Wall clock time and date at job start Tue Mar 31 2020 18:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 N 1.46498 * 109.47309 * 240.00263 * 2 1 3 5 5 C 1.34774 * 120.00027 * 84.99611 * 4 2 1 6 6 O 1.21608 * 120.00382 * 0.02562 * 5 4 2 7 7 C 1.47382 * 119.99878 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19056 * 179.97438 * 7 5 4 9 9 C 1.34182 * 105.95396 * 179.69883 * 8 7 5 10 10 O 1.34222 * 109.12075 * 0.26384 * 9 8 7 11 11 C 1.33649 * 110.90875 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47463 * 119.99690 * 2 1 3 13 13 O 1.21287 * 119.99969 * 97.26707 * 12 2 1 14 14 N 1.34776 * 120.00188 * 277.26657 * 12 2 1 15 15 C 1.46919 * 120.63055 * 4.79688 * 14 12 2 16 16 C 1.52768 * 109.00754 * 233.58252 * 15 14 12 17 17 C 1.53041 * 109.38193 * 305.58773 * 16 15 14 18 18 C 1.52997 * 109.44820 * 181.25186 * 17 16 15 19 19 C 1.50710 * 109.46926 * 64.93935 * 18 17 16 20 20 H 1.08003 * 119.99780 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99805 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99817 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00302 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47617 * 90.00049 * 23 21 19 25 25 H 1.48501 * 109.47439 * 210.00130 * 23 21 19 26 26 H 1.48505 * 109.46988 * 329.99659 * 23 21 19 27 27 C 1.53041 * 109.53873 * 61.24020 * 17 16 15 28 28 C 1.46923 * 120.63135 * 185.07320 * 14 12 2 29 29 H 1.09003 * 109.47267 * 176.08090 * 1 2 3 30 30 H 1.09004 * 109.47414 * 296.07462 * 1 2 3 31 31 H 1.08998 * 109.47350 * 56.07581 * 1 2 3 32 32 H 0.97002 * 119.99847 * 265.00066 * 4 2 1 33 33 H 1.07999 * 127.02606 * 359.96479 * 8 7 5 34 34 H 1.08001 * 125.44046 * 180.26148 * 9 8 7 35 35 H 1.08000 * 125.80107 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.58855 * 353.41595 * 15 14 12 37 37 H 1.08997 * 109.58905 * 113.84415 * 15 14 12 38 38 H 1.08999 * 109.56345 * 185.55410 * 16 15 14 39 39 H 1.08997 * 109.35782 * 65.49752 * 16 15 14 40 40 H 1.08998 * 109.45763 * 301.21919 * 17 16 15 41 41 H 1.08995 * 109.47024 * 184.93441 * 18 17 16 42 42 H 1.08996 * 109.47451 * 304.94554 * 18 17 16 43 43 H 0.97008 * 119.99820 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.49610 * 178.68575 * 27 17 16 45 45 H 1.08996 * 109.49715 * 58.58306 * 27 17 16 46 46 H 1.09002 * 109.58938 * 246.15939 * 28 14 12 47 47 H 1.09007 * 109.58421 * 6.43996 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1619 -2.4117 7 6 2.6378 -0.7130 -3.5606 8 6 2.8371 -0.1387 -4.8992 9 6 3.3001 -1.1389 -5.6645 10 8 3.3925 -2.2536 -4.9226 11 6 2.9997 -2.0241 -3.6659 12 6 2.0323 -0.7103 1.2305 13 8 2.3598 -1.8764 1.1663 14 7 2.1178 -0.0499 2.4022 15 6 1.6276 1.3300 2.5212 16 6 2.7436 2.2076 3.0854 17 6 3.2496 1.6045 4.3978 18 6 4.3458 2.4989 4.9802 19 6 3.7579 3.8353 5.3541 20 1 2.7075 4.0275 5.1922 21 6 4.5610 4.8123 5.9030 22 7 4.0479 5.9783 6.2298 23 14 6.3778 4.4801 6.1824 24 1 7.1453 4.8771 4.9747 25 1 6.8510 5.2662 7.3501 26 1 6.5817 3.0327 6.4449 27 6 3.8174 0.2081 4.1341 28 6 2.7085 -0.6940 3.5832 29 1 -0.3634 -1.0253 -0.0702 30 1 -0.3634 0.4517 0.9231 31 1 -0.3634 0.5735 -0.8527 32 1 2.2490 -1.6317 -1.1526 33 1 2.6531 0.8811 -5.2033 34 1 3.5572 -1.0598 -6.7105 35 1 2.9766 -2.7518 -2.8683 36 1 1.3352 1.7000 1.5385 37 1 0.7703 1.3565 3.1938 38 1 2.3606 3.2112 3.2700 39 1 3.5626 2.2564 2.3678 40 1 2.4245 1.5331 5.1065 41 1 4.7671 2.0263 5.8674 42 1 5.1305 2.6423 4.2374 43 1 4.6129 6.6657 6.6163 44 1 4.1988 -0.2114 5.0650 45 1 4.6263 0.2757 3.4066 46 1 1.9412 -0.8360 4.3442 47 1 3.1269 -1.6603 3.3015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568397426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:18 Heat of formation + Delta-G solvation = -65.146114 kcal Electronic energy + Delta-G solvation = -28741.444135 eV Core-core repulsion = 24697.591364 eV Total energy + Delta-G solvation = -4043.852771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.89503 -40.72041 -39.35238 -37.60369 -35.22388 -34.22666 -33.31442 -32.30924 -31.51452 -30.67071 -29.65662 -28.60962 -25.60435 -24.58215 -23.38639 -22.89620 -21.84099 -21.36468 -20.43398 -19.94903 -19.28025 -18.53080 -17.22983 -16.77407 -16.63859 -16.49811 -16.13651 -15.62176 -15.37939 -14.88874 -14.79264 -14.39922 -14.02549 -13.83965 -13.74649 -13.53970 -13.26892 -13.23325 -13.04882 -12.79514 -12.58778 -12.45960 -12.32078 -12.18294 -11.87555 -11.50118 -11.20814 -10.96136 -10.70202 -10.40498 -10.32415 -10.18097 -9.99240 -9.92381 -9.67768 -9.54620 -9.42295 -9.18062 -9.10036 -8.57028 -8.56109 -6.06902 -4.04584 0.98365 1.72398 2.32775 2.53270 2.66854 3.06845 3.16111 3.28839 3.36829 3.39684 4.18410 4.25253 4.30878 4.43014 4.68027 4.83622 4.83968 5.02303 5.12976 5.20127 5.25052 5.29930 5.30894 5.35577 5.38206 5.49537 5.54280 5.56572 5.62634 5.82226 5.88237 5.90795 5.91236 6.05378 6.18125 6.22120 6.35555 6.49398 6.55972 6.72706 6.79887 6.90611 7.21056 7.22249 7.32168 7.39195 7.76735 7.92503 7.98434 8.50206 8.97252 9.56197 11.06222 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.002441 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.199502 B =11469.476460 C =12050.209667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.116 0.884 4 N -0.711 5.711 5 C 0.590 3.410 6 O -0.532 6.532 7 C -0.234 4.234 8 C -0.163 4.163 9 C -0.042 4.042 10 O -0.174 6.174 11 C 0.024 3.976 12 C 0.514 3.486 13 O -0.550 6.550 14 N -0.597 5.597 15 C 0.097 3.903 16 C -0.122 4.122 17 C -0.072 4.072 18 C -0.009 4.009 19 C -0.517 4.517 20 H 0.074 0.926 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.878 3.122 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.266 1.266 27 C -0.133 4.133 28 C 0.113 3.887 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.210 0.790 35 H 0.212 0.788 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -17.430 -19.340 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.134 0.866 4 N -0.365 5.365 5 C 0.378 3.622 6 O -0.409 6.409 7 C -0.239 4.239 8 C -0.183 4.183 9 C -0.107 4.107 10 O -0.069 6.069 11 C -0.046 4.046 12 C 0.301 3.699 13 O -0.429 6.429 14 N -0.329 5.329 15 C -0.025 4.025 16 C -0.160 4.160 17 C -0.091 4.091 18 C -0.047 4.047 19 C -0.555 4.555 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.191 1.191 27 C -0.171 4.171 28 C -0.009 4.009 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.243 0.757 33 H 0.179 0.821 34 H 0.226 0.774 35 H 0.229 0.771 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.138 -17.275 -19.418 26.493 hybrid contribution 1.099 -0.100 0.397 1.173 sum -4.039 -17.375 -19.021 26.077 Atomic orbital electron populations 1.22128 0.92409 1.03338 1.03868 1.20839 0.96085 0.98215 0.83192 0.86617 1.45614 1.67834 1.14570 1.08499 1.17239 0.77115 0.86096 0.81757 1.90811 1.50020 1.15223 1.84818 1.21475 1.12103 0.94564 0.95755 1.22807 1.03527 1.01031 0.90928 1.23983 1.05535 0.83391 0.97834 1.83806 1.66242 1.36857 1.19989 1.24528 0.97884 0.96757 0.85472 1.20441 0.77991 0.86887 0.84555 1.90644 1.50848 1.16286 1.85141 1.48127 1.59515 1.15175 1.10083 1.22035 0.98167 0.80299 1.02047 1.21862 0.97144 0.99737 0.97299 1.21013 0.99461 0.92620 0.95991 1.19617 0.94122 0.95479 0.95441 1.21121 0.97468 0.95990 1.40885 0.90809 1.25025 0.98408 0.94998 0.95069 1.69912 1.36051 1.04791 1.43469 0.86815 0.86055 0.78699 0.77906 1.20392 1.21476 1.19095 1.22073 0.97369 0.96736 1.00897 1.21697 0.96192 0.96855 0.86145 0.91609 0.90573 0.90576 0.75672 0.82147 0.77378 0.77111 0.89949 0.90725 0.88832 0.92250 0.91577 0.96575 0.97128 0.92772 0.90930 0.92064 0.91388 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.21 37.15 0.34 -1.20 16 2 C 0.12 1.44 2.11 -69.09 -0.15 1.30 16 3 H 0.12 1.46 6.05 -51.93 -0.31 1.14 16 4 N -0.71 -7.76 5.04 -56.03 -0.28 -8.04 16 5 C 0.59 7.28 7.78 -12.54 -0.10 7.19 16 6 O -0.53 -8.36 16.64 5.27 0.09 -8.27 16 7 C -0.23 -2.37 6.31 -103.28 -0.65 -3.03 16 8 C -0.16 -1.47 11.01 -37.45 -0.41 -1.88 16 9 C -0.04 -0.28 12.03 29.30 0.35 0.08 16 10 O -0.17 -1.34 10.52 7.64 0.08 -1.26 16 11 C 0.02 0.18 11.61 30.07 0.35 0.53 16 12 C 0.51 6.78 6.92 -10.99 -0.08 6.71 16 13 O -0.55 -8.28 15.40 5.55 0.09 -8.20 16 14 N -0.60 -7.85 2.98 -173.03 -0.52 -8.37 16 15 C 0.10 1.23 5.65 -3.93 -0.02 1.20 16 16 C -0.12 -2.00 5.17 -26.83 -0.14 -2.14 16 17 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 18 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 19 C -0.52 -13.91 8.94 -34.44 -0.31 -14.21 16 20 H 0.07 2.10 7.30 -52.48 -0.38 1.72 16 21 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 22 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 23 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 27 C -0.13 -1.99 5.36 -26.61 -0.14 -2.13 16 28 C 0.11 1.50 6.42 -3.71 -0.02 1.48 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.67 7.15 -51.93 -0.37 0.29 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.41 3.81 6.73 -40.82 -0.27 3.54 16 33 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.21 0.89 7.47 -52.49 -0.39 0.49 16 36 H 0.08 0.92 5.06 -51.93 -0.26 0.65 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 1.16 7.04 -51.93 -0.37 0.80 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -34.22 380.43 -6.95 -41.17 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.88 Total: 3.05 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.36 Total: -6.12 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.02 Total: -42.87 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.25 Total: -17.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.22 -6.95 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568397426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.972 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds