Wall clock time and date at job start Tue Mar 31 2020 18:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46855 * 2 1 4 4 C 1.46503 * 120.00271 * 95.40384 * 3 2 1 5 5 C 1.50699 * 109.46984 * 276.17336 * 4 3 2 6 6 C 1.38251 * 119.93024 * 272.52394 * 5 4 3 7 7 C 1.38235 * 120.14593 * 179.75072 * 6 5 4 8 8 C 1.38542 * 120.02918 * 0.43199 * 7 6 5 9 9 C 1.39267 * 119.82705 * 359.56670 * 8 7 6 10 10 C 1.38238 * 119.92857 * 92.50541 * 5 4 3 11 11 O 1.36501 * 108.64467 * 180.25137 * 9 8 7 12 12 C 1.43991 * 105.48149 * 342.72264 * 11 9 8 13 13 O 1.36507 * 131.53776 * 179.88203 * 8 7 6 14 14 C 1.34778 * 119.99862 * 275.40354 * 3 2 1 15 15 O 1.21279 * 119.99852 * 5.27770 * 14 3 2 16 16 C 1.50702 * 119.99834 * 185.28003 * 14 3 2 17 17 H 1.08997 * 109.47347 * 326.85376 * 16 14 3 18 18 N 1.46906 * 109.46826 * 206.85409 * 16 14 3 19 19 C 1.52995 * 109.47050 * 86.85463 * 16 14 3 20 20 C 1.52999 * 109.47191 * 184.12630 * 19 16 14 21 21 C 1.50699 * 109.47416 * 180.02562 * 20 19 16 22 22 H 1.08004 * 119.99990 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99965 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99733 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47381 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46982 * 119.99555 * 25 23 21 28 28 H 1.48502 * 109.46939 * 239.99586 * 25 23 21 29 29 H 1.09003 * 109.47277 * 64.14843 * 1 2 3 30 30 H 1.09000 * 109.46796 * 184.14231 * 1 2 3 31 31 H 1.09002 * 109.47425 * 304.14290 * 1 2 3 32 32 H 1.08999 * 109.47267 * 239.99684 * 2 1 3 33 33 H 1.09005 * 109.47281 * 119.99592 * 2 1 3 34 34 H 1.08994 * 109.47406 * 156.17087 * 4 3 2 35 35 H 1.09005 * 109.46670 * 36.17206 * 4 3 2 36 36 H 1.08004 * 119.92537 * 359.97438 * 6 5 4 37 37 H 1.07998 * 119.98881 * 180.32756 * 7 6 5 38 38 H 1.07998 * 119.98470 * 0.02562 * 10 5 4 39 39 H 1.09007 * 110.56932 * 268.55021 * 12 11 9 40 40 H 1.09002 * 110.57014 * 145.68219 * 12 11 9 41 41 H 1.00901 * 110.99817 * 176.04643 * 18 16 14 42 42 H 1.00896 * 110.99845 * 299.99901 * 18 16 14 43 43 H 1.08997 * 109.47412 * 304.12808 * 19 16 14 44 44 H 1.09002 * 109.47090 * 64.12951 * 19 16 14 45 45 H 1.09005 * 109.47382 * 300.00275 * 20 19 16 46 46 H 1.09002 * 109.46841 * 60.00169 * 20 19 16 47 47 H 0.96992 * 120.00181 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3751 2.0321 1.2631 5 6 1.1342 2.5968 1.9052 6 6 0.7070 3.8705 1.5786 7 6 -0.4335 4.3909 2.1610 8 6 -1.1466 3.6398 3.0811 9 6 -0.7164 2.3568 3.4102 10 6 0.4252 1.8400 2.8194 11 8 -1.5813 1.8275 4.3240 12 6 -2.3117 2.9485 4.8562 13 8 -2.2811 3.9144 3.7889 14 6 2.1392 2.0532 -1.1620 15 8 1.7546 1.5500 -2.1963 16 6 2.7524 3.4298 -1.1761 17 1 2.5052 3.9471 -0.2491 18 7 2.2238 4.1896 -2.3169 19 6 4.2723 3.3098 -1.3035 20 6 4.9030 4.7009 -1.2145 21 6 6.4000 4.5828 -1.3406 22 1 6.8561 3.6125 -1.4708 23 6 7.1876 5.7134 -1.2887 24 7 6.6323 6.8948 -1.1296 25 14 9.0433 5.5668 -1.4443 26 1 9.4147 4.1390 -1.6131 27 1 9.5037 6.3414 -2.6247 28 1 9.6868 6.1036 -0.2183 29 1 -0.3634 0.4481 -0.9248 30 1 -0.3633 -1.0250 0.0742 31 1 -0.3634 0.5768 0.8505 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.0828 2.8380 1.0693 35 1 2.8303 1.3018 1.9322 36 1 1.2637 4.4587 0.8640 37 1 -0.7678 5.3841 1.9000 38 1 0.7613 0.8454 3.0728 39 1 -1.8158 3.3423 5.7435 40 1 -3.3384 2.6629 5.0851 41 1 2.5702 5.1373 -2.3119 42 1 2.4401 3.7301 -3.1887 43 1 4.6563 2.6845 -0.4975 44 1 4.5219 2.8585 -2.2638 45 1 4.5190 5.3262 -2.0205 46 1 4.6534 5.1521 -0.2541 47 1 7.1863 7.6902 -1.0935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:04 Heat of formation + Delta-G solvation = -75.331170 kcal Electronic energy + Delta-G solvation = -29461.194665 eV Core-core repulsion = 25416.900237 eV Total energy + Delta-G solvation = -4044.294428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.37319 -40.19107 -38.24929 -36.50872 -35.92261 -35.38048 -32.91495 -31.86103 -30.91725 -30.06290 -29.87765 -26.81811 -26.51712 -25.45145 -24.33658 -23.15122 -22.49260 -22.22940 -20.38473 -18.98876 -18.14792 -17.77727 -17.68322 -17.34777 -16.50529 -16.30056 -15.93372 -15.17421 -14.83790 -14.68384 -14.48518 -14.31734 -14.15712 -14.08908 -13.77460 -13.47951 -13.35244 -13.20766 -13.19211 -12.99083 -12.60090 -12.30490 -12.18498 -12.10666 -11.94815 -11.63639 -11.31207 -11.13960 -11.07937 -10.93507 -10.77874 -10.66917 -10.00828 -9.88574 -9.27517 -9.19753 -9.02073 -8.71999 -8.46182 -8.23815 -8.20258 -6.10543 -4.13389 0.88580 1.04069 2.51420 2.86568 3.02082 3.19269 3.25053 3.33424 3.37162 3.51391 4.27078 4.37975 4.38062 4.52992 4.62095 4.69629 4.77297 4.96511 4.98326 5.11709 5.13211 5.18100 5.26019 5.29620 5.33400 5.44174 5.51822 5.56414 5.67460 5.73783 5.82660 5.86861 5.96150 6.03827 6.19468 6.24393 6.27164 6.30797 6.50007 6.61815 6.84318 6.91023 7.35115 7.48987 7.56065 7.61488 7.86511 7.88459 8.29181 8.41619 8.92654 9.51783 11.00315 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002997 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.754781 B = 9340.251458 C =10370.898180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.612 5.612 4 C 0.146 3.854 5 C -0.094 4.094 6 C -0.088 4.088 7 C -0.095 4.095 8 C 0.032 3.968 9 C 0.025 3.975 10 C -0.084 4.084 11 O -0.311 6.311 12 C 0.213 3.787 13 O -0.310 6.310 14 C 0.530 3.470 15 O -0.533 6.533 16 C 0.069 3.931 17 H 0.096 0.904 18 N -0.831 5.831 19 C -0.139 4.139 20 C 0.025 3.975 21 C -0.523 4.523 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.891 3.109 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.354 0.646 42 H 0.346 0.654 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 -9.540 11.924 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 N -0.345 5.345 4 C 0.023 3.977 5 C -0.096 4.096 6 C -0.107 4.107 7 C -0.114 4.114 8 C -0.013 4.013 9 C -0.019 4.019 10 C -0.103 4.103 11 O -0.227 6.227 12 C 0.101 3.899 13 O -0.226 6.226 14 C 0.319 3.681 15 O -0.408 6.408 16 C -0.046 4.046 17 H 0.113 0.887 18 N -0.364 5.364 19 C -0.178 4.178 20 C -0.012 4.012 21 C -0.561 4.561 22 H 0.073 0.927 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.719 3.281 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.101 0.899 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.160 0.840 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.589 -9.836 11.729 22.572 hybrid contribution 1.783 0.151 0.061 1.791 sum -14.806 -9.684 11.790 21.260 Atomic orbital electron populations 1.22192 0.96097 1.01656 1.02921 1.21366 0.94459 0.82282 1.02555 1.47988 1.66670 1.13867 1.06016 1.20589 0.92966 0.98983 0.85188 1.20013 0.98339 0.94367 0.96840 1.21066 0.95581 0.95202 0.98846 1.20112 0.94388 1.00167 0.96745 1.19839 0.88041 0.94477 0.98928 1.19712 0.93861 0.92120 0.96166 1.19868 0.91621 1.00844 0.97969 1.87352 1.49492 1.31519 1.54341 1.25599 0.98918 0.75808 0.89526 1.87365 1.39117 1.54591 1.41568 1.20879 0.77001 0.87618 0.82600 1.90627 1.48500 1.69443 1.32215 1.21657 0.94899 0.91072 0.96996 0.88659 1.58796 1.65754 1.06651 1.05156 1.22392 0.91352 1.02471 1.01606 1.19103 0.95409 0.89393 0.97317 1.21207 0.91709 0.93082 1.50107 0.92666 1.25002 0.98753 0.95388 0.95126 1.69946 1.35377 0.97862 1.49942 0.86547 0.85628 0.78189 0.77718 1.19757 1.20966 1.20950 0.92024 0.92217 0.92283 0.90383 0.90759 0.87548 0.89125 0.83802 0.84436 0.84825 0.89944 0.85341 0.83058 0.84021 0.92494 0.92511 0.96366 0.96340 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.20 37.16 0.38 -1.56 16 2 C 0.12 1.31 6.07 -4.04 -0.02 1.28 16 3 N -0.61 -7.90 2.47 -175.06 -0.43 -8.33 16 4 C 0.15 1.57 5.39 -5.19 -0.03 1.55 16 5 C -0.09 -1.03 5.11 -104.62 -0.53 -1.56 16 6 C -0.09 -1.03 9.55 -39.58 -0.38 -1.41 16 7 C -0.10 -1.10 10.06 -39.47 -0.40 -1.49 16 8 C 0.03 0.38 7.15 -39.09 -0.28 0.10 16 9 C 0.03 0.30 7.15 -39.08 -0.28 0.02 16 10 C -0.08 -0.88 8.00 -39.47 -0.32 -1.19 16 11 O -0.31 -3.37 11.40 -45.69 -0.52 -3.89 16 12 C 0.21 1.70 8.89 101.05 0.90 2.60 16 13 O -0.31 -3.50 11.40 -45.71 -0.52 -4.02 16 14 C 0.53 8.64 6.82 -10.98 -0.07 8.56 16 15 O -0.53 -10.30 15.98 5.56 0.09 -10.21 16 16 C 0.07 1.12 2.38 -68.86 -0.16 0.95 16 17 H 0.10 1.42 3.95 -51.93 -0.21 1.21 16 18 N -0.83 -13.80 8.99 -5.65 -0.05 -13.85 16 19 C -0.14 -2.62 4.59 -26.73 -0.12 -2.75 16 20 C 0.02 0.58 4.72 -27.88 -0.13 0.45 16 21 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 22 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 24 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 25 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.68 5.92 -51.93 -0.31 0.37 16 32 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 33 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 34 H 0.11 1.23 5.34 -51.93 -0.28 0.96 16 35 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 36 H 0.14 1.68 5.79 -52.48 -0.30 1.37 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.35 5.84 7.52 -39.29 -0.30 5.55 16 42 H 0.35 5.93 8.55 -39.29 -0.34 5.60 16 43 H 0.06 1.03 7.67 -51.93 -0.40 0.63 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.02 0.44 6.85 -51.93 -0.36 0.09 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -32.42 381.04 -8.46 -40.88 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.62 Total: 9.64 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.86 Total: -7.20 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.25 Total: -46.84 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.95 Total: -18.12 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.42 -8.46 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.447 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds