Wall clock time and date at job start Tue Mar 31 2020 18:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47530 * 2 1 4 4 C 1.46502 * 120.00407 * 89.99334 * 3 2 1 5 5 C 1.50699 * 109.47090 * 270.00695 * 4 3 2 6 6 C 1.38247 * 119.92634 * 270.01579 * 5 4 3 7 7 C 1.38240 * 120.14459 * 179.75199 * 6 5 4 8 8 C 1.38552 * 120.02633 * 0.42901 * 7 6 5 9 9 C 1.39265 * 119.82706 * 359.57585 * 8 7 6 10 10 C 1.38231 * 119.92969 * 89.99991 * 5 4 3 11 11 O 1.36496 * 108.64230 * 180.24572 * 9 8 7 12 12 C 1.43981 * 105.48444 * 342.72036 * 11 9 8 13 13 O 1.36505 * 131.53353 * 179.87931 * 8 7 6 14 14 C 1.34783 * 119.99920 * 270.00157 * 3 2 1 15 15 O 1.21285 * 119.99866 * 179.97438 * 14 3 2 16 16 C 1.50704 * 119.99939 * 359.97438 * 14 3 2 17 17 H 1.09000 * 109.47160 * 40.00202 * 16 14 3 18 18 N 1.46893 * 109.47230 * 160.00322 * 16 14 3 19 19 C 1.52997 * 109.47044 * 280.00413 * 16 14 3 20 20 C 1.52998 * 109.47304 * 175.00306 * 19 16 14 21 21 C 1.50700 * 109.47268 * 180.02562 * 20 19 16 22 22 H 1.07997 * 119.99946 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00027 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47149 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47140 * 120.00224 * 25 23 21 28 28 H 1.48503 * 109.46825 * 239.99773 * 25 23 21 29 29 H 1.08997 * 109.47432 * 300.00705 * 1 2 3 30 30 H 1.09008 * 109.46796 * 60.00361 * 1 2 3 31 31 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47505 * 239.99847 * 2 1 3 33 33 H 1.09000 * 109.47004 * 119.99336 * 2 1 3 34 34 H 1.08993 * 109.47016 * 150.00532 * 4 3 2 35 35 H 1.08998 * 109.46335 * 30.00535 * 4 3 2 36 36 H 1.07994 * 119.93290 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.99327 * 180.33354 * 7 6 5 38 38 H 1.08003 * 119.98943 * 0.02562 * 10 5 4 39 39 H 1.09007 * 110.56955 * 268.54960 * 12 11 9 40 40 H 1.09003 * 110.57719 * 145.67764 * 12 11 9 41 41 H 1.00906 * 111.00049 * 296.05006 * 18 16 14 42 42 H 1.00900 * 111.00411 * 59.99541 * 18 16 14 43 43 H 1.09002 * 109.47277 * 294.99996 * 19 16 14 44 44 H 1.08998 * 109.47203 * 54.99419 * 19 16 14 45 45 H 1.09008 * 109.46649 * 299.99628 * 20 19 16 46 46 H 1.08993 * 109.47279 * 59.99580 * 20 19 16 47 47 H 0.97000 * 120.00178 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0066 2.7823 1.7036 6 6 0.7776 4.0856 1.3033 7 6 -0.3754 4.7398 1.6954 8 6 -1.3005 4.0929 2.4987 9 6 -1.0697 2.7801 2.9020 10 6 0.0861 2.1293 2.5017 11 8 -2.1184 2.3699 3.6735 12 6 -2.7950 3.5757 4.0750 13 8 -2.4939 4.5053 3.0175 14 6 2.2430 2.0165 -1.1673 15 8 2.6470 3.1601 -1.1673 16 6 1.9923 1.3059 -2.4724 17 1 1.0819 0.7118 -2.3935 18 7 1.8398 2.2954 -3.5473 19 6 3.1746 0.3877 -2.7884 20 6 2.8664 -0.4259 -4.0469 21 6 4.0307 -1.3308 -4.3579 22 1 4.9034 -1.3257 -3.7218 23 6 3.9817 -2.1651 -5.4544 24 7 2.9187 -2.1717 -6.2288 25 14 5.4252 -3.2862 -5.8403 26 1 6.4900 -3.0896 -4.8241 27 1 4.9734 -4.7006 -5.8174 28 1 5.9599 -2.9591 -7.1865 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.0644 2.7985 1.1383 35 1 2.5505 1.3452 2.0283 36 1 1.4988 4.5922 0.6792 37 1 -0.5544 5.7560 1.3767 38 1 0.2676 1.1112 2.8132 39 1 -2.4024 3.9367 5.0257 40 1 -3.8699 3.4076 4.1425 41 1 1.0266 2.8730 -3.3944 42 1 2.6713 2.8593 -3.6404 43 1 4.0679 0.9898 -2.9549 44 1 3.3435 -0.2887 -1.9506 45 1 1.9731 -1.0281 -3.8804 46 1 2.6976 0.2506 -4.8847 47 1 2.8840 -2.7589 -7.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424071288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:07 Heat of formation + Delta-G solvation = -75.404135 kcal Electronic energy + Delta-G solvation = -29191.284278 eV Core-core repulsion = 25146.986686 eV Total energy + Delta-G solvation = -4044.297592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.45730 -40.28158 -38.33076 -36.59423 -35.94498 -35.30402 -32.82873 -31.88540 -30.92365 -30.12723 -29.92525 -27.38957 -26.21339 -25.38242 -23.87239 -23.25037 -22.92730 -22.05201 -20.23302 -19.02241 -18.22513 -17.89767 -17.72575 -17.13164 -16.57466 -16.38943 -15.94212 -15.47472 -15.13739 -14.81377 -14.51194 -14.33364 -14.24295 -14.06576 -13.83271 -13.64370 -13.33576 -13.27799 -13.16229 -12.89403 -12.40155 -12.37938 -12.14879 -12.05572 -11.73557 -11.52672 -11.32559 -11.24662 -10.99186 -10.85385 -10.63633 -10.50727 -10.06705 -9.77361 -9.36785 -9.12285 -8.99003 -8.77397 -8.41168 -8.29493 -8.14672 -5.94099 -3.96266 0.80098 0.94242 2.43146 2.74158 2.95547 3.11318 3.33529 3.41355 3.44832 3.46751 4.17812 4.29357 4.47177 4.49132 4.54599 4.65858 4.81408 4.87617 4.94425 4.99263 4.99739 5.14774 5.22104 5.30349 5.41474 5.42549 5.49235 5.57393 5.71225 5.73754 5.78772 5.82933 5.85838 5.94464 6.14969 6.19739 6.25369 6.39106 6.52975 6.66331 6.82488 7.07882 7.32534 7.52204 7.76135 7.81133 7.95828 8.13067 8.26769 8.48036 9.12067 9.67061 11.16770 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002412 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.321904 B =11608.212484 C =11938.429826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.607 5.607 4 C 0.155 3.845 5 C -0.092 4.092 6 C -0.084 4.084 7 C -0.102 4.102 8 C 0.031 3.969 9 C 0.025 3.975 10 C -0.085 4.085 11 O -0.309 6.309 12 C 0.213 3.787 13 O -0.311 6.311 14 C 0.489 3.511 15 O -0.551 6.551 16 C 0.076 3.924 17 H 0.099 0.901 18 N -0.807 5.807 19 C -0.097 4.097 20 C 0.031 3.969 21 C -0.521 4.521 22 H 0.052 0.948 23 C 0.058 3.942 24 N -0.892 5.892 25 Si 0.888 3.112 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.333 0.667 42 H 0.347 0.653 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.013 0.987 46 H 0.035 0.965 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 10.825 22.459 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.028 4.028 3 N -0.340 5.340 4 C 0.032 3.968 5 C -0.093 4.093 6 C -0.103 4.103 7 C -0.121 4.121 8 C -0.014 4.014 9 C -0.019 4.019 10 C -0.104 4.104 11 O -0.226 6.226 12 C 0.102 3.898 13 O -0.227 6.227 14 C 0.276 3.724 15 O -0.429 6.429 16 C -0.039 4.039 17 H 0.116 0.884 18 N -0.335 5.335 19 C -0.135 4.135 20 C -0.006 4.006 21 C -0.560 4.560 22 H 0.071 0.929 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.716 3.284 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.100 0.900 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.536 10.668 21.799 26.076 hybrid contribution 0.440 0.023 0.810 0.922 sum -9.097 10.691 22.609 26.613 Atomic orbital electron populations 1.22337 0.95890 1.02589 1.02683 1.21839 0.94584 0.81819 1.04528 1.48169 1.66294 1.14344 1.05147 1.20293 0.93665 0.96843 0.86000 1.20024 0.97379 0.94517 0.97395 1.21029 0.96567 0.94220 0.98471 1.20119 0.92012 1.00710 0.99225 1.19845 0.87246 0.93244 1.01036 1.19717 0.90759 0.92874 0.98518 1.19911 0.90039 1.00511 0.99955 1.87363 1.38726 1.30515 1.65972 1.25606 0.99675 0.74192 0.90369 1.87364 1.34244 1.51960 1.49121 1.22764 0.75579 0.87068 0.86953 1.90606 1.46273 1.18403 1.87606 1.21898 1.02679 0.94690 0.84645 0.88358 1.59005 1.08809 1.21882 1.43766 1.21706 0.94014 0.96357 1.01423 1.19016 0.96211 0.93904 0.91434 1.21307 1.02518 1.21655 1.10471 0.92944 1.24993 0.95770 0.97273 0.96309 1.69986 1.28123 1.38853 1.16178 0.86607 0.82935 0.80621 0.78229 1.19864 1.21117 1.21078 0.92173 0.92310 0.91253 0.88324 0.90312 0.88643 0.89539 0.83811 0.84744 0.84724 0.89988 0.85235 0.85523 0.83886 0.92817 0.92650 0.96900 0.94680 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 10.10 37.16 0.38 -1.48 16 2 C 0.09 1.03 5.73 -4.04 -0.02 1.01 16 3 N -0.61 -7.39 2.46 -175.06 -0.43 -7.82 16 4 C 0.15 1.59 5.57 -5.19 -0.03 1.56 16 5 C -0.09 -0.95 5.39 -104.62 -0.56 -1.52 16 6 C -0.08 -0.92 9.69 -39.58 -0.38 -1.30 16 7 C -0.10 -1.08 10.06 -39.46 -0.40 -1.48 16 8 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 9 C 0.03 0.28 7.15 -39.08 -0.28 0.00 16 10 C -0.09 -0.85 7.54 -39.47 -0.30 -1.15 16 11 O -0.31 -3.24 11.40 -45.68 -0.52 -3.76 16 12 C 0.21 1.59 8.89 101.05 0.90 2.49 16 13 O -0.31 -3.31 11.40 -45.70 -0.52 -3.83 16 14 C 0.49 7.39 6.91 -10.98 -0.08 7.32 16 15 O -0.55 -9.33 15.34 5.55 0.09 -9.24 16 16 C 0.08 1.27 2.31 -68.87 -0.16 1.11 16 17 H 0.10 1.59 6.12 -51.93 -0.32 1.27 16 18 N -0.81 -13.53 8.44 -5.66 -0.05 -13.58 16 19 C -0.10 -1.91 4.45 -26.73 -0.12 -2.02 16 20 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 21 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 22 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 25 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.06 0.61 5.26 -51.93 -0.27 0.34 16 30 H 0.06 0.70 7.16 -51.92 -0.37 0.32 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.25 4.83 -51.93 -0.25 1.00 16 33 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 34 H 0.10 1.06 7.36 -51.93 -0.38 0.68 16 35 H 0.09 0.68 7.84 -51.93 -0.41 0.27 16 36 H 0.14 1.62 7.56 -52.49 -0.40 1.23 16 37 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.13 7.73 -52.48 -0.41 0.73 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.33 4.93 9.06 -39.29 -0.36 4.57 16 42 H 0.35 5.85 8.58 -39.29 -0.34 5.52 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.05 1.02 6.43 -51.93 -0.33 0.68 16 45 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 46 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.17 381.96 -8.57 -41.74 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.72 Total: 8.19 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.88 Total: -8.00 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.26 Total: -47.36 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.96 Total: -16.84 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.17 -8.57 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.667 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds