Wall clock time and date at job start Tue Mar 31 2020 18:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 116.99723 * 2 1 4 4 O 1.20823 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99701 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47093 * 60.00366 * 5 3 2 7 7 C 1.52999 * 109.47332 * 299.99913 * 5 3 2 8 8 N 1.46897 * 109.47165 * 179.97438 * 5 3 2 9 9 C 1.46904 * 110.99879 * 66.04662 * 8 5 3 10 10 C 1.46899 * 111.00265 * 190.00206 * 8 5 3 11 11 C 1.50697 * 109.47171 * 170.00442 * 10 8 5 12 12 O 1.21284 * 120.00234 * 354.07794 * 11 10 8 13 13 N 1.34784 * 119.99899 * 174.08220 * 11 10 8 14 14 C 1.46496 * 120.00004 * 185.14560 * 13 11 10 15 15 C 1.50706 * 109.47101 * 89.99782 * 14 13 11 16 16 H 1.07998 * 120.00134 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99591 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00444 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99518 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47289 * 59.99789 * 19 17 15 21 21 H 1.48500 * 109.46932 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46908 * 299.99569 * 19 17 15 23 23 C 1.39921 * 119.99866 * 5.14201 * 13 11 10 24 24 C 1.38871 * 120.07560 * 290.93773 * 23 13 11 25 25 C 1.38112 * 119.92989 * 179.74923 * 24 23 13 26 26 C 1.38284 * 120.06907 * 0.52618 * 25 24 23 27 27 C 1.38271 * 120.14144 * 359.74721 * 26 25 24 28 28 C 1.38113 * 120.07515 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47228 * 299.99943 * 1 2 3 31 31 H 1.08997 * 109.47494 * 60.00008 * 1 2 3 32 32 H 1.08998 * 109.47402 * 300.00265 * 7 5 3 33 33 H 1.09005 * 109.46724 * 60.00140 * 7 5 3 34 34 H 1.08994 * 109.47210 * 179.97438 * 7 5 3 35 35 H 1.08999 * 109.47058 * 183.95323 * 9 8 5 36 36 H 1.09004 * 109.47318 * 303.95536 * 9 8 5 37 37 H 1.09004 * 109.46910 * 63.95173 * 9 8 5 38 38 H 1.08997 * 109.47095 * 49.99893 * 10 8 5 39 39 H 1.09006 * 109.46998 * 290.00178 * 10 8 5 40 40 H 1.08994 * 109.47511 * 209.99928 * 14 13 11 41 41 H 1.09002 * 109.47274 * 329.99982 * 14 13 11 42 42 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 43 43 H 1.07995 * 120.03125 * 0.02562 * 24 23 13 44 44 H 1.08006 * 119.96209 * 180.27202 * 25 24 23 45 45 H 1.08004 * 119.92451 * 179.72503 * 26 25 24 46 46 H 1.07999 * 119.96358 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.03753 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1129 0.5816 1.2502 8 7 3.9828 2.6835 -0.0002 9 6 3.5976 3.3471 1.2526 10 6 5.4273 2.8053 -0.2378 11 6 5.7770 4.2517 -0.4758 12 8 4.8975 5.0829 -0.5569 13 7 7.0673 4.6217 -0.5986 14 6 7.4145 6.0399 -0.7170 15 6 7.6419 6.6177 0.6562 16 1 7.5385 5.9911 1.5297 17 6 7.9819 7.9464 0.7973 18 7 8.1083 8.7094 -0.2663 19 14 8.2645 8.6624 2.4994 20 1 9.3755 7.9352 3.1642 21 1 8.6164 10.1001 2.3794 22 1 7.0267 8.5211 3.3075 23 6 8.0750 3.6511 -0.6130 24 6 8.3657 2.9325 0.5393 25 6 9.3575 1.9715 0.5203 26 6 10.0681 1.7321 -0.6415 27 6 9.7850 2.4498 -1.7890 28 6 8.7905 3.4082 -1.7782 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.7228 1.0758 2.1399 33 1 3.8038 -0.4637 1.2502 34 1 5.2013 0.6382 1.2503 35 1 3.8548 4.4048 1.1975 36 1 2.5233 3.2418 1.4042 37 1 4.1288 2.8868 2.0858 38 1 5.7025 2.2162 -1.1126 39 1 5.9710 2.4386 0.6329 40 1 8.3234 6.1433 -1.3097 41 1 6.5995 6.5741 -1.2055 42 1 8.3479 9.6441 -0.1670 43 1 7.8137 3.1219 1.4480 44 1 9.5810 1.4093 1.4150 45 1 10.8462 0.9832 -0.6525 46 1 10.3421 2.2608 -2.6947 47 1 8.5696 3.9681 -2.6749 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361640363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:15 Heat of formation + Delta-G solvation = -86.115632 kcal Electronic energy + Delta-G solvation = -29663.547404 eV Core-core repulsion = 25618.785327 eV Total energy + Delta-G solvation = -4044.762077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.88767 -41.31784 -39.63747 -38.55021 -37.23859 -36.42177 -34.79459 -32.42890 -31.77800 -30.88381 -29.90689 -28.59128 -28.45732 -26.85200 -25.16583 -24.08722 -23.37878 -23.21753 -21.19873 -20.39223 -18.83606 -18.67564 -18.47531 -17.67394 -17.55978 -17.21768 -17.03904 -16.73476 -16.28039 -16.10456 -15.81632 -15.47790 -14.99982 -14.96369 -14.61212 -14.40866 -14.34399 -14.26209 -14.21250 -13.57876 -13.47524 -13.36892 -13.17814 -13.04469 -12.93296 -12.79129 -12.66005 -12.58037 -12.42515 -12.36138 -12.08861 -12.07659 -11.75557 -11.73021 -11.32653 -10.84888 -10.67667 -10.02716 -9.79586 -9.44414 -9.15618 -8.25195 -6.40568 0.41222 0.54941 1.16098 1.33570 1.38314 1.44921 1.49705 1.72083 2.15282 2.37281 2.87123 2.93208 3.04613 3.55617 3.71440 3.92061 4.00325 4.06687 4.17350 4.18200 4.23365 4.32314 4.33395 4.36123 4.41631 4.46014 4.65109 4.68169 4.70761 4.74122 4.76788 4.79944 5.01485 5.03727 5.13025 5.16390 5.20340 5.35724 5.45050 5.58215 5.67634 5.69767 5.72325 5.80578 5.84985 6.00263 6.12405 6.65832 6.76100 6.77362 7.24076 7.41177 8.81934 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.003766 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.575272 B = 7433.728014 C = 9110.867134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.465 3.535 4 O -0.525 6.525 5 C 0.092 3.908 6 H 0.146 0.854 7 C -0.178 4.178 8 N -0.531 5.531 9 C 0.023 3.977 10 C 0.059 3.941 11 C 0.505 3.495 12 O -0.564 6.564 13 N -0.566 5.566 14 C 0.268 3.732 15 C -0.541 4.541 16 H 0.054 0.946 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.276 1.276 23 C 0.124 3.876 24 C -0.134 4.134 25 C -0.100 4.100 26 C -0.118 4.118 27 C -0.103 4.103 28 C -0.141 4.141 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.126 0.874 39 H 0.091 0.909 40 H 0.018 0.982 41 H 0.001 0.999 42 H 0.268 0.732 43 H 0.115 0.885 44 H 0.155 0.845 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -26.299 1.888 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.413 6.413 5 C -0.017 4.017 6 H 0.164 0.836 7 C -0.236 4.236 8 N -0.256 5.256 9 C -0.124 4.124 10 C -0.071 4.071 11 C 0.294 3.706 12 O -0.442 6.442 13 N -0.295 5.295 14 C 0.148 3.852 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.791 3.209 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.201 1.201 23 C 0.034 3.966 24 C -0.153 4.153 25 C -0.118 4.118 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.161 4.161 29 H 0.155 0.845 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.144 0.856 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.019 0.981 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.173 0.827 45 H 0.177 0.823 46 H 0.168 0.832 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.885 -25.110 1.384 25.313 hybrid contribution -0.078 1.421 1.029 1.756 sum -2.963 -23.688 2.413 23.995 Atomic orbital electron populations 1.23529 0.74935 1.05745 1.02195 1.86469 1.24715 1.32060 1.83879 1.23883 0.92265 0.81344 0.71688 1.90682 1.67610 1.37572 1.45391 1.21435 0.87288 0.89032 1.03952 0.83644 1.22401 1.03098 1.02585 0.95514 1.61300 1.14156 1.12801 1.37307 1.22478 1.01611 0.99242 0.89109 1.21965 0.88219 0.92283 1.04610 1.21158 0.81484 0.91863 0.76091 1.90660 1.47902 1.55204 1.50453 1.45775 1.05103 1.07343 1.71245 1.18770 0.94182 0.75873 0.96382 1.21588 1.47690 0.95726 0.92980 0.92741 1.25859 0.94737 0.97082 1.01363 1.70046 1.48449 1.07276 1.30979 0.85469 0.78857 0.77534 0.79003 1.18373 1.20260 1.20135 1.18023 0.92389 0.91377 0.94835 1.21385 0.99872 0.98097 0.95970 1.21347 0.94153 0.96626 0.99723 1.21550 0.99932 1.00054 0.92065 1.21311 0.95988 0.94646 1.00201 1.21391 0.98309 0.99672 0.96737 0.84493 0.92344 0.92532 0.92308 0.88170 0.89312 0.93393 0.90901 0.93451 0.85642 0.89160 0.96358 0.98117 0.92338 0.86667 0.82707 0.82324 0.83233 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -6.89 10.47 -51.38 -0.54 -7.43 16 3 C 0.47 11.78 6.95 71.24 0.50 12.28 16 4 O -0.52 -17.86 14.08 21.97 0.31 -17.55 16 5 C 0.09 1.99 2.83 44.17 0.13 2.11 16 6 H 0.15 2.37 7.93 -2.39 -0.02 2.36 16 7 C -0.18 -2.68 8.37 71.98 0.60 -2.08 16 8 N -0.53 -16.63 4.15 -906.03 -3.76 -20.39 16 9 C 0.02 0.79 8.17 127.69 1.04 1.84 16 10 C 0.06 1.79 3.75 85.56 0.32 2.11 16 11 C 0.50 22.27 7.19 87.65 0.63 22.90 16 12 O -0.56 -30.92 14.17 -3.04 -0.04 -30.97 16 13 N -0.57 -25.47 2.50 -635.30 -1.59 -27.06 16 14 C 0.27 15.11 5.15 85.64 0.44 15.55 16 15 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 16 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.51 5.46 84.65 0.46 0.98 16 18 N -0.93 -57.48 13.29 21.44 0.28 -57.20 16 19 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 23 C 0.12 4.37 4.54 38.15 0.17 4.54 16 24 C -0.13 -3.82 8.27 22.39 0.19 -3.63 16 25 C -0.10 -2.01 10.04 22.25 0.22 -1.79 16 26 C -0.12 -2.11 10.04 22.29 0.22 -1.89 16 27 C -0.10 -2.24 10.04 22.25 0.22 -2.02 16 28 C -0.14 -4.34 9.73 22.39 0.22 -4.12 16 29 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 32 H 0.06 1.02 6.42 -2.39 -0.02 1.00 16 33 H 0.10 1.08 8.11 -2.38 -0.02 1.06 16 34 H 0.09 1.13 6.91 -2.39 -0.02 1.11 16 35 H 0.05 2.07 6.09 -2.39 -0.01 2.06 16 36 H 0.07 2.54 5.83 -2.38 -0.01 2.52 16 37 H 0.05 1.33 6.46 -2.38 -0.02 1.31 16 38 H 0.13 3.12 7.93 -2.39 -0.02 3.10 16 39 H 0.09 2.30 5.23 -2.38 -0.01 2.29 16 40 H 0.02 1.07 7.89 -2.39 -0.02 1.05 16 41 H 0.00 0.05 7.36 -2.39 -0.02 0.03 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.12 3.37 7.61 -2.91 -0.02 3.34 16 44 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 47 H 0.11 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -84.22 386.52 4.47 -79.75 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.97 Total: 16.46 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.80 Total: 16.65 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -5.06 Total: -104.64 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.27 Total: -55.94 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -84.22 4.47 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361640363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.364 kcal (2) G-P(sol) polarization free energy of solvation -84.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds