Wall clock time and date at job start Tue Mar 31 2020 18:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47345 * 2 1 4 4 O 1.42895 * 109.47156 * 240.00009 * 2 1 3 5 5 C 1.42905 * 114.00131 * 89.99948 * 4 2 1 6 6 C 1.53001 * 109.47223 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.48323 * 304.97932 * 6 5 4 8 8 C 1.53092 * 109.48009 * 184.94044 * 6 5 4 9 9 C 1.53177 * 109.16371 * 182.41021 * 8 6 5 10 10 C 1.53181 * 109.03205 * 56.98410 * 9 8 6 11 11 C 1.53089 * 109.16622 * 303.01898 * 10 9 8 12 12 O 1.42902 * 109.41651 * 57.60665 * 11 10 9 13 13 C 1.50699 * 109.47169 * 119.99858 * 2 1 3 14 14 O 1.21283 * 119.99686 * 115.00293 * 13 2 1 15 15 N 1.34776 * 120.00312 * 294.99851 * 13 2 1 16 16 C 1.39464 * 120.00141 * 184.54205 * 15 13 2 17 17 C 1.38603 * 119.57893 * 173.64429 * 16 15 13 18 18 C 1.40806 * 118.79368 * 179.97438 * 17 16 15 19 19 C 1.41548 * 120.99533 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00152 * 20.88206 * 19 18 17 21 21 C 1.40032 * 119.99654 * 200.88314 * 19 18 17 22 22 N 1.30743 * 120.00334 * 13.92803 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 193.92608 * 21 19 18 24 24 H 1.48500 * 109.47120 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47384 * 120.00280 * 23 21 19 26 26 H 1.48501 * 109.47264 * 240.00349 * 23 21 19 27 27 C 1.41178 * 118.01102 * 359.97438 * 18 17 16 28 28 C 1.37588 * 119.01477 * 359.97438 * 27 18 17 29 29 N 1.32090 * 121.10776 * 0.02562 * 28 27 18 30 30 H 1.09000 * 109.46864 * 300.00281 * 1 2 3 31 31 H 1.08995 * 109.46950 * 59.99601 * 1 2 3 32 32 H 1.08995 * 109.47018 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47104 * 300.00400 * 5 4 2 34 34 H 1.09007 * 109.46898 * 59.99905 * 5 4 2 35 35 H 1.09005 * 109.52564 * 302.31973 * 8 6 5 36 36 H 1.09007 * 109.51754 * 62.50631 * 8 6 5 37 37 H 1.08999 * 109.54484 * 297.11823 * 9 8 6 38 38 H 1.08997 * 109.54208 * 176.84771 * 9 8 6 39 39 H 1.09003 * 109.51712 * 183.11302 * 10 9 8 40 40 H 1.08998 * 109.57397 * 62.96148 * 10 9 8 41 41 H 1.09008 * 109.47861 * 297.63160 * 11 10 9 42 42 H 1.08998 * 109.48204 * 177.59756 * 11 10 9 43 43 H 0.97002 * 119.99468 * 4.54685 * 15 13 2 44 44 H 1.07996 * 120.59911 * 359.97438 * 17 16 15 45 45 H 0.96997 * 119.99677 * 179.97438 * 22 21 19 46 46 H 1.07993 * 120.49375 * 180.27617 * 27 18 17 47 47 H 1.08002 * 119.45084 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1830 -2.2941 6 6 2.7091 -0.6406 -3.4788 7 1 3.6083 -1.1822 -3.1855 8 6 3.0337 0.2932 -4.6477 9 6 3.4851 -0.5431 -5.8491 10 6 2.3851 -1.5504 -6.1980 11 6 2.0854 -2.4130 -4.9692 12 8 1.7016 -1.5713 -3.8801 13 6 2.0323 -0.7104 1.2305 14 8 2.6530 -1.7466 1.1214 15 7 1.7920 -0.1941 2.4520 16 6 2.3367 -0.7992 3.5843 17 6 2.1956 -0.1893 4.8209 18 6 2.7516 -0.8149 5.9532 19 6 2.6347 -0.2334 7.2384 20 1 1.8588 0.4917 7.4344 21 6 3.5251 -0.5984 8.2556 22 7 4.6175 -1.2549 7.9638 23 14 3.1522 -0.1474 10.0296 24 1 1.8638 0.5882 10.0929 25 1 3.0560 -1.3845 10.8452 26 1 4.2402 0.7124 10.5609 27 6 3.4283 -2.0401 5.7684 28 6 3.5164 -2.5694 4.5014 29 7 2.9807 -1.9507 3.4646 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.2538 0.6547 -2.5588 34 1 2.9320 0.9514 -2.0450 35 1 2.1449 0.8649 -4.9151 36 1 3.8331 0.9753 -4.3578 37 1 4.4019 -1.0766 -5.5982 38 1 3.6642 0.1112 -6.7022 39 1 2.7206 -2.1869 -7.0168 40 1 1.4830 -1.0169 -6.4974 41 1 2.9766 -2.9779 -4.6955 42 1 1.2736 -3.1032 -5.1989 43 1 1.2400 0.5982 2.5436 44 1 1.6687 0.7488 4.9142 45 1 5.2344 -1.5074 8.6685 46 1 3.8661 -2.5566 6.6097 47 1 4.0328 -3.5061 4.3520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:08 Heat of formation + Delta-G solvation = -120.186658 kcal Electronic energy + Delta-G solvation = -28084.603612 eV Core-core repulsion = 24038.364104 eV Total energy + Delta-G solvation = -4046.239508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41028 -40.49237 -39.77730 -38.37434 -36.27194 -35.38531 -34.56016 -33.53102 -32.60557 -32.06865 -30.07556 -27.99636 -27.94211 -25.72535 -24.95112 -23.69706 -23.29730 -23.06405 -21.33727 -21.01550 -19.76061 -18.49156 -18.07038 -17.61323 -17.40305 -16.95531 -16.77926 -16.36804 -16.05790 -15.98389 -15.81300 -15.48957 -15.35293 -15.17976 -14.76066 -14.58466 -14.26467 -14.16381 -13.68907 -13.59886 -13.49742 -13.28608 -13.17637 -12.88684 -12.85267 -12.76630 -12.47416 -12.18058 -12.05349 -11.97603 -11.82220 -11.60197 -11.48682 -11.28057 -11.20594 -10.99227 -10.56928 -10.39963 -10.01480 -9.58483 -8.88172 -8.62323 -6.59122 0.74980 0.95333 1.41237 1.53956 1.57435 1.79016 1.86101 2.19362 2.75786 2.80508 2.82638 3.54343 3.74413 3.80961 3.90042 3.91521 3.94417 4.03945 4.05084 4.16154 4.19973 4.29968 4.40556 4.48544 4.63858 4.65062 4.71994 4.73355 4.81914 4.84124 4.86609 4.92668 4.93684 5.03137 5.05055 5.10709 5.15732 5.20347 5.25839 5.36696 5.48011 5.62987 5.95687 6.01357 6.18962 6.30971 6.45492 6.61822 6.78881 6.82326 7.30426 7.85040 8.24754 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032943 B = 0.001905 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.736447 B =14694.571774 C =14980.997847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 H 0.122 0.878 4 O -0.385 6.385 5 C 0.061 3.939 6 C 0.087 3.913 7 H 0.046 0.954 8 C -0.141 4.141 9 C -0.124 4.124 10 C -0.151 4.151 11 C 0.050 3.950 12 O -0.396 6.396 13 C 0.491 3.509 14 O -0.518 6.518 15 N -0.645 5.645 16 C 0.346 3.654 17 C -0.311 4.311 18 C 0.112 3.888 19 C -0.474 4.474 20 H 0.090 0.910 21 C 0.033 3.967 22 N -0.814 5.814 23 Si 0.994 3.006 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.248 4.248 28 C 0.094 3.906 29 N -0.585 5.585 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.100 0.900 43 H 0.427 0.573 44 H 0.127 0.873 45 H 0.292 0.708 46 H 0.126 0.874 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 8.282 -21.250 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.140 0.860 4 O -0.304 6.304 5 C -0.015 4.015 6 C 0.029 3.971 7 H 0.064 0.936 8 C -0.179 4.179 9 C -0.161 4.161 10 C -0.189 4.189 11 C -0.026 4.026 12 O -0.316 6.316 13 C 0.277 3.723 14 O -0.389 6.389 15 N -0.295 5.295 16 C 0.118 3.882 17 C -0.337 4.337 18 C 0.103 3.897 19 C -0.505 4.505 20 H 0.108 0.892 21 C -0.184 4.184 22 N -0.439 5.439 23 Si 0.813 3.187 24 H -0.176 1.176 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.272 4.272 28 C -0.057 4.057 29 N -0.305 5.305 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.267 0.733 44 H 0.145 0.855 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.075 6.845 -22.106 23.691 hybrid contribution 0.190 0.513 1.648 1.737 sum -4.885 7.358 -20.457 22.283 Atomic orbital electron populations 1.22217 0.91441 1.03145 1.05182 1.21969 0.96452 0.96478 0.83038 0.86013 1.88090 1.86923 1.35694 1.19683 1.22887 1.01880 0.92404 0.84304 1.22182 0.90820 0.90712 0.93358 0.93634 1.22107 1.03212 0.98106 0.94426 1.21618 0.98101 0.98138 0.98244 1.22171 0.99924 0.98850 0.97927 1.22752 1.00855 0.92630 0.86381 1.87963 1.40806 1.50818 1.52025 1.21493 0.79991 0.85721 0.85069 1.90783 1.38322 1.23598 1.86192 1.43328 1.51321 1.31165 1.03641 1.18297 0.93558 0.90533 0.85840 1.21364 1.17269 1.04134 0.90957 1.18045 0.88041 0.90278 0.93292 1.19957 1.13916 1.22218 0.94364 0.89186 1.26979 0.92832 0.92449 1.06183 1.69824 1.08152 1.28754 1.37205 0.84980 0.79812 0.79087 0.74774 1.17567 1.19016 1.18962 1.22384 1.08602 0.98692 0.97473 1.22164 0.96584 0.98319 0.88596 1.67322 1.18186 1.10861 1.34143 0.88799 0.88655 0.93452 0.90418 0.89677 0.89909 0.89152 0.92044 0.89410 0.89349 0.90773 0.93919 0.88238 0.73341 0.85476 0.89672 0.85630 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 9.47 71.98 0.68 -2.56 16 2 C 0.08 2.12 3.13 29.85 0.09 2.22 16 3 H 0.12 2.18 7.79 -2.39 -0.02 2.16 16 4 O -0.39 -11.78 9.49 -125.59 -1.19 -12.97 16 5 C 0.06 1.26 5.41 71.98 0.39 1.64 16 6 C 0.09 1.85 2.93 30.63 0.09 1.94 16 7 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 8 C -0.14 -1.89 5.42 30.68 0.17 -1.72 16 9 C -0.12 -1.48 6.03 30.71 0.19 -1.29 16 10 C -0.15 -1.91 6.14 30.68 0.19 -1.73 16 11 C 0.05 0.93 6.84 72.01 0.49 1.42 16 12 O -0.40 -9.88 10.37 -144.36 -1.50 -11.38 16 13 C 0.49 18.88 7.14 87.66 0.63 19.50 16 14 O -0.52 -26.35 14.77 15.95 0.24 -26.12 16 15 N -0.64 -23.71 5.35 -308.66 -1.65 -25.37 16 16 C 0.35 16.70 7.41 132.76 0.98 17.69 16 17 C -0.31 -15.05 9.73 22.99 0.22 -14.83 16 18 C 0.11 6.02 5.65 -21.11 -0.12 5.90 16 19 C -0.47 -24.37 9.14 23.52 0.22 -24.15 16 20 H 0.09 4.32 7.88 -2.91 -0.02 4.29 16 21 C 0.03 1.56 5.28 85.29 0.45 2.01 16 22 N -0.81 -41.22 10.58 21.84 0.23 -40.99 16 23 Si 0.99 35.94 29.58 68.60 2.03 37.97 16 24 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 25 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 26 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 27 C -0.25 -13.58 8.82 22.84 0.20 -13.38 16 28 C 0.09 5.03 11.15 84.50 0.94 5.97 16 29 N -0.58 -31.82 7.86 -193.53 -1.52 -33.34 16 30 H 0.09 1.43 7.78 -2.39 -0.02 1.41 16 31 H 0.09 1.40 7.87 -2.39 -0.02 1.38 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.27 7.87 -2.39 -0.02 1.25 16 34 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 35 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.43 11.19 8.33 -92.71 -0.77 10.42 16 44 H 0.13 5.29 8.06 -2.91 -0.02 5.26 16 45 H 0.29 13.22 8.29 -92.71 -0.77 12.46 16 46 H 0.13 7.00 5.87 -2.91 -0.02 6.98 16 47 H 0.14 6.56 8.06 -2.91 -0.02 6.54 16 Total: -1.00 -78.12 386.31 2.65 -75.47 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: 0.20 Total: 38.08 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 5.81 Total: -1.37 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -2.94 Total: -99.69 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -2.45 Total: -50.47 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -78.12 2.65 -75.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.715 kcal (2) G-P(sol) polarization free energy of solvation -78.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds