Wall clock time and date at job start Tue Mar 31 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47345 * 2 1 4 4 O 1.42895 * 109.47156 * 240.00009 * 2 1 3 5 5 C 1.42905 * 114.00131 * 89.99948 * 4 2 1 6 6 C 1.53001 * 109.47223 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.48323 * 304.97932 * 6 5 4 8 8 C 1.53092 * 109.48009 * 184.94044 * 6 5 4 9 9 C 1.53177 * 109.16371 * 182.41021 * 8 6 5 10 10 C 1.53181 * 109.03205 * 56.98410 * 9 8 6 11 11 C 1.53089 * 109.16622 * 303.01898 * 10 9 8 12 12 O 1.42902 * 109.41651 * 57.60665 * 11 10 9 13 13 C 1.50699 * 109.47169 * 119.99858 * 2 1 3 14 14 O 1.21283 * 119.99686 * 115.00293 * 13 2 1 15 15 N 1.34776 * 120.00312 * 294.99851 * 13 2 1 16 16 C 1.39464 * 120.00141 * 184.54205 * 15 13 2 17 17 C 1.38603 * 119.57893 * 173.64429 * 16 15 13 18 18 C 1.40806 * 118.79368 * 179.97438 * 17 16 15 19 19 C 1.41548 * 120.99533 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00152 * 20.88206 * 19 18 17 21 21 C 1.40032 * 119.99654 * 200.88314 * 19 18 17 22 22 N 1.30743 * 120.00334 * 13.92803 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 193.92608 * 21 19 18 24 24 H 1.48500 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47384 * 120.00280 * 23 21 19 26 26 H 1.48501 * 109.47264 * 240.00349 * 23 21 19 27 27 C 1.41178 * 118.01102 * 359.97438 * 18 17 16 28 28 C 1.37588 * 119.01477 * 359.97438 * 27 18 17 29 29 N 1.32090 * 121.10776 * 0.02562 * 28 27 18 30 30 H 1.09000 * 109.46864 * 300.00281 * 1 2 3 31 31 H 1.08995 * 109.46950 * 59.99601 * 1 2 3 32 32 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47104 * 300.00400 * 5 4 2 34 34 H 1.09007 * 109.46898 * 59.99905 * 5 4 2 35 35 H 1.09005 * 109.52564 * 302.31973 * 8 6 5 36 36 H 1.09007 * 109.51754 * 62.50631 * 8 6 5 37 37 H 1.08999 * 109.54484 * 297.11823 * 9 8 6 38 38 H 1.08997 * 109.54208 * 176.84771 * 9 8 6 39 39 H 1.09003 * 109.51712 * 183.11302 * 10 9 8 40 40 H 1.08998 * 109.57397 * 62.96148 * 10 9 8 41 41 H 1.09008 * 109.47861 * 297.63160 * 11 10 9 42 42 H 1.08998 * 109.48204 * 177.59756 * 11 10 9 43 43 H 0.97002 * 119.99468 * 4.54685 * 15 13 2 44 44 H 1.07996 * 120.59911 * 359.97438 * 17 16 15 45 45 H 0.96997 * 119.99677 * 179.97438 * 22 21 19 46 46 H 1.07993 * 120.49375 * 180.27617 * 27 18 17 47 47 H 1.08002 * 119.45084 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1830 -2.2941 6 6 2.7091 -0.6406 -3.4788 7 1 3.6083 -1.1822 -3.1855 8 6 3.0337 0.2932 -4.6477 9 6 3.4851 -0.5431 -5.8491 10 6 2.3851 -1.5504 -6.1980 11 6 2.0854 -2.4130 -4.9692 12 8 1.7016 -1.5713 -3.8801 13 6 2.0323 -0.7104 1.2305 14 8 2.6530 -1.7466 1.1214 15 7 1.7920 -0.1941 2.4520 16 6 2.3367 -0.7992 3.5843 17 6 2.1956 -0.1893 4.8209 18 6 2.7516 -0.8149 5.9532 19 6 2.6347 -0.2334 7.2384 20 1 1.8588 0.4917 7.4344 21 6 3.5251 -0.5984 8.2556 22 7 4.6175 -1.2549 7.9638 23 14 3.1522 -0.1474 10.0296 24 1 1.8638 0.5882 10.0929 25 1 3.0560 -1.3845 10.8452 26 1 4.2402 0.7124 10.5609 27 6 3.4283 -2.0401 5.7684 28 6 3.5164 -2.5694 4.5014 29 7 2.9807 -1.9507 3.4646 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.2538 0.6547 -2.5588 34 1 2.9320 0.9514 -2.0450 35 1 2.1449 0.8649 -4.9151 36 1 3.8331 0.9753 -4.3578 37 1 4.4019 -1.0766 -5.5982 38 1 3.6642 0.1112 -6.7022 39 1 2.7206 -2.1869 -7.0168 40 1 1.4830 -1.0169 -6.4974 41 1 2.9766 -2.9779 -4.6955 42 1 1.2736 -3.1032 -5.1989 43 1 1.2400 0.5982 2.5436 44 1 1.6687 0.7488 4.9142 45 1 5.2344 -1.5074 8.6685 46 1 3.8661 -2.5566 6.6097 47 1 4.0328 -3.5061 4.3520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:09 Heat of formation + Delta-G solvation = -99.097184 kcal Electronic energy + Delta-G solvation = -28083.689103 eV Core-core repulsion = 24038.364104 eV Total energy + Delta-G solvation = -4045.324999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.96276 -39.55237 -38.20276 -37.04435 -34.46144 -33.88949 -33.62217 -32.65002 -31.03600 -30.66222 -28.32736 -27.23368 -26.00940 -24.67260 -24.06579 -22.39968 -21.81117 -21.52426 -20.56293 -19.54524 -17.98335 -17.15470 -16.88970 -16.63870 -16.13638 -15.76115 -15.28408 -15.03908 -14.90569 -14.74692 -14.45455 -14.17423 -14.11401 -13.80734 -13.61708 -13.07295 -12.98100 -12.79952 -12.73549 -12.53462 -12.36483 -12.10533 -11.88935 -11.63804 -11.49731 -11.43853 -11.27642 -11.23513 -10.96796 -10.92074 -10.56172 -10.37542 -10.00069 -9.82208 -9.70846 -9.65578 -9.38377 -9.12916 -8.04884 -7.69002 -7.01107 -6.77199 -4.62729 2.59680 2.74097 3.01048 3.04880 3.07310 3.18191 3.49241 3.53424 3.83019 3.92450 4.45027 4.50028 4.55562 4.67823 4.72808 4.77548 4.88949 4.96228 4.97352 5.10665 5.12595 5.21017 5.28260 5.38900 5.44564 5.49375 5.55711 5.60027 5.65349 5.69706 5.72166 5.76808 5.94585 6.02130 6.09228 6.59328 6.60684 6.79753 6.90905 7.00991 7.10825 7.16843 7.42503 7.53634 7.83688 7.90816 8.19144 8.48362 8.70743 8.74459 8.89111 9.73292 10.05890 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032943 B = 0.001905 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.736447 B =14694.571774 C =14980.997847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.082 0.918 4 O -0.346 6.346 5 C 0.067 3.933 6 C 0.093 3.907 7 H 0.069 0.931 8 C -0.148 4.148 9 C -0.121 4.121 10 C -0.157 4.157 11 C 0.059 3.941 12 O -0.368 6.368 13 C 0.497 3.503 14 O -0.455 6.455 15 N -0.659 5.659 16 C 0.350 3.650 17 C -0.305 4.305 18 C 0.141 3.859 19 C -0.450 4.450 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.785 5.785 23 Si 0.915 3.085 24 H -0.260 1.260 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.228 4.228 28 C 0.103 3.897 29 N -0.555 5.555 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.093 0.907 43 H 0.405 0.595 44 H 0.101 0.899 45 H 0.282 0.718 46 H 0.136 0.864 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 5.562 -20.681 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 H 0.100 0.900 4 O -0.264 6.264 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.087 0.913 8 C -0.186 4.186 9 C -0.159 4.159 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.287 6.287 13 C 0.280 3.720 14 O -0.322 6.322 15 N -0.308 5.308 16 C 0.123 3.877 17 C -0.331 4.331 18 C 0.133 3.867 19 C -0.481 4.481 20 H 0.099 0.901 21 C -0.145 4.145 22 N -0.410 5.410 23 Si 0.739 3.261 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.251 4.251 28 C -0.048 4.048 29 N -0.274 5.274 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.239 0.761 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.154 0.846 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.929 4.079 -21.499 22.232 hybrid contribution -0.192 1.387 1.525 2.070 sum -4.121 5.466 -19.974 21.114 Atomic orbital electron populations 1.22212 0.93768 1.03987 1.02662 1.21934 0.95021 0.96024 0.86031 0.90039 1.88121 1.86488 1.33377 1.18382 1.22595 1.00214 0.92455 0.85688 1.22052 0.92021 0.90393 0.92013 0.91281 1.22142 1.02350 0.98561 0.95565 1.21568 0.98468 0.97981 0.97884 1.22217 0.99620 0.98897 0.98779 1.22570 1.00918 0.92293 0.85978 1.88016 1.39868 1.50002 1.50797 1.20341 0.81563 0.86372 0.83760 1.90813 1.35501 1.20668 1.85256 1.43377 1.51739 1.30848 1.04793 1.17975 0.94440 0.91179 0.84149 1.21151 1.17241 1.03279 0.91460 1.17609 0.87382 0.89881 0.91854 1.19621 1.13132 1.21500 0.93889 0.90075 1.26005 0.93586 0.93059 1.01800 1.69771 1.07367 1.28647 1.35253 0.86156 0.79723 0.79222 0.81026 1.18312 1.19567 1.19850 1.22419 1.07174 0.97953 0.97554 1.21932 0.96508 0.97733 0.88639 1.67226 1.16918 1.09394 1.33906 0.91047 0.91479 0.90928 0.92382 0.91776 0.90816 0.90550 0.91586 0.91311 0.90927 0.91098 0.93083 0.88854 0.76072 0.88099 0.90648 0.84650 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.47 37.16 0.35 -1.55 16 2 C 0.07 1.00 3.13 -27.88 -0.09 0.91 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 4 O -0.35 -5.39 9.49 -59.69 -0.57 -5.96 16 5 C 0.07 0.75 5.41 37.16 0.20 0.95 16 6 C 0.09 1.01 2.93 -26.68 -0.08 0.93 16 7 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.15 -1.14 5.42 -26.59 -0.14 -1.28 16 9 C -0.12 -0.84 6.03 -26.55 -0.16 -1.00 16 10 C -0.16 -1.11 6.14 -26.59 -0.16 -1.27 16 11 C 0.06 0.55 6.84 37.20 0.25 0.80 16 12 O -0.37 -4.58 10.37 -40.06 -0.42 -5.00 16 13 C 0.50 9.59 7.14 -10.99 -0.08 9.51 16 14 O -0.46 -11.21 14.77 -14.31 -0.21 -11.42 16 15 N -0.66 -12.41 5.35 -11.49 -0.06 -12.47 16 16 C 0.35 8.38 7.41 -154.71 -1.15 7.23 16 17 C -0.31 -7.37 9.73 -38.48 -0.37 -7.75 16 18 C 0.14 3.73 5.65 -106.55 -0.60 3.13 16 19 C -0.45 -11.56 9.14 -37.65 -0.34 -11.90 16 20 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 21 C 0.07 1.81 5.28 -17.34 -0.09 1.72 16 22 N -0.78 -19.69 10.58 55.55 0.59 -19.10 16 23 Si 0.91 17.94 29.58 -169.99 -5.03 12.92 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 C -0.23 -6.01 8.82 -38.70 -0.34 -6.35 16 28 C 0.10 2.64 11.15 -17.68 -0.20 2.44 16 29 N -0.55 -14.64 7.86 -12.52 -0.10 -14.73 16 30 H 0.07 0.67 7.78 -51.93 -0.40 0.26 16 31 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 34 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.40 5.76 8.33 -40.82 -0.34 5.42 16 44 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 46 H 0.14 3.61 5.87 -52.49 -0.31 3.30 16 47 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -34.15 386.31 -10.29 -44.43 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.32 Total: 8.98 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.00 Total: -3.47 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.43 Total: -46.30 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.19 Total: -22.38 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.15 -10.29 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.664 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds