Wall clock time and date at job start Tue Mar 31 2020 18:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47205 * 2 1 4 4 N 1.46498 * 109.47309 * 240.00263 * 2 1 3 5 5 C 1.34774 * 120.00027 * 84.99611 * 4 2 1 6 6 O 1.21608 * 120.00382 * 0.02562 * 5 4 2 7 7 C 1.47382 * 119.99878 * 180.02562 * 5 4 2 8 8 C 1.47020 * 127.19056 * 179.97438 * 7 5 4 9 9 C 1.34182 * 105.95396 * 179.69883 * 8 7 5 10 10 O 1.34222 * 109.12075 * 0.26384 * 9 8 7 11 11 C 1.33649 * 110.90875 * 359.97438 * 10 9 8 12 12 C 1.50699 * 109.47463 * 119.99690 * 2 1 3 13 13 O 1.21287 * 119.99969 * 97.26707 * 12 2 1 14 14 N 1.34776 * 120.00188 * 277.26657 * 12 2 1 15 15 C 1.46919 * 120.63055 * 4.79688 * 14 12 2 16 16 C 1.52768 * 109.00754 * 233.58252 * 15 14 12 17 17 C 1.53041 * 109.38193 * 305.58773 * 16 15 14 18 18 C 1.52997 * 109.44820 * 181.25186 * 17 16 15 19 19 C 1.50710 * 109.46926 * 64.93935 * 18 17 16 20 20 H 1.08003 * 119.99780 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99805 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99817 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00302 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47617 * 90.00049 * 23 21 19 25 25 H 1.48501 * 109.47439 * 210.00130 * 23 21 19 26 26 H 1.48505 * 109.46988 * 329.99659 * 23 21 19 27 27 C 1.53041 * 109.53873 * 61.24020 * 17 16 15 28 28 C 1.46923 * 120.63135 * 185.07320 * 14 12 2 29 29 H 1.09003 * 109.47267 * 176.08090 * 1 2 3 30 30 H 1.09004 * 109.47414 * 296.07462 * 1 2 3 31 31 H 1.08998 * 109.47350 * 56.07581 * 1 2 3 32 32 H 0.97002 * 119.99847 * 265.00066 * 4 2 1 33 33 H 1.07999 * 127.02606 * 359.96479 * 8 7 5 34 34 H 1.08001 * 125.44046 * 180.26148 * 9 8 7 35 35 H 1.08000 * 125.80107 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.58855 * 353.41595 * 15 14 12 37 37 H 1.08997 * 109.58905 * 113.84415 * 15 14 12 38 38 H 1.08999 * 109.56345 * 185.55410 * 16 15 14 39 39 H 1.08997 * 109.35782 * 65.49752 * 16 15 14 40 40 H 1.08998 * 109.45763 * 301.21919 * 17 16 15 41 41 H 1.08995 * 109.47024 * 184.93441 * 18 17 16 42 42 H 1.08996 * 109.47451 * 304.94554 * 18 17 16 43 43 H 0.97008 * 119.99820 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.49610 * 178.68575 * 27 17 16 45 45 H 1.08996 * 109.49715 * 58.58306 * 27 17 16 46 46 H 1.09002 * 109.58938 * 246.15939 * 28 14 12 47 47 H 1.09007 * 109.58421 * 6.43996 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1619 -2.4117 7 6 2.6378 -0.7130 -3.5606 8 6 2.8371 -0.1387 -4.8992 9 6 3.3001 -1.1389 -5.6645 10 8 3.3925 -2.2536 -4.9226 11 6 2.9997 -2.0241 -3.6659 12 6 2.0323 -0.7103 1.2305 13 8 2.3598 -1.8764 1.1663 14 7 2.1178 -0.0499 2.4022 15 6 1.6276 1.3300 2.5212 16 6 2.7436 2.2076 3.0854 17 6 3.2496 1.6045 4.3978 18 6 4.3458 2.4989 4.9802 19 6 3.7579 3.8353 5.3541 20 1 2.7075 4.0275 5.1922 21 6 4.5610 4.8123 5.9030 22 7 4.0479 5.9783 6.2298 23 14 6.3778 4.4801 6.1824 24 1 7.1453 4.8771 4.9747 25 1 6.8510 5.2662 7.3501 26 1 6.5817 3.0327 6.4449 27 6 3.8174 0.2081 4.1341 28 6 2.7085 -0.6940 3.5832 29 1 -0.3634 -1.0253 -0.0702 30 1 -0.3634 0.4517 0.9231 31 1 -0.3634 0.5735 -0.8527 32 1 2.2490 -1.6317 -1.1526 33 1 2.6531 0.8811 -5.2033 34 1 3.5572 -1.0598 -6.7105 35 1 2.9766 -2.7518 -2.8683 36 1 1.3352 1.7000 1.5385 37 1 0.7703 1.3565 3.1938 38 1 2.3606 3.2112 3.2700 39 1 3.5626 2.2564 2.3678 40 1 2.4245 1.5331 5.1065 41 1 4.7671 2.0263 5.8674 42 1 5.1305 2.6423 4.2374 43 1 4.6129 6.6657 6.6163 44 1 4.1988 -0.2114 5.0650 45 1 4.6263 0.2757 3.4066 46 1 1.9412 -0.8360 4.3442 47 1 3.1269 -1.6603 3.3015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568397426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:17 Heat of formation + Delta-G solvation = -88.183768 kcal Electronic energy + Delta-G solvation = -28742.443122 eV Core-core repulsion = 24697.591364 eV Total energy + Delta-G solvation = -4044.851758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.49802 -41.75650 -40.36495 -38.84082 -36.20219 -35.75466 -34.23234 -33.92473 -32.56719 -31.64866 -30.48932 -30.13435 -26.81391 -25.70958 -24.48146 -24.09465 -22.79035 -22.41013 -21.37333 -21.15121 -20.29375 -19.44372 -18.84433 -18.14952 -17.60013 -17.14542 -17.06180 -16.61895 -16.39604 -16.18806 -15.78676 -15.66745 -15.28525 -15.10594 -14.97319 -14.61745 -14.56703 -14.21160 -14.15898 -13.85870 -13.66483 -13.55131 -13.37611 -13.27331 -13.08070 -12.90042 -12.72700 -12.42601 -12.16297 -11.99079 -11.73642 -11.41308 -11.31196 -11.25103 -10.95346 -10.89694 -10.81687 -10.72178 -10.35737 -9.76773 -9.70348 -8.25492 -6.26794 0.30245 1.11023 1.31298 1.35117 1.36751 1.47440 1.65755 2.03066 2.19558 2.26167 2.37218 3.10319 3.20800 3.57226 3.75412 3.81747 3.94175 3.98126 3.99143 4.06954 4.10633 4.17156 4.38545 4.48988 4.51702 4.58528 4.64117 4.70651 4.75253 4.79114 4.85480 4.92145 4.98779 5.04717 5.10290 5.16495 5.16702 5.24589 5.31631 5.33587 5.39641 5.57211 5.71725 5.73843 5.96628 6.26098 6.34434 6.36837 6.81003 6.91057 7.05099 7.37120 8.90642 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.002441 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.199502 B =11469.476460 C =12050.209667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.104 0.896 4 N -0.703 5.703 5 C 0.590 3.410 6 O -0.576 6.576 7 C -0.271 4.271 8 C -0.197 4.197 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.045 3.955 12 C 0.518 3.482 13 O -0.566 6.566 14 N -0.598 5.598 15 C 0.106 3.894 16 C -0.119 4.119 17 C -0.069 4.069 18 C -0.008 4.008 19 C -0.514 4.514 20 H 0.043 0.957 21 C 0.003 3.997 22 N -0.951 5.951 23 Si 0.941 3.059 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.247 1.247 27 C -0.124 4.124 28 C 0.117 3.883 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.415 0.585 33 H 0.155 0.845 34 H 0.248 0.752 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.008 0.992 43 H 0.263 0.737 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -20.380 -20.331 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 H 0.122 0.878 4 N -0.357 5.357 5 C 0.380 3.620 6 O -0.457 6.457 7 C -0.276 4.276 8 C -0.216 4.216 9 C -0.087 4.087 10 O -0.070 6.070 11 C -0.025 4.025 12 C 0.306 3.694 13 O -0.446 6.446 14 N -0.330 5.330 15 C -0.016 4.016 16 C -0.157 4.157 17 C -0.088 4.088 18 C -0.046 4.046 19 C -0.552 4.552 20 H 0.062 0.938 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.171 1.171 27 C -0.162 4.162 28 C -0.005 4.005 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.173 0.827 34 H 0.264 0.736 35 H 0.259 0.741 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.524 -20.274 -20.410 29.122 hybrid contribution 0.870 0.815 0.669 1.367 sum -3.655 -19.459 -19.742 27.960 Atomic orbital electron populations 1.22094 0.90834 1.03896 1.04277 1.20833 0.97273 0.97402 0.82808 0.87805 1.45555 1.67318 1.14846 1.07976 1.17575 0.76317 0.85654 0.82498 1.90778 1.52238 1.17106 1.85535 1.21486 1.14587 0.96002 0.95478 1.22966 1.05619 1.01765 0.91274 1.24642 1.03135 0.82095 0.98868 1.83852 1.65909 1.37185 1.20079 1.25031 0.95417 0.96154 0.85918 1.20598 0.77466 0.86646 0.84696 1.90636 1.51589 1.17015 1.85375 1.48149 1.59485 1.15095 1.10238 1.21953 0.96961 0.79516 1.03146 1.21740 0.98076 0.99224 0.96680 1.20926 0.97986 0.93616 0.96267 1.19592 0.95376 0.94032 0.95563 1.21473 0.96306 0.97949 1.39507 0.93830 1.25928 1.03280 0.94830 0.95310 1.70060 1.37858 1.06038 1.45339 0.85795 0.80318 0.79515 0.77819 1.19908 1.21346 1.17101 1.21958 0.97698 0.95056 1.01453 1.21677 0.96037 0.96297 0.86456 0.90801 0.89373 0.91106 0.74651 0.82685 0.73571 0.74086 0.88310 0.89091 0.91460 0.93183 0.91762 0.96424 0.97328 0.92800 0.89780 0.92752 0.89746 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.21 71.98 0.66 -2.08 16 2 C 0.13 2.75 2.11 44.24 0.09 2.85 16 3 H 0.10 2.58 6.05 -2.38 -0.01 2.56 16 4 N -0.70 -14.67 5.04 -449.43 -2.26 -16.93 16 5 C 0.59 14.57 7.78 86.65 0.67 15.24 16 6 O -0.58 -18.71 16.64 -4.06 -0.07 -18.78 16 7 C -0.27 -5.32 6.31 -18.99 -0.12 -5.44 16 8 C -0.20 -3.44 11.01 23.65 0.26 -3.18 16 9 C -0.02 -0.25 12.03 66.89 0.80 0.56 16 10 O -0.18 -2.25 10.52 4.43 0.05 -2.20 16 11 C 0.05 0.58 11.61 67.39 0.78 1.37 16 12 C 0.52 12.67 6.92 87.66 0.61 13.28 16 13 O -0.57 -15.76 15.40 -3.05 -0.05 -15.81 16 14 N -0.60 -14.51 2.98 -819.73 -2.44 -16.95 16 15 C 0.11 2.55 5.65 86.22 0.49 3.04 16 16 C -0.12 -3.87 5.17 30.53 0.16 -3.72 16 17 C -0.07 -2.41 2.10 -10.77 -0.02 -2.43 16 18 C -0.01 -0.37 3.52 29.85 0.10 -0.26 16 19 C -0.51 -28.24 8.94 25.60 0.23 -28.01 16 20 H 0.04 2.59 7.30 -2.91 -0.02 2.57 16 21 C 0.00 0.16 5.47 84.65 0.46 0.63 16 22 N -0.95 -59.00 13.96 21.44 0.30 -58.70 16 23 Si 0.94 44.19 27.47 68.60 1.88 46.07 16 24 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 27 C -0.12 -3.45 5.36 30.67 0.16 -3.29 16 28 C 0.12 2.80 6.42 86.36 0.55 3.36 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.36 7.15 -2.38 -0.02 1.34 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.42 7.08 6.73 -92.71 -0.62 6.45 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.25 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.24 1.28 7.47 -2.91 -0.02 1.26 16 36 H 0.10 2.08 5.06 -2.39 -0.01 2.07 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.54 6.91 -2.39 -0.02 2.52 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 42 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 43 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.09 2.16 7.04 -2.38 -0.02 2.14 16 Total: -1.00 -75.92 380.43 3.63 -72.30 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.31 Total: 19.07 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.90 Total: -8.08 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.41 Total: -92.58 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.07 Total: -36.79 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -75.92 3.63 -72.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568397426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.886 kcal (2) G-P(sol) polarization free energy of solvation -75.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds