Wall clock time and date at job start Tue Mar 31 2020 18:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 O 1.42893 * 109.47241 * 120.00250 * 2 1 3 5 5 C 1.42906 * 114.00204 * 270.00040 * 4 2 1 6 6 C 1.52997 * 109.47337 * 179.97438 * 5 4 2 7 7 H 1.09001 * 109.47921 * 304.97962 * 6 5 4 8 8 C 1.53091 * 109.48121 * 184.94338 * 6 5 4 9 9 C 1.53173 * 109.16388 * 182.41195 * 8 6 5 10 10 C 1.53169 * 109.03958 * 56.97779 * 9 8 6 11 11 C 1.53096 * 109.16668 * 303.02274 * 10 9 8 12 12 O 1.42902 * 109.47906 * 64.99883 * 6 5 4 13 13 C 1.50703 * 109.46871 * 240.00148 * 2 1 3 14 14 O 1.21282 * 120.00099 * 245.00040 * 13 2 1 15 15 N 1.34776 * 119.99888 * 65.00191 * 13 2 1 16 16 C 1.39474 * 119.99501 * 184.82654 * 15 13 2 17 17 C 1.38596 * 119.57434 * 174.79813 * 16 15 13 18 18 C 1.40810 * 118.79392 * 179.97438 * 17 16 15 19 19 C 1.41540 * 121.00131 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99669 * 23.44806 * 19 18 17 21 21 C 1.40025 * 120.00524 * 203.45100 * 19 18 17 22 22 N 1.30748 * 120.00051 * 17.28886 * 21 19 18 23 23 Si 1.86807 * 120.00238 * 197.29243 * 21 19 18 24 24 H 1.48495 * 109.47244 * 59.99781 * 23 21 19 25 25 H 1.48497 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46673 * 299.99512 * 23 21 19 27 27 C 1.41175 * 118.00739 * 0.02562 * 18 17 16 28 28 C 1.37590 * 119.01660 * 0.02562 * 27 18 17 29 29 N 1.32085 * 121.10450 * 359.97301 * 28 27 18 30 30 H 1.09001 * 109.47240 * 59.99857 * 1 2 3 31 31 H 1.08997 * 109.47486 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47051 * 299.99970 * 1 2 3 33 33 H 1.09000 * 109.46581 * 300.00002 * 5 4 2 34 34 H 1.09005 * 109.46591 * 59.99468 * 5 4 2 35 35 H 1.08999 * 109.51916 * 302.31641 * 8 6 5 36 36 H 1.09000 * 109.52331 * 62.49884 * 8 6 5 37 37 H 1.08999 * 109.54104 * 297.10880 * 9 8 6 38 38 H 1.09002 * 109.54044 * 176.84545 * 9 8 6 39 39 H 1.09004 * 109.52771 * 183.11564 * 10 9 8 40 40 H 1.09001 * 109.52226 * 62.92622 * 10 9 8 41 41 H 1.09001 * 109.47634 * 297.62701 * 11 10 9 42 42 H 1.08995 * 109.48360 * 177.58936 * 11 10 9 43 43 H 0.96996 * 120.00441 * 4.83162 * 15 13 2 44 44 H 1.07996 * 120.60431 * 359.97438 * 17 16 15 45 45 H 0.96999 * 119.99902 * 180.02562 * 22 21 19 46 46 H 1.08004 * 120.49322 * 180.27375 * 27 18 17 47 47 H 1.07997 * 119.44813 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6409 3.4791 7 1 2.0190 -1.4633 3.6719 8 6 2.7981 0.2514 4.7199 9 6 3.3639 -0.5648 5.8861 10 6 4.7258 -1.1369 5.4812 11 6 4.5612 -1.9756 4.2111 12 8 4.0023 -1.1647 3.1756 13 6 2.0323 -0.7104 -1.2305 14 8 2.6529 -1.7467 -1.1216 15 7 1.7918 -0.1941 -2.4520 16 6 2.1678 -0.9009 -3.5941 17 6 1.8205 -0.4147 -4.8447 18 6 2.2090 -1.1411 -5.9867 19 6 1.8798 -0.6873 -7.2863 20 1 1.6767 0.3596 -7.4573 21 6 1.8173 -1.5955 -8.3502 22 7 1.7246 -2.8775 -8.1108 23 14 1.8666 -0.9755 -10.1117 24 1 3.1356 -0.2396 -10.3422 25 1 1.7868 -2.1281 -11.0446 26 1 0.7169 -0.0659 -10.3485 27 6 2.9367 -2.3359 -5.7965 28 6 3.2342 -2.7394 -4.5152 29 7 2.8512 -2.0288 -3.4698 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9512 2.0450 34 1 1.2537 0.6546 2.5588 35 1 3.4553 1.0962 4.5139 36 1 1.8043 0.6165 4.9790 37 1 2.6819 -1.3808 6.1247 38 1 3.4833 0.0790 6.7575 39 1 5.1108 -1.7647 6.2849 40 1 5.4220 -0.3201 5.2906 41 1 3.8966 -2.8154 4.4137 42 1 5.5345 -2.3502 3.8941 43 1 1.3574 0.6690 -2.5369 44 1 1.2622 0.5047 -4.9416 45 1 1.6817 -3.5066 -8.8479 46 1 3.2587 -2.9223 -6.6444 47 1 3.7909 -3.6520 -4.3617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:11 Heat of formation + Delta-G solvation = -120.896512 kcal Electronic energy + Delta-G solvation = -28144.029310 eV Core-core repulsion = 24097.759020 eV Total energy + Delta-G solvation = -4046.270289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40306 -40.48962 -39.77611 -38.37167 -36.24878 -35.38173 -34.56060 -33.52261 -32.61772 -32.06195 -30.10085 -28.00275 -27.92682 -25.69155 -24.97504 -23.69816 -23.29823 -23.05055 -21.34369 -21.00401 -19.75190 -18.45003 -18.08492 -17.62346 -17.33990 -16.97132 -16.73832 -16.38139 -16.19810 -16.02612 -15.71828 -15.40540 -15.37867 -15.22581 -14.76701 -14.54760 -14.26522 -14.16113 -13.66710 -13.57750 -13.46196 -13.28005 -13.16928 -12.98757 -12.93638 -12.77789 -12.34161 -12.17769 -12.05948 -11.98716 -11.87727 -11.59169 -11.45933 -11.24234 -11.17611 -11.01170 -10.55980 -10.39114 -10.01206 -9.56600 -8.88906 -8.66748 -6.57654 0.74625 0.96688 1.40862 1.53206 1.56645 1.79129 1.88204 2.19538 2.78034 2.79727 2.83947 3.54690 3.73738 3.81627 3.90341 3.91697 3.94342 4.03362 4.08175 4.16150 4.20256 4.29984 4.40046 4.48107 4.64994 4.66702 4.72095 4.73002 4.81353 4.84037 4.86721 4.92671 4.92944 5.02742 5.05865 5.10670 5.16360 5.20765 5.22712 5.37429 5.46404 5.61706 5.92472 6.02070 6.19631 6.34607 6.45414 6.60909 6.78947 6.81262 7.31656 7.84942 8.24726 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001968 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.097588 B =14222.978890 C =14792.054059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 H 0.121 0.879 4 O -0.385 6.385 5 C 0.061 3.939 6 C 0.085 3.915 7 H 0.057 0.943 8 C -0.141 4.141 9 C -0.121 4.121 10 C -0.152 4.152 11 C 0.050 3.950 12 O -0.405 6.405 13 C 0.489 3.511 14 O -0.516 6.516 15 N -0.645 5.645 16 C 0.348 3.652 17 C -0.312 4.312 18 C 0.116 3.884 19 C -0.480 4.480 20 H 0.091 0.909 21 C 0.036 3.964 22 N -0.813 5.813 23 Si 0.991 3.009 24 H -0.259 1.259 25 H -0.269 1.269 26 H -0.254 1.254 27 C -0.245 4.245 28 C 0.096 3.904 29 N -0.585 5.585 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.427 0.573 44 H 0.128 0.872 45 H 0.293 0.707 46 H 0.116 0.884 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 10.489 21.967 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.138 0.862 4 O -0.304 6.304 5 C -0.015 4.015 6 C 0.027 3.973 7 H 0.075 0.925 8 C -0.178 4.178 9 C -0.159 4.159 10 C -0.190 4.190 11 C -0.026 4.026 12 O -0.325 6.325 13 C 0.275 3.725 14 O -0.387 6.387 15 N -0.295 5.295 16 C 0.119 3.881 17 C -0.338 4.338 18 C 0.108 3.892 19 C -0.510 4.510 20 H 0.109 0.891 21 C -0.182 4.182 22 N -0.438 5.438 23 Si 0.811 3.189 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.178 1.178 27 C -0.269 4.269 28 C -0.055 4.055 29 N -0.306 5.306 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.266 0.734 44 H 0.146 0.854 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.711 9.030 22.743 24.530 hybrid contribution -0.273 0.319 -1.650 1.703 sum -1.984 9.349 21.093 23.157 Atomic orbital electron populations 1.22237 0.91153 1.03198 1.05443 1.21960 0.96414 0.96478 0.83066 0.86178 1.88088 1.86923 1.35541 1.19846 1.22921 1.01139 0.92532 0.84940 1.22266 0.84673 0.96238 0.94087 0.92501 1.22113 1.03674 0.98469 0.93577 1.21607 0.96099 1.00133 0.98038 1.22181 0.98620 1.00634 0.97573 1.22731 0.98810 0.92813 0.88235 1.88023 1.33264 1.68351 1.42813 1.21554 0.79815 0.86020 0.85124 1.90791 1.37472 1.24377 1.86106 1.43336 1.60043 1.22945 1.03182 1.18308 0.93561 0.90516 0.85669 1.21375 1.15042 1.06866 0.90484 1.18004 0.87124 0.90588 0.93490 1.19869 1.42493 0.96538 0.92140 0.89123 1.26946 0.90633 0.94258 1.06323 1.69843 1.32881 1.04250 1.36821 0.85113 0.80302 0.78942 0.74546 1.18359 1.19330 1.17790 1.22156 1.06121 1.01844 0.96739 1.22135 0.97311 0.97695 0.88341 1.67329 1.20012 1.08936 1.34289 0.89076 0.93453 0.87947 0.92106 0.88019 0.90689 0.88285 0.91414 0.89403 0.89251 0.91364 0.93321 0.89152 0.73352 0.85446 0.89623 0.86585 0.84736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.48 71.98 0.68 -2.42 16 2 C 0.08 2.12 3.13 29.85 0.09 2.22 16 3 H 0.12 2.17 7.79 -2.38 -0.02 2.15 16 4 O -0.39 -11.69 9.49 -125.59 -1.19 -12.88 16 5 C 0.06 1.21 5.41 71.98 0.39 1.60 16 6 C 0.08 1.76 2.93 30.62 0.09 1.85 16 7 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 8 C -0.14 -1.78 5.42 30.68 0.17 -1.61 16 9 C -0.12 -1.37 6.03 30.71 0.19 -1.19 16 10 C -0.15 -2.12 6.14 30.68 0.19 -1.93 16 11 C 0.05 1.04 6.84 72.01 0.49 1.53 16 12 O -0.40 -11.25 10.37 -144.36 -1.50 -12.75 16 13 C 0.49 19.07 7.14 87.66 0.63 19.70 16 14 O -0.52 -26.78 14.76 15.95 0.24 -26.54 16 15 N -0.65 -24.03 5.35 -308.66 -1.65 -25.68 16 16 C 0.35 16.95 7.42 132.75 0.98 17.94 16 17 C -0.31 -15.20 9.73 22.98 0.22 -14.98 16 18 C 0.12 6.30 5.61 -21.11 -0.12 6.18 16 19 C -0.48 -24.82 9.12 23.52 0.21 -24.60 16 20 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 21 C 0.04 1.75 5.19 85.29 0.44 2.19 16 22 N -0.81 -41.57 10.93 21.84 0.24 -41.34 16 23 Si 0.99 36.18 29.59 68.60 2.03 38.21 16 24 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 25 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 26 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 27 C -0.24 -13.49 8.79 22.84 0.20 -13.29 16 28 C 0.10 5.17 11.15 84.50 0.94 6.11 16 29 N -0.59 -32.19 7.85 -193.54 -1.52 -33.71 16 30 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 33 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 34 H 0.10 1.21 7.87 -2.38 -0.02 1.19 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.43 11.32 8.65 -92.71 -0.80 10.52 16 44 H 0.13 5.34 8.06 -2.91 -0.02 5.32 16 45 H 0.29 13.47 8.29 -92.71 -0.77 12.71 16 46 H 0.12 6.48 6.20 -2.91 -0.02 6.46 16 47 H 0.14 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -80.28 387.46 2.62 -77.66 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.17 Total: 37.74 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.80 Total: -0.71 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -2.93 Total: -100.73 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -2.45 Total: -52.17 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -80.28 2.62 -77.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds