Wall clock time and date at job start Tue Mar 31 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99723 * 2 1 4 4 O 1.20823 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99701 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47093 * 60.00366 * 5 3 2 7 7 C 1.52999 * 109.47332 * 299.99913 * 5 3 2 8 8 N 1.46897 * 109.47165 * 179.97438 * 5 3 2 9 9 C 1.46904 * 110.99879 * 66.04662 * 8 5 3 10 10 C 1.46899 * 111.00265 * 190.00206 * 8 5 3 11 11 C 1.50697 * 109.47171 * 170.00442 * 10 8 5 12 12 O 1.21284 * 120.00234 * 354.07794 * 11 10 8 13 13 N 1.34784 * 119.99899 * 174.08220 * 11 10 8 14 14 C 1.46496 * 120.00004 * 185.14560 * 13 11 10 15 15 C 1.50706 * 109.47101 * 89.99782 * 14 13 11 16 16 H 1.07998 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99591 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00444 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99518 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47289 * 59.99789 * 19 17 15 21 21 H 1.48500 * 109.46932 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46908 * 299.99569 * 19 17 15 23 23 C 1.39921 * 119.99866 * 5.14201 * 13 11 10 24 24 C 1.38871 * 120.07560 * 290.93773 * 23 13 11 25 25 C 1.38112 * 119.92989 * 179.74923 * 24 23 13 26 26 C 1.38284 * 120.06907 * 0.52618 * 25 24 23 27 27 C 1.38271 * 120.14144 * 359.74721 * 26 25 24 28 28 C 1.38113 * 120.07515 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47228 * 299.99943 * 1 2 3 31 31 H 1.08997 * 109.47494 * 60.00008 * 1 2 3 32 32 H 1.08998 * 109.47402 * 300.00265 * 7 5 3 33 33 H 1.09005 * 109.46724 * 60.00140 * 7 5 3 34 34 H 1.08994 * 109.47210 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47058 * 183.95323 * 9 8 5 36 36 H 1.09004 * 109.47318 * 303.95536 * 9 8 5 37 37 H 1.09004 * 109.46910 * 63.95173 * 9 8 5 38 38 H 1.08997 * 109.47095 * 49.99893 * 10 8 5 39 39 H 1.09006 * 109.46998 * 290.00178 * 10 8 5 40 40 H 1.08994 * 109.47511 * 209.99928 * 14 13 11 41 41 H 1.09002 * 109.47274 * 329.99982 * 14 13 11 42 42 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 43 43 H 1.07995 * 120.03125 * 0.02562 * 24 23 13 44 44 H 1.08006 * 119.96209 * 180.27202 * 25 24 23 45 45 H 1.08004 * 119.92451 * 179.72503 * 26 25 24 46 46 H 1.07999 * 119.96358 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.03753 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5816 1.2502 8 7 3.9828 2.6835 -0.0002 9 6 3.5976 3.3471 1.2526 10 6 5.4273 2.8053 -0.2378 11 6 5.7770 4.2517 -0.4758 12 8 4.8975 5.0829 -0.5569 13 7 7.0673 4.6217 -0.5986 14 6 7.4145 6.0399 -0.7170 15 6 7.6419 6.6177 0.6562 16 1 7.5385 5.9911 1.5297 17 6 7.9819 7.9464 0.7973 18 7 8.1083 8.7094 -0.2663 19 14 8.2645 8.6624 2.4994 20 1 9.3755 7.9352 3.1642 21 1 8.6164 10.1001 2.3794 22 1 7.0267 8.5211 3.3075 23 6 8.0750 3.6511 -0.6130 24 6 8.3657 2.9325 0.5393 25 6 9.3575 1.9715 0.5203 26 6 10.0681 1.7321 -0.6415 27 6 9.7850 2.4498 -1.7890 28 6 8.7905 3.4082 -1.7782 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.7228 1.0758 2.1399 33 1 3.8038 -0.4637 1.2502 34 1 5.2013 0.6382 1.2503 35 1 3.8548 4.4048 1.1975 36 1 2.5233 3.2418 1.4042 37 1 4.1288 2.8868 2.0858 38 1 5.7025 2.2162 -1.1126 39 1 5.9710 2.4386 0.6329 40 1 8.3234 6.1433 -1.3097 41 1 6.5995 6.5741 -1.2055 42 1 8.3479 9.6441 -0.1670 43 1 7.8137 3.1219 1.4480 44 1 9.5810 1.4093 1.4150 45 1 10.8462 0.9832 -0.6525 46 1 10.3421 2.2608 -2.6947 47 1 8.5696 3.9681 -2.6749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361640363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:17 Heat of formation + Delta-G solvation = -63.181229 kcal Electronic energy + Delta-G solvation = -29662.552894 eV Core-core repulsion = 25618.785327 eV Total energy + Delta-G solvation = -4043.767567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.81589 -39.96265 -38.44371 -37.36285 -36.16911 -34.78696 -32.72059 -31.35725 -30.72270 -29.41649 -28.51614 -27.87208 -26.76080 -25.75981 -23.59681 -22.67120 -22.29209 -21.90334 -20.17264 -19.00487 -17.71840 -17.29491 -16.68033 -16.58792 -16.33952 -16.10078 -15.65309 -15.26515 -15.02684 -14.65788 -14.50351 -14.20131 -13.93545 -13.75089 -13.50753 -13.32592 -13.17871 -12.93974 -12.59052 -12.41230 -12.29978 -12.21584 -12.07274 -11.65876 -11.50611 -11.42694 -11.42525 -11.18928 -10.93272 -10.87264 -10.86737 -10.62503 -10.26373 -10.18107 -9.74380 -9.27721 -8.74188 -8.61514 -8.44530 -8.20317 -7.67547 -6.06742 -4.11750 1.53275 1.60503 2.14756 2.40994 3.27257 3.30995 3.35213 3.38583 3.56431 3.98322 4.11229 4.42850 4.56524 4.69528 4.82249 4.90587 4.96981 5.00088 5.12995 5.13835 5.24130 5.28044 5.30707 5.31970 5.36845 5.42837 5.51736 5.63887 5.65031 5.77986 5.78484 5.89280 6.01649 6.18450 6.22343 6.48686 6.56259 6.69235 6.78559 6.83979 6.97034 7.02359 7.17984 7.37797 7.48074 7.72508 7.88577 8.17459 8.35026 8.84556 9.00406 9.52863 11.01508 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.003766 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.575272 B = 7433.728014 C = 9110.867134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.479 6.479 5 C 0.093 3.907 6 H 0.120 0.880 7 C -0.186 4.186 8 N -0.504 5.504 9 C 0.011 3.989 10 C 0.037 3.963 11 C 0.516 3.484 12 O -0.504 6.504 13 N -0.565 5.565 14 C 0.249 3.751 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.164 3.836 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.109 4.109 28 C -0.124 4.124 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.265 0.735 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 -22.047 0.365 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.304 3.696 4 O -0.363 6.363 5 C -0.017 4.017 6 H 0.137 0.863 7 C -0.244 4.244 8 N -0.228 5.228 9 C -0.137 4.137 10 C -0.093 4.093 11 C 0.303 3.697 12 O -0.378 6.378 13 N -0.295 5.295 14 C 0.132 3.868 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.072 3.928 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.070 -20.771 -0.138 21.382 hybrid contribution 0.582 0.217 1.593 1.710 sum -4.489 -20.555 1.456 21.089 Atomic orbital electron populations 1.23234 0.76433 1.03448 1.02633 1.86478 1.23293 1.33610 1.84593 1.23545 0.91666 0.81375 0.72983 1.90688 1.66579 1.35992 1.43083 1.21255 0.87995 0.91215 1.01282 0.86263 1.22432 1.02502 1.01796 0.97709 1.61495 1.13980 1.09851 1.37464 1.22739 1.01783 1.01572 0.87567 1.22133 0.87985 0.96573 1.02636 1.20064 0.82377 0.89687 0.77615 1.90694 1.46301 1.53021 1.47786 1.45971 1.03541 1.08469 1.71480 1.19411 0.97011 0.72620 0.97767 1.21318 1.47742 0.95160 0.92431 0.92533 1.24901 0.95198 0.96710 0.97072 1.69913 1.47731 1.06914 1.28602 0.86561 0.78662 0.78005 0.84239 1.20229 1.21104 1.20127 1.17759 0.91670 0.90566 0.92803 1.21367 0.98678 0.97265 0.97235 1.20965 0.95976 0.97981 0.98025 1.21054 1.00277 1.00629 0.93313 1.20972 0.97350 0.96124 0.98329 1.21346 0.97061 0.98285 0.97695 0.88225 0.91998 0.91856 0.91376 0.90527 0.90670 0.88793 0.90255 0.95835 0.88264 0.91531 0.94777 0.93258 0.92575 0.86060 0.86207 0.86410 0.86095 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.86 10.47 -39.25 -0.41 -4.27 16 3 C 0.46 6.05 6.95 36.01 0.25 6.30 16 4 O -0.48 -7.92 14.08 -18.75 -0.26 -8.19 16 5 C 0.09 1.09 2.83 -68.87 -0.20 0.89 16 6 H 0.12 1.16 7.93 -51.93 -0.41 0.75 16 7 C -0.19 -1.70 8.37 37.16 0.31 -1.39 16 8 N -0.50 -7.85 4.15 -237.73 -0.99 -8.84 16 9 C 0.01 0.17 8.17 60.07 0.49 0.66 16 10 C 0.04 0.57 3.75 -4.98 -0.02 0.55 16 11 C 0.52 10.73 7.19 -10.98 -0.08 10.65 16 12 O -0.50 -12.67 14.17 5.55 0.08 -12.59 16 13 N -0.56 -12.00 2.50 -114.74 -0.29 -12.28 16 14 C 0.25 6.51 5.15 -5.19 -0.03 6.49 16 15 C -0.53 -14.87 9.39 -34.44 -0.32 -15.20 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 19 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.16 2.87 4.54 -83.69 -0.38 2.49 16 24 C -0.13 -1.91 8.27 -39.39 -0.33 -2.24 16 25 C -0.11 -1.37 10.04 -39.61 -0.40 -1.76 16 26 C -0.13 -1.55 10.04 -39.55 -0.40 -1.95 16 27 C -0.11 -1.37 10.04 -39.62 -0.40 -1.77 16 28 C -0.12 -1.92 9.73 -39.39 -0.38 -2.31 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.07 0.67 6.42 -51.93 -0.33 0.34 16 33 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 34 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 35 H 0.09 1.87 6.09 -51.93 -0.32 1.56 16 36 H 0.08 1.31 5.83 -51.93 -0.30 1.00 16 37 H 0.02 0.33 6.46 -51.93 -0.34 -0.01 16 38 H 0.10 1.32 7.93 -51.93 -0.41 0.90 16 39 H 0.07 0.91 5.23 -51.93 -0.27 0.64 16 40 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 41 H 0.05 1.44 7.36 -51.93 -0.38 1.06 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.12 1.85 7.61 -52.49 -0.40 1.45 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -34.82 386.52 -8.09 -42.91 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.86 Total: 1.88 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.90 Total: 4.50 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.54 Total: -46.92 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.60 Total: -25.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.82 -8.09 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361640363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.274 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds