173 11 1 4.8397 -3.3389 4.0139 12 6 3.5785 -5.0843 3.9502 13 6 5.8629 -4.9138 3.0006 14 8 6.2598 -4.9825 1.8566 15 7 6.5460 -5.5249 3.9887 16 6 7.7671 -6.2736 3.6806 17 6 8.3332 -6.8555 4.9503 18 8 7.7722 -6.6634 6.0084 19 7 9.4635 -7.5886 4.9101 20 6 9.9788 -8.1176 6.0652 21 1 9.4793 -7.9465 7.0073 22 6 11.1443 -8.8728 6.0239 23 7 11.7525 -9.0806 4.8775 24 14 11.8462 -9.5943 7.5975 25 1 11.2732 -10.9458 7.8211 26 1 13.3231 -9.6958 7.4799 27 1 11.5003 -8.7143 8.7427 28 6 2.8304 -1.8306 1.1030 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.0767 0.6406 2.5836 37 1 1.8939 -0.5162 4.5964 38 1 3.3097 -2.5181 4.3783 39 1 3.9882 -5.5056 4.8682 40 1 2.6699 -4.5276 4.1793 41 1 3.3454 -5.8896 3.2536 42 1 6.2287 -5.4697 4.9037 43 1 7.5335 -7.0792 2.9846 44 1 8.4994 -5.6043 3.2292 45 1 9.9123 -7.7419 4.0640 46 1 12.5659 -9.6081 4.8486 47 1 3.0949 -2.1970 0.1220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343539909.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:13 Heat of formation + Delta-G solvation = -120.157341 kcal Electronic energy + Delta-G solvation = -27526.500989 eV Core-core repulsion = 23480.262752 eV Total energy + Delta-G solvation = -4046.238236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78895 -40.82260 -39.97467 -38.89363 -36.29566 -35.83562 -35.46043 -33.48749 -33.21575 -31.21402 -30.18834 -29.26263 -27.95521 -26.66549 -25.54838 -24.10858 -23.51219 -21.77773 -21.44670 -20.75781 -20.07998 -19.06557 -18.65770 -17.60016 -17.16480 -17.04049 -16.73555 -16.67011 -16.34242 -16.19337 -15.88062 -15.68328 -15.36067 -15.04557 -14.61825 -14.47541 -14.39672 -14.24486 -14.02343 -13.75086 -13.55417 -13.49280 -13.30126 -13.05912 -12.91804 -12.88896 -12.71729 -12.46117 -12.33208 -12.15662 -12.12727 -11.85424 -11.65721 -11.57543 -11.48848 -11.01137 -10.58210 -10.32690 -10.10175 -9.77133 -9.15667 -8.51702 -6.02143 0.36636 0.47982 1.33821 1.37036 1.41479 1.46249 1.56601 1.89151 2.26230 2.48885 2.79824 3.08138 3.15485 3.42703 3.66423 3.74303 3.81436 3.89991 4.01264 4.17755 4.21007 4.33258 4.37325 4.38312 4.38749 4.40246 4.55038 4.60846 4.63255 4.73147 4.84299 5.01477 5.01877 5.05693 5.06623 5.13148 5.21839 5.31490 5.36700 5.37844 5.41364 5.53411 5.68885 5.84754 5.90512 6.28777 6.43478 6.47264 6.99261 7.02644 7.42641 7.92131 8.65038 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.001721 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.470073 B =16263.915006 C =16589.781385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.039 4.039 5 C -0.155 4.155 6 C -0.077 4.077 7 C -0.222 4.222 8 C 0.112 3.888 9 O -0.312 6.312 10 C 0.075 3.925 11 H 0.123 0.877 12 C -0.171 4.171 13 C 0.517 3.483 14 O -0.567 6.567 15 N -0.696 5.696 16 C 0.121 3.879 17 C 0.434 3.566 18 O -0.621 6.621 19 N -0.559 5.559 20 C -0.338 4.338 21 H 0.088 0.912 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.269 1.269 28 C -0.170 4.170 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.418 0.582 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.399 0.601 46 H 0.280 0.720 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.785 18.338 -5.717 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.040 4.040 5 C -0.173 4.173 6 C -0.095 4.095 7 C -0.240 4.240 8 C 0.067 3.933 9 O -0.226 6.226 10 C 0.015 3.985 11 H 0.141 0.859 12 C -0.228 4.228 13 C 0.303 3.697 14 O -0.445 6.445 15 N -0.352 5.352 16 C -0.007 4.007 17 C 0.221 3.779 18 O -0.509 6.509 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.106 0.894 22 C -0.211 4.211 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.194 1.194 28 C -0.189 4.189 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.257 0.743 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.233 0.767 46 H 0.089 0.911 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.610 18.185 -6.060 28.886 hybrid contribution 0.996 -0.862 0.539 1.423 sum -20.614 17.323 -5.521 27.486 Atomic orbital electron populations 1.21831 0.93000 1.01940 1.02958 1.20208 0.96924 0.96423 0.94261 1.21841 1.00728 0.94309 1.02978 1.19880 0.94562 0.93255 0.96261 1.21179 1.02886 1.01878 0.91309 1.21282 0.94704 0.93405 1.00067 1.21530 1.05172 1.01407 0.95933 1.19288 0.92180 0.86646 0.95208 1.86152 1.62659 1.41086 1.32686 1.22201 0.91829 0.97601 0.86862 0.85927 1.22354 0.99095 0.99593 1.01786 1.20593 0.85054 0.79366 0.84718 1.90711 1.69776 1.62030 1.22003 1.45505 1.25615 1.52211 1.11887 1.20815 0.87756 0.97172 0.94948 1.20313 0.83229 0.83783 0.90578 1.90470 1.62438 1.65213 1.32796 1.41845 1.22127 1.44852 1.10573 1.19758 1.08057 1.30460 0.88401 0.89357 1.26138 0.96236 0.96973 1.01783 1.69685 1.19722 1.39629 1.26553 0.84854 0.77394 0.78486 0.77173 1.19574 1.19783 1.19358 1.20484 1.03373 0.97981 0.97069 0.93245 0.91577 0.91109 0.90785 0.93494 0.91062 0.91568 0.83778 0.83049 0.83791 0.88579 0.88701 0.91707 0.74290 0.88648 0.88692 0.76729 0.91086 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.01 71.98 0.65 -0.78 16 2 C -0.06 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -1.53 9.01 71.98 0.65 -0.89 16 4 C -0.04 -0.68 4.78 -19.88 -0.10 -0.78 16 5 C -0.15 -2.25 8.71 22.28 0.19 -2.06 16 6 C -0.08 -1.13 10.04 22.25 0.22 -0.91 16 7 C -0.22 -4.08 8.24 22.37 0.18 -3.89 16 8 C 0.11 2.67 6.60 22.51 0.15 2.82 16 9 O -0.31 -8.91 9.33 -73.39 -0.68 -9.59 16 10 C 0.07 1.79 2.64 29.85 0.08 1.87 16 11 H 0.12 2.35 6.32 -2.38 -0.02 2.33 16 12 C -0.17 -3.21 9.07 71.98 0.65 -2.56 16 13 C 0.52 16.37 7.23 87.66 0.63 17.01 16 14 O -0.57 -22.64 16.50 16.00 0.26 -22.38 16 15 N -0.70 -21.90 5.42 -466.78 -2.53 -24.43 16 16 C 0.12 4.31 6.15 85.64 0.53 4.84 16 17 C 0.43 19.45 7.85 87.66 0.69 20.14 16 18 O -0.62 -30.81 15.24 -3.06 -0.05 -30.86 16 19 N -0.56 -27.56 5.29 -306.98 -1.62 -29.18 16 20 C -0.34 -18.28 9.68 84.04 0.81 -17.47 16 21 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 22 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 23 N -0.92 -48.26 13.05 21.66 0.28 -47.98 16 24 Si 1.00 41.20 29.55 68.60 2.03 43.23 16 25 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 C -0.17 -3.85 9.61 22.37 0.21 -3.64 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.57 7.39 -2.39 -0.02 0.55 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 1.04 7.87 -2.38 -0.02 1.02 16 33 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.07 0.61 7.39 -2.39 -0.02 0.59 16 36 H 0.14 1.40 7.10 -2.91 -0.02 1.37 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 2.11 5.43 -2.91 -0.02 2.10 16 39 H 0.10 1.57 7.56 -2.38 -0.02 1.56 16 40 H 0.09 1.42 6.90 -2.39 -0.02 1.40 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.42 12.27 6.86 -92.71 -0.64 11.63 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.10 3.26 8.14 -2.39 -0.02 3.25 16 45 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.12 2.79 7.94 -2.91 -0.02 2.77 16 Total: -1.00 -69.18 392.08 3.32 -65.86 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.36 Total: 42.52 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 5.99 Total: 12.81 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -3.87 Total: -101.59 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -0.47 Total: -62.83 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -69.18 3.32 -65.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539909.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.301 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds