Wall clock time and date at job start Tue Mar 31 2020 18:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46855 * 2 1 4 4 C 1.46503 * 120.00271 * 95.40384 * 3 2 1 5 5 C 1.50699 * 109.46984 * 276.17336 * 4 3 2 6 6 C 1.38251 * 119.93024 * 272.52394 * 5 4 3 7 7 C 1.38235 * 120.14593 * 179.75072 * 6 5 4 8 8 C 1.38542 * 120.02918 * 0.43199 * 7 6 5 9 9 C 1.39267 * 119.82705 * 359.56670 * 8 7 6 10 10 C 1.38238 * 119.92857 * 92.50541 * 5 4 3 11 11 O 1.36501 * 108.64467 * 180.25137 * 9 8 7 12 12 C 1.43991 * 105.48149 * 342.72264 * 11 9 8 13 13 O 1.36507 * 131.53776 * 179.88203 * 8 7 6 14 14 C 1.34778 * 119.99862 * 275.40354 * 3 2 1 15 15 O 1.21279 * 119.99852 * 5.27770 * 14 3 2 16 16 C 1.50702 * 119.99834 * 185.28003 * 14 3 2 17 17 H 1.08997 * 109.47347 * 326.85376 * 16 14 3 18 18 N 1.46906 * 109.46826 * 206.85409 * 16 14 3 19 19 C 1.52995 * 109.47050 * 86.85463 * 16 14 3 20 20 C 1.52999 * 109.47191 * 184.12630 * 19 16 14 21 21 C 1.50699 * 109.47416 * 180.02562 * 20 19 16 22 22 H 1.08004 * 119.99990 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99965 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99733 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47381 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46982 * 119.99555 * 25 23 21 28 28 H 1.48502 * 109.46939 * 239.99586 * 25 23 21 29 29 H 1.09003 * 109.47277 * 64.14843 * 1 2 3 30 30 H 1.09000 * 109.46796 * 184.14231 * 1 2 3 31 31 H 1.09002 * 109.47425 * 304.14290 * 1 2 3 32 32 H 1.08999 * 109.47267 * 239.99684 * 2 1 3 33 33 H 1.09005 * 109.47281 * 119.99592 * 2 1 3 34 34 H 1.08994 * 109.47406 * 156.17087 * 4 3 2 35 35 H 1.09005 * 109.46670 * 36.17206 * 4 3 2 36 36 H 1.08004 * 119.92537 * 359.97438 * 6 5 4 37 37 H 1.07998 * 119.98881 * 180.32756 * 7 6 5 38 38 H 1.07998 * 119.98470 * 0.02562 * 10 5 4 39 39 H 1.09007 * 110.56932 * 268.55021 * 12 11 9 40 40 H 1.09002 * 110.57014 * 145.68219 * 12 11 9 41 41 H 1.00901 * 110.99817 * 176.04643 * 18 16 14 42 42 H 1.00896 * 110.99845 * 299.99901 * 18 16 14 43 43 H 1.08997 * 109.47412 * 304.12808 * 19 16 14 44 44 H 1.09002 * 109.47090 * 64.12951 * 19 16 14 45 45 H 1.09005 * 109.47382 * 300.00275 * 20 19 16 46 46 H 1.09002 * 109.46841 * 60.00169 * 20 19 16 47 47 H 0.96992 * 120.00181 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3751 2.0321 1.2631 5 6 1.1342 2.5968 1.9052 6 6 0.7070 3.8705 1.5786 7 6 -0.4335 4.3909 2.1610 8 6 -1.1466 3.6398 3.0811 9 6 -0.7164 2.3568 3.4102 10 6 0.4252 1.8400 2.8194 11 8 -1.5813 1.8275 4.3240 12 6 -2.3117 2.9485 4.8562 13 8 -2.2811 3.9144 3.7889 14 6 2.1392 2.0532 -1.1620 15 8 1.7546 1.5500 -2.1963 16 6 2.7524 3.4298 -1.1761 17 1 2.5052 3.9471 -0.2491 18 7 2.2238 4.1896 -2.3169 19 6 4.2723 3.3098 -1.3035 20 6 4.9030 4.7009 -1.2145 21 6 6.4000 4.5828 -1.3406 22 1 6.8561 3.6125 -1.4708 23 6 7.1876 5.7134 -1.2887 24 7 6.6323 6.8948 -1.1296 25 14 9.0433 5.5668 -1.4443 26 1 9.4147 4.1390 -1.6131 27 1 9.5037 6.3414 -2.6247 28 1 9.6868 6.1036 -0.2183 29 1 -0.3634 0.4481 -0.9248 30 1 -0.3633 -1.0250 0.0742 31 1 -0.3634 0.5768 0.8505 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.0828 2.8380 1.0693 35 1 2.8303 1.3018 1.9322 36 1 1.2637 4.4587 0.8640 37 1 -0.7678 5.3841 1.9000 38 1 0.7613 0.8454 3.0728 39 1 -1.8158 3.3423 5.7435 40 1 -3.3384 2.6629 5.0851 41 1 2.5702 5.1373 -2.3119 42 1 2.4401 3.7301 -3.1887 43 1 4.6563 2.6845 -0.4975 44 1 4.5219 2.8585 -2.2638 45 1 4.5190 5.3262 -2.0205 46 1 4.6534 5.1521 -0.2541 47 1 7.1863 7.6902 -1.0935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:03 Heat of formation + Delta-G solvation = -96.622822 kcal Electronic energy + Delta-G solvation = -29462.117940 eV Core-core repulsion = 25416.900237 eV Total energy + Delta-G solvation = -4045.217703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.14850 -41.35765 -39.19083 -37.31852 -37.24045 -36.64027 -34.84071 -32.78403 -31.80281 -31.66171 -30.92214 -28.22358 -27.45005 -26.35657 -25.83380 -24.00995 -23.76530 -23.10054 -21.97171 -20.15329 -18.99193 -18.85066 -18.60650 -18.35879 -18.10075 -17.31133 -17.02139 -16.51449 -16.17359 -15.96609 -15.60970 -15.45324 -15.32240 -14.91621 -14.87255 -14.66883 -14.52549 -14.41112 -14.11674 -13.99369 -13.82365 -13.74218 -13.39934 -13.14538 -13.00490 -12.89474 -12.83877 -12.59045 -12.46099 -12.11870 -11.97072 -11.75914 -11.67353 -11.62409 -11.24459 -10.63406 -10.53173 -9.87871 -9.77963 -9.61307 -9.07254 -8.18631 -6.28066 0.01756 0.19895 1.40278 1.42565 1.53543 1.60403 1.76245 1.98516 2.42243 2.50785 2.60859 3.15415 3.45759 3.55255 3.71090 3.78890 3.80755 3.91184 3.97706 4.09327 4.19879 4.20887 4.24047 4.33111 4.35089 4.40068 4.52842 4.60919 4.67616 4.72729 4.80839 4.86816 4.99967 5.03167 5.05150 5.11397 5.19158 5.30796 5.36790 5.44493 5.50811 5.64282 5.69516 5.84054 6.07562 6.10689 6.24682 6.36077 6.49208 6.87292 7.18392 7.40860 8.92088 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.002997 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.754781 B = 9340.251458 C =10370.898180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.111 3.889 3 N -0.602 5.602 4 C 0.142 3.858 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.106 4.106 8 C 0.018 3.982 9 C 0.017 3.983 10 C -0.078 4.078 11 O -0.321 6.321 12 C 0.204 3.796 13 O -0.327 6.327 14 C 0.528 3.472 15 O -0.569 6.569 16 C 0.075 3.925 17 H 0.110 0.890 18 N -0.831 5.831 19 C -0.121 4.121 20 C 0.032 3.968 21 C -0.541 4.541 22 H 0.054 0.946 23 C 0.007 3.993 24 N -0.925 5.925 25 Si 0.955 3.045 26 H -0.266 1.266 27 H -0.282 1.282 28 H -0.277 1.277 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.159 0.841 39 H 0.104 0.896 40 H 0.160 0.840 41 H 0.353 0.647 42 H 0.343 0.657 43 H 0.067 0.933 44 H 0.042 0.958 45 H 0.002 0.998 46 H 0.006 0.994 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.267 -11.193 13.737 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.334 5.334 4 C 0.020 3.980 5 C -0.096 4.096 6 C -0.119 4.119 7 C -0.125 4.125 8 C -0.026 4.026 9 C -0.027 4.027 10 C -0.097 4.097 11 O -0.237 6.237 12 C 0.094 3.906 13 O -0.244 6.244 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.040 4.040 17 H 0.128 0.872 18 N -0.362 5.362 19 C -0.161 4.161 20 C -0.005 4.005 21 C -0.579 4.579 22 H 0.072 0.928 23 C -0.191 4.191 24 N -0.565 5.565 25 Si 0.781 3.219 26 H -0.190 1.190 27 H -0.208 1.208 28 H -0.203 1.203 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.176 0.824 39 H 0.121 0.879 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.020 0.980 46 H 0.024 0.976 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.372 -11.505 13.585 24.186 hybrid contribution 1.629 0.671 -0.424 1.812 sum -14.743 -10.834 13.161 22.537 Atomic orbital electron populations 1.22113 0.96101 1.02723 1.01112 1.21588 0.94396 0.81222 1.03845 1.48017 1.65325 1.14387 1.05718 1.20791 0.92863 0.99698 0.84648 1.19994 0.98417 0.94096 0.97069 1.21109 0.95828 0.95838 0.99093 1.20235 0.94589 1.00688 0.96996 1.20019 0.88430 0.94982 0.99206 1.19919 0.94313 0.92040 0.96453 1.20075 0.90964 1.01621 0.97060 1.87325 1.49521 1.32636 1.54259 1.26110 1.00761 0.74742 0.89008 1.87334 1.38895 1.55692 1.42451 1.20766 0.76982 0.87370 0.83191 1.90611 1.50319 1.70071 1.33734 1.21594 0.93038 0.91865 0.97464 0.87202 1.58808 1.65598 1.06611 1.05210 1.22135 0.93088 0.99728 1.01176 1.18953 0.94199 0.91499 0.95859 1.21631 0.93549 0.93059 1.49710 0.92804 1.25812 1.03300 0.95131 0.94902 1.70052 1.37006 0.98515 1.50910 0.85542 0.80246 0.78381 0.77743 1.19032 1.20799 1.20282 0.95246 0.89988 0.92291 0.91724 0.86782 0.88449 0.85576 0.84468 0.83845 0.82373 0.87874 0.82282 0.83209 0.84398 0.91403 0.93940 0.98005 0.97555 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 10.20 71.98 0.73 -2.66 16 2 C 0.11 2.24 6.07 86.38 0.52 2.77 16 3 N -0.60 -14.54 2.47 -826.14 -2.04 -16.58 16 4 C 0.14 2.73 5.39 85.63 0.46 3.19 16 5 C -0.09 -1.90 5.11 -19.86 -0.10 -2.00 16 6 C -0.10 -2.29 9.55 22.27 0.21 -2.07 16 7 C -0.11 -2.44 10.06 22.34 0.22 -2.21 16 8 C 0.02 0.42 7.15 22.59 0.16 0.58 16 9 C 0.02 0.37 7.15 22.59 0.16 0.53 16 10 C -0.08 -1.44 8.00 22.34 0.18 -1.26 16 11 O -0.32 -6.29 11.40 -76.06 -0.87 -7.15 16 12 C 0.20 2.85 8.89 113.37 1.01 3.86 16 13 O -0.33 -7.05 11.40 -76.14 -0.87 -7.92 16 14 C 0.53 17.03 6.82 87.66 0.60 17.62 16 15 O -0.57 -22.21 15.98 -3.02 -0.05 -22.26 16 16 C 0.08 2.46 2.38 44.17 0.11 2.56 16 17 H 0.11 3.27 3.95 -2.39 -0.01 3.26 16 18 N -0.83 -28.23 8.99 -171.80 -1.54 -29.77 16 19 C -0.12 -4.61 4.59 30.59 0.14 -4.47 16 20 C 0.03 1.52 4.72 29.85 0.14 1.66 16 21 C -0.54 -29.01 9.11 25.60 0.23 -28.78 16 22 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 23 C 0.01 0.39 5.46 84.66 0.46 0.85 16 24 N -0.92 -53.09 13.29 21.45 0.28 -52.81 16 25 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 28 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.23 5.92 -2.39 -0.01 1.22 16 32 H 0.06 1.52 7.67 -2.39 -0.02 1.50 16 33 H 0.11 1.43 7.90 -2.38 -0.02 1.41 16 34 H 0.10 2.09 5.34 -2.39 -0.01 2.08 16 35 H 0.13 1.58 7.88 -2.38 -0.02 1.56 16 36 H 0.14 3.24 5.79 -2.91 -0.02 3.22 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.16 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.35 12.03 7.52 -89.69 -0.67 11.36 16 42 H 0.34 12.10 8.55 -89.70 -0.77 11.33 16 43 H 0.07 2.40 7.67 -2.39 -0.02 2.38 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.00 0.08 6.85 -2.38 -0.02 0.07 16 46 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -70.38 381.04 1.77 -68.62 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.42 Total: 32.98 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.24 Total: -9.83 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -3.30 Total: -99.16 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.78 Total: -37.33 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -70.38 1.77 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.006 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds