Wall clock time and date at job start Tue Mar 31 2020 18:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47530 * 2 1 4 4 C 1.46502 * 120.00407 * 89.99334 * 3 2 1 5 5 C 1.50699 * 109.47090 * 270.00695 * 4 3 2 6 6 C 1.38247 * 119.92634 * 270.01579 * 5 4 3 7 7 C 1.38240 * 120.14459 * 179.75199 * 6 5 4 8 8 C 1.38552 * 120.02633 * 0.42901 * 7 6 5 9 9 C 1.39265 * 119.82706 * 359.57585 * 8 7 6 10 10 C 1.38231 * 119.92969 * 89.99991 * 5 4 3 11 11 O 1.36496 * 108.64230 * 180.24572 * 9 8 7 12 12 C 1.43981 * 105.48444 * 342.72036 * 11 9 8 13 13 O 1.36505 * 131.53353 * 179.87931 * 8 7 6 14 14 C 1.34783 * 119.99920 * 270.00157 * 3 2 1 15 15 O 1.21285 * 119.99866 * 179.97438 * 14 3 2 16 16 C 1.50704 * 119.99939 * 359.97438 * 14 3 2 17 17 H 1.09000 * 109.47160 * 40.00202 * 16 14 3 18 18 N 1.46893 * 109.47230 * 160.00322 * 16 14 3 19 19 C 1.52997 * 109.47044 * 280.00413 * 16 14 3 20 20 C 1.52998 * 109.47304 * 175.00306 * 19 16 14 21 21 C 1.50700 * 109.47268 * 180.02562 * 20 19 16 22 22 H 1.07997 * 119.99946 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00027 * 179.97438 * 21 20 19 24 24 N 1.31518 * 120.00021 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99981 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47149 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47140 * 120.00224 * 25 23 21 28 28 H 1.48503 * 109.46825 * 239.99773 * 25 23 21 29 29 H 1.08997 * 109.47432 * 300.00705 * 1 2 3 30 30 H 1.09008 * 109.46796 * 60.00361 * 1 2 3 31 31 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47505 * 239.99847 * 2 1 3 33 33 H 1.09000 * 109.47004 * 119.99336 * 2 1 3 34 34 H 1.08993 * 109.47016 * 150.00532 * 4 3 2 35 35 H 1.08998 * 109.46335 * 30.00535 * 4 3 2 36 36 H 1.07994 * 119.93290 * 0.02562 * 6 5 4 37 37 H 1.07997 * 119.99327 * 180.33354 * 7 6 5 38 38 H 1.08003 * 119.98943 * 0.02562 * 10 5 4 39 39 H 1.09007 * 110.56955 * 268.54960 * 12 11 9 40 40 H 1.09003 * 110.57719 * 145.67764 * 12 11 9 41 41 H 1.00906 * 111.00049 * 296.05006 * 18 16 14 42 42 H 1.00900 * 111.00411 * 59.99541 * 18 16 14 43 43 H 1.09002 * 109.47277 * 294.99996 * 19 16 14 44 44 H 1.08998 * 109.47203 * 54.99419 * 19 16 14 45 45 H 1.09008 * 109.46649 * 299.99628 * 20 19 16 46 46 H 1.08993 * 109.47279 * 59.99580 * 20 19 16 47 47 H 0.97000 * 120.00178 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0066 2.7823 1.7036 6 6 0.7776 4.0856 1.3033 7 6 -0.3754 4.7398 1.6954 8 6 -1.3005 4.0929 2.4987 9 6 -1.0697 2.7801 2.9020 10 6 0.0861 2.1293 2.5017 11 8 -2.1184 2.3699 3.6735 12 6 -2.7950 3.5757 4.0750 13 8 -2.4939 4.5053 3.0175 14 6 2.2430 2.0165 -1.1673 15 8 2.6470 3.1601 -1.1673 16 6 1.9923 1.3059 -2.4724 17 1 1.0819 0.7118 -2.3935 18 7 1.8398 2.2954 -3.5473 19 6 3.1746 0.3877 -2.7884 20 6 2.8664 -0.4259 -4.0469 21 6 4.0307 -1.3308 -4.3579 22 1 4.9034 -1.3257 -3.7218 23 6 3.9817 -2.1651 -5.4544 24 7 2.9187 -2.1717 -6.2288 25 14 5.4252 -3.2862 -5.8403 26 1 6.4900 -3.0896 -4.8241 27 1 4.9734 -4.7006 -5.8174 28 1 5.9599 -2.9591 -7.1865 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.0644 2.7985 1.1383 35 1 2.5505 1.3452 2.0283 36 1 1.4988 4.5922 0.6792 37 1 -0.5544 5.7560 1.3767 38 1 0.2676 1.1112 2.8132 39 1 -2.4024 3.9367 5.0257 40 1 -3.8699 3.4076 4.1425 41 1 1.0266 2.8730 -3.3944 42 1 2.6713 2.8593 -3.6404 43 1 4.0679 0.9898 -2.9549 44 1 3.3435 -0.2887 -1.9506 45 1 1.9731 -1.0281 -3.8804 46 1 2.6976 0.2506 -4.8847 47 1 2.8840 -2.7589 -7.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424071288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:06 Heat of formation + Delta-G solvation = -97.423141 kcal Electronic energy + Delta-G solvation = -29192.239094 eV Core-core repulsion = 25146.986686 eV Total energy + Delta-G solvation = -4045.252407 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.18354 -41.39740 -39.20555 -37.33941 -36.96543 -36.82238 -34.81092 -32.74181 -31.92769 -31.72129 -30.80597 -28.61544 -27.34100 -26.43743 -25.16247 -24.14889 -23.99125 -23.04077 -21.88346 -20.17801 -18.97451 -18.66712 -18.63506 -18.33482 -18.12356 -17.27657 -17.16999 -16.86453 -16.42105 -16.07324 -15.57060 -15.41126 -15.21294 -15.00072 -14.94754 -14.63716 -14.40994 -14.21541 -14.08254 -14.03116 -13.80800 -13.69210 -13.39657 -13.18516 -13.01545 -12.80341 -12.68743 -12.41064 -12.15709 -12.13049 -12.06023 -11.80304 -11.59742 -11.53409 -11.17261 -10.93161 -10.47356 -9.93894 -9.75981 -9.58747 -9.08532 -8.11616 -6.21646 -0.01207 0.15378 1.42962 1.44194 1.53356 1.56739 1.73346 1.99924 2.46337 2.47593 2.61326 3.21669 3.41670 3.48790 3.69126 3.75760 3.77775 3.97539 4.04496 4.08234 4.11598 4.17849 4.24215 4.33851 4.36682 4.40200 4.52435 4.58137 4.71835 4.80047 4.86199 4.96065 4.96247 5.00272 5.03386 5.15601 5.28442 5.34808 5.37041 5.45184 5.57286 5.60417 5.86867 6.01298 6.07177 6.11204 6.32213 6.34809 6.52262 6.97448 7.10788 7.46580 8.99797 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002412 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.321904 B =11608.212484 C =11938.429826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 N -0.598 5.598 4 C 0.154 3.846 5 C -0.093 4.093 6 C -0.092 4.092 7 C -0.109 4.109 8 C 0.017 3.983 9 C 0.015 3.985 10 C -0.081 4.081 11 O -0.322 6.322 12 C 0.204 3.796 13 O -0.327 6.327 14 C 0.491 3.509 15 O -0.571 6.571 16 C 0.083 3.917 17 H 0.101 0.899 18 N -0.820 5.820 19 C -0.082 4.082 20 C 0.041 3.959 21 C -0.539 4.539 22 H 0.057 0.943 23 C 0.001 3.999 24 N -0.931 5.931 25 Si 0.959 3.041 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.283 1.283 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.159 0.841 41 H 0.344 0.656 42 H 0.346 0.654 43 H 0.042 0.958 44 H 0.071 0.929 45 H -0.007 1.007 46 H 0.003 0.997 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.048 9.923 24.632 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.030 4.030 3 N -0.329 5.329 4 C 0.032 3.968 5 C -0.094 4.094 6 C -0.111 4.111 7 C -0.128 4.128 8 C -0.027 4.027 9 C -0.029 4.029 10 C -0.100 4.100 11 O -0.239 6.239 12 C 0.094 3.906 13 O -0.244 6.244 14 C 0.278 3.722 15 O -0.451 6.451 16 C -0.032 4.032 17 H 0.119 0.881 18 N -0.349 5.349 19 C -0.120 4.120 20 C 0.004 3.996 21 C -0.577 4.577 22 H 0.075 0.925 23 C -0.197 4.197 24 N -0.571 5.571 25 Si 0.784 3.216 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.209 1.209 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.123 0.877 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.011 0.989 46 H 0.021 0.979 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.202 9.759 24.016 27.508 hybrid contribution 0.238 0.329 0.187 0.447 sum -8.964 10.088 24.202 27.710 Atomic orbital electron populations 1.22289 0.95515 1.03203 1.01974 1.21979 0.94838 0.80966 1.05262 1.48154 1.65034 1.14741 1.05013 1.20473 0.93341 0.97452 0.85532 1.20020 0.97553 0.94298 0.97559 1.21039 0.96609 0.94755 0.98673 1.20257 0.91979 1.01306 0.99226 1.20037 0.87635 0.93699 1.01343 1.19929 0.91279 0.92923 0.98771 1.20082 0.89427 1.01236 0.99269 1.87332 1.38654 1.31921 1.65962 1.26114 1.01338 0.72897 0.90259 1.87333 1.33964 1.52965 1.50096 1.22262 0.75902 0.86715 0.87280 1.90603 1.47423 1.19148 1.87911 1.21659 1.01359 0.94361 0.85858 0.88094 1.58977 1.09275 1.22209 1.44406 1.21428 0.94803 0.96351 0.99393 1.18810 0.94736 0.93267 0.92824 1.21747 1.03300 1.22007 1.10647 0.92487 1.25899 0.98589 0.98978 0.96210 1.70118 1.30300 1.39912 1.16786 0.85497 0.79534 0.78522 0.78061 1.18656 1.20336 1.20895 0.91595 0.94236 0.90017 0.90192 0.86942 0.89501 0.86182 0.84644 0.83791 0.82699 0.87723 0.82355 0.84337 0.84071 0.93872 0.91044 0.98875 0.97875 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 10.10 71.98 0.73 -2.56 16 2 C 0.09 1.78 5.73 86.38 0.49 2.27 16 3 N -0.60 -13.53 2.46 -826.16 -2.03 -15.56 16 4 C 0.15 2.81 5.57 85.63 0.48 3.29 16 5 C -0.09 -1.78 5.39 -19.86 -0.11 -1.88 16 6 C -0.09 -1.96 9.69 22.27 0.22 -1.74 16 7 C -0.11 -2.27 10.06 22.35 0.22 -2.05 16 8 C 0.02 0.38 7.15 22.59 0.16 0.54 16 9 C 0.02 0.31 7.15 22.59 0.16 0.48 16 10 C -0.08 -1.45 7.54 22.34 0.17 -1.28 16 11 O -0.32 -6.16 11.40 -76.01 -0.87 -7.03 16 12 C 0.20 2.66 8.89 113.37 1.01 3.67 16 13 O -0.33 -6.63 11.40 -76.10 -0.87 -7.49 16 14 C 0.49 14.57 6.91 87.66 0.61 15.18 16 15 O -0.57 -19.19 15.34 -3.05 -0.05 -19.24 16 16 C 0.08 2.77 2.31 44.17 0.10 2.87 16 17 H 0.10 3.30 6.12 -2.39 -0.01 3.29 16 18 N -0.82 -28.15 8.44 -171.81 -1.45 -29.60 16 19 C -0.08 -3.23 4.45 30.59 0.14 -3.09 16 20 C 0.04 2.10 4.86 29.85 0.15 2.25 16 21 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 22 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 23 C 0.00 0.05 5.46 84.65 0.46 0.51 16 24 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 25 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 29 H 0.07 1.19 5.26 -2.39 -0.01 1.18 16 30 H 0.04 0.90 7.16 -2.38 -0.02 0.88 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.90 4.83 -2.39 -0.01 1.89 16 33 H 0.11 1.48 7.89 -2.39 -0.02 1.46 16 34 H 0.09 1.79 7.36 -2.39 -0.02 1.77 16 35 H 0.12 1.41 7.84 -2.39 -0.02 1.39 16 36 H 0.14 3.08 7.56 -2.91 -0.02 3.06 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.16 2.07 7.73 -2.91 -0.02 2.05 16 39 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.16 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.34 10.36 9.06 -89.69 -0.81 9.55 16 42 H 0.35 11.97 8.58 -89.69 -0.77 11.20 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.58 6.43 -2.39 -0.02 2.56 16 45 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 46 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 47 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -72.18 381.96 1.70 -70.48 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.56 Total: 30.11 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.22 Total: -11.50 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -3.19 Total: -101.44 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.78 Total: -33.76 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.18 1.70 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424071288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.941 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds