Wall clock time and date at job start Tue Mar 31 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 O 1.42893 * 109.47241 * 120.00250 * 2 1 3 5 5 C 1.42906 * 114.00204 * 270.00040 * 4 2 1 6 6 C 1.52997 * 109.47337 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.47921 * 304.97962 * 6 5 4 8 8 C 1.53091 * 109.48121 * 184.94338 * 6 5 4 9 9 C 1.53173 * 109.16388 * 182.41195 * 8 6 5 10 10 C 1.53169 * 109.03958 * 56.97779 * 9 8 6 11 11 C 1.53096 * 109.16668 * 303.02274 * 10 9 8 12 12 O 1.42902 * 109.47906 * 64.99883 * 6 5 4 13 13 C 1.50703 * 109.46871 * 240.00148 * 2 1 3 14 14 O 1.21282 * 120.00099 * 245.00040 * 13 2 1 15 15 N 1.34776 * 119.99888 * 65.00191 * 13 2 1 16 16 C 1.39474 * 119.99501 * 184.82654 * 15 13 2 17 17 C 1.38596 * 119.57434 * 174.79813 * 16 15 13 18 18 C 1.40810 * 118.79392 * 179.97438 * 17 16 15 19 19 C 1.41540 * 121.00131 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99669 * 23.44806 * 19 18 17 21 21 C 1.40025 * 120.00524 * 203.45100 * 19 18 17 22 22 N 1.30748 * 120.00051 * 17.28886 * 21 19 18 23 23 Si 1.86807 * 120.00238 * 197.29243 * 21 19 18 24 24 H 1.48495 * 109.47244 * 59.99781 * 23 21 19 25 25 H 1.48497 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46673 * 299.99512 * 23 21 19 27 27 C 1.41175 * 118.00739 * 0.02562 * 18 17 16 28 28 C 1.37590 * 119.01660 * 0.02562 * 27 18 17 29 29 N 1.32085 * 121.10450 * 359.97301 * 28 27 18 30 30 H 1.09001 * 109.47240 * 59.99857 * 1 2 3 31 31 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47051 * 299.99970 * 1 2 3 33 33 H 1.09000 * 109.46581 * 300.00002 * 5 4 2 34 34 H 1.09005 * 109.46591 * 59.99468 * 5 4 2 35 35 H 1.08999 * 109.51916 * 302.31641 * 8 6 5 36 36 H 1.09000 * 109.52331 * 62.49884 * 8 6 5 37 37 H 1.08999 * 109.54104 * 297.10880 * 9 8 6 38 38 H 1.09002 * 109.54044 * 176.84545 * 9 8 6 39 39 H 1.09004 * 109.52771 * 183.11564 * 10 9 8 40 40 H 1.09001 * 109.52226 * 62.92622 * 10 9 8 41 41 H 1.09001 * 109.47634 * 297.62701 * 11 10 9 42 42 H 1.08995 * 109.48360 * 177.58936 * 11 10 9 43 43 H 0.96996 * 120.00441 * 4.83162 * 15 13 2 44 44 H 1.07996 * 120.60431 * 359.97438 * 17 16 15 45 45 H 0.96999 * 119.99902 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.49322 * 180.27375 * 27 18 17 47 47 H 1.07997 * 119.44813 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6409 3.4791 7 1 2.0190 -1.4633 3.6719 8 6 2.7981 0.2514 4.7199 9 6 3.3639 -0.5648 5.8861 10 6 4.7258 -1.1369 5.4812 11 6 4.5612 -1.9756 4.2111 12 8 4.0023 -1.1647 3.1756 13 6 2.0323 -0.7104 -1.2305 14 8 2.6529 -1.7467 -1.1216 15 7 1.7918 -0.1941 -2.4520 16 6 2.1678 -0.9009 -3.5941 17 6 1.8205 -0.4147 -4.8447 18 6 2.2090 -1.1411 -5.9867 19 6 1.8798 -0.6873 -7.2863 20 1 1.6767 0.3596 -7.4573 21 6 1.8173 -1.5955 -8.3502 22 7 1.7246 -2.8775 -8.1108 23 14 1.8666 -0.9755 -10.1117 24 1 3.1356 -0.2396 -10.3422 25 1 1.7868 -2.1281 -11.0446 26 1 0.7169 -0.0659 -10.3485 27 6 2.9367 -2.3359 -5.7965 28 6 3.2342 -2.7394 -4.5152 29 7 2.8512 -2.0288 -3.4698 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9512 2.0450 34 1 1.2537 0.6546 2.5588 35 1 3.4553 1.0962 4.5139 36 1 1.8043 0.6165 4.9790 37 1 2.6819 -1.3808 6.1247 38 1 3.4833 0.0790 6.7575 39 1 5.1108 -1.7647 6.2849 40 1 5.4220 -0.3201 5.2906 41 1 3.8966 -2.8154 4.4137 42 1 5.5345 -2.3502 3.8941 43 1 1.3574 0.6690 -2.5369 44 1 1.2622 0.5047 -4.9416 45 1 1.6817 -3.5066 -8.8479 46 1 3.2587 -2.9223 -6.6444 47 1 3.7909 -3.6520 -4.3617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:12 Heat of formation + Delta-G solvation = -99.044010 kcal Electronic energy + Delta-G solvation = -28143.081714 eV Core-core repulsion = 24097.759020 eV Total energy + Delta-G solvation = -4045.322694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.94740 -39.53153 -38.19680 -37.03484 -34.42511 -33.87008 -33.60198 -32.64077 -31.03594 -30.65929 -28.34338 -27.23870 -25.97956 -24.62035 -24.09727 -22.38741 -21.80034 -21.51952 -20.54531 -19.54609 -17.96417 -17.11712 -16.90164 -16.60113 -16.14207 -15.70052 -15.19097 -15.06491 -15.00492 -14.76705 -14.41418 -14.18791 -14.04119 -13.88223 -13.49564 -13.04062 -12.94352 -12.88015 -12.58268 -12.57076 -12.37909 -12.20209 -12.02414 -11.57862 -11.43747 -11.39005 -11.29225 -11.23214 -10.95486 -10.91620 -10.51836 -10.39560 -10.01853 -9.85472 -9.66520 -9.61706 -9.33945 -9.10825 -8.03014 -7.65763 -7.00635 -6.80404 -4.59943 2.61076 2.78393 3.01964 3.03446 3.06170 3.20988 3.50493 3.57673 3.84445 3.92705 4.45591 4.50508 4.56514 4.67743 4.73227 4.76749 4.88632 4.96708 5.00889 5.07827 5.11896 5.18296 5.29889 5.41644 5.44890 5.49103 5.55806 5.59644 5.62124 5.69972 5.72137 5.79190 5.95223 6.02458 6.06935 6.60573 6.61722 6.80192 6.92665 7.02789 7.13307 7.15855 7.43059 7.52189 7.84783 7.89731 8.20328 8.47868 8.71734 8.75313 8.90912 9.74224 10.07529 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001968 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.097588 B =14222.978890 C =14792.054059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.082 0.918 4 O -0.346 6.346 5 C 0.067 3.933 6 C 0.094 3.906 7 H 0.067 0.933 8 C -0.149 4.149 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.059 3.941 12 O -0.364 6.364 13 C 0.496 3.504 14 O -0.452 6.452 15 N -0.660 5.660 16 C 0.352 3.648 17 C -0.306 4.306 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.783 5.783 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.226 4.226 28 C 0.105 3.895 29 N -0.555 5.555 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.404 0.596 44 H 0.101 0.899 45 H 0.284 0.716 46 H 0.126 0.874 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 7.737 21.167 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.099 0.901 4 O -0.264 6.264 5 C -0.010 4.010 6 C 0.035 3.965 7 H 0.085 0.915 8 C -0.186 4.186 9 C -0.158 4.158 10 C -0.196 4.196 11 C -0.018 4.018 12 O -0.283 6.283 13 C 0.279 3.721 14 O -0.318 6.318 15 N -0.308 5.308 16 C 0.125 3.875 17 C -0.332 4.332 18 C 0.137 3.863 19 C -0.487 4.487 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.408 5.408 23 Si 0.737 3.263 24 H -0.187 1.187 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.249 4.249 28 C -0.046 4.046 29 N -0.274 5.274 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.239 0.761 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.144 0.856 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.236 6.227 21.904 22.774 hybrid contribution -0.724 1.216 -1.448 2.025 sum -0.959 7.442 20.456 21.789 Atomic orbital electron populations 1.22228 0.93799 1.03944 1.02752 1.21926 0.94786 0.96149 0.86156 0.90052 1.88120 1.86469 1.33254 1.18514 1.22596 0.99154 0.92944 0.86313 1.22031 0.85995 0.95827 0.92603 0.91534 1.22145 1.02214 0.99197 0.95088 1.21561 0.96803 0.99772 0.97690 1.22228 0.97847 1.00906 0.98608 1.22575 0.99172 0.92506 0.87500 1.88085 1.31811 1.67612 1.40792 1.20327 0.81439 0.86644 0.83723 1.90823 1.34554 1.21348 1.85115 1.43377 1.60657 1.22430 1.04349 1.17982 0.94649 0.91023 0.83891 1.21158 1.14918 1.06107 0.90980 1.17567 0.86597 0.90081 0.92027 1.19518 1.41831 0.95697 0.91680 0.90106 1.25973 0.91870 0.94400 1.01939 1.69785 1.33184 1.02891 1.34929 0.86297 0.80082 0.79329 0.80626 1.18688 1.20216 1.18905 1.22197 1.04737 1.01078 0.96908 1.21900 0.97199 0.97131 0.88374 1.67232 1.18613 1.07531 1.34039 0.90812 0.90992 0.91617 0.92364 0.91829 0.90765 0.90646 0.91680 0.91337 0.90911 0.91033 0.93181 0.88742 0.76112 0.88079 0.90503 0.85586 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.48 37.16 0.35 -1.51 16 2 C 0.07 1.00 3.13 -27.88 -0.09 0.91 16 3 H 0.08 0.88 7.79 -51.93 -0.40 0.48 16 4 O -0.35 -5.37 9.49 -59.69 -0.57 -5.94 16 5 C 0.07 0.74 5.41 37.16 0.20 0.94 16 6 C 0.09 1.01 2.93 -26.69 -0.08 0.93 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 8 C -0.15 -1.12 5.42 -26.59 -0.14 -1.26 16 9 C -0.12 -0.82 6.03 -26.55 -0.16 -0.98 16 10 C -0.16 -1.18 6.14 -26.59 -0.16 -1.35 16 11 C 0.06 0.59 6.84 37.21 0.25 0.85 16 12 O -0.36 -4.94 10.37 -40.06 -0.42 -5.36 16 13 C 0.50 9.67 7.14 -10.98 -0.08 9.60 16 14 O -0.45 -11.28 14.76 -14.30 -0.21 -11.49 16 15 N -0.66 -12.50 5.35 -11.49 -0.06 -12.56 16 16 C 0.35 8.47 7.42 -154.71 -1.15 7.32 16 17 C -0.31 -7.42 9.73 -38.48 -0.37 -7.79 16 18 C 0.15 3.87 5.61 -106.55 -0.60 3.27 16 19 C -0.46 -11.76 9.12 -37.65 -0.34 -12.11 16 20 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 21 C 0.08 1.91 5.19 -17.34 -0.09 1.82 16 22 N -0.78 -19.80 10.93 55.55 0.61 -19.20 16 23 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 27 C -0.23 -5.98 8.79 -38.70 -0.34 -6.32 16 28 C 0.10 2.70 11.15 -17.68 -0.20 2.51 16 29 N -0.55 -14.73 7.85 -12.52 -0.10 -14.83 16 30 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.40 5.78 8.65 -40.82 -0.35 5.42 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 46 H 0.13 3.36 6.20 -52.48 -0.33 3.03 16 47 H 0.12 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -34.71 387.46 -10.29 -45.00 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.36 Total: 8.70 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.99 Total: -3.18 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.45 Total: -46.59 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.19 Total: -22.79 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.71 -10.29 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.040 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds